RNA–Protein interactions for RNA: ENST00000556063.1

TDP1-214, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 1,076 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-214ENST00000556063 NISCHQ9Y2I1 1504 aa18.02■□□□□ 0.47
TDP1-214ENST00000556063 AEBP2Q6ZN18 517 aaPredicted RBP15.97■□□□□ 0.15
TDP1-214ENST00000556063 CCDC180Q9P1Z9 1646 aa15.94■□□□□ 0.14
TDP1-214ENST00000556063 ABCC9O60706 1549 aa15.4■□□□□ 0.06
TDP1-214ENST00000556063 ZCCHC6Q5VYS8 1495 aaKnown RBP15.04■□□□□ -0
TDP1-214ENST00000556063 DCAF8L2P0C7V8 631 aa15.04■□□□□ -0
TDP1-214ENST00000556063 NACADO15069 1562 aa14.97□□□□□ -0.01
TDP1-214ENST00000556063 MYO15BQ96JP2 1530 aa14.94□□□□□ -0.02
TDP1-214ENST00000556063 RB1CC1Q8TDY2 1594 aa14.94□□□□□ -0.02
TDP1-214ENST00000556063 DCAF1Q9Y4B6 1507 aa14.93□□□□□ -0.02
TDP1-214ENST00000556063 CHIC1Q5VXU3 224 aa14.85□□□□□ -0.03
TDP1-214ENST00000556063 SCRIBQ14160 1630 aa14.54□□□□□ -0.08
TDP1-214ENST00000556063 UNC13AQ9UPW8 1703 aa14.52□□□□□ -0.08
TDP1-214ENST00000556063 PABPN1Q86U42 306 aaKnown RBP eCLIP14.43□□□□□ -0.1
TDP1-214ENST00000556063 BICRAQ9NZM4 1560 aa14.39□□□□□ -0.11
TDP1-214ENST00000556063 SHROOM4Q9ULL8 1493 aa14.36□□□□□ -0.11
TDP1-214ENST00000556063 EIF4G1Q04637 1599 aaKnown RBP14.04□□□□□ -0.16
TDP1-214ENST00000556063 CECR2Q9BXF3 1484 aa13.99□□□□□ -0.17
TDP1-214ENST00000556063 BAZ1AQ9NRL2 1556 aaPredicted RBP13.98□□□□□ -0.17
TDP1-214ENST00000556063 SMARCA4P51532 1647 aa13.93□□□□□ -0.18
TDP1-214ENST00000556063 CC2D2AQ9P2K1 1620 aa13.93□□□□□ -0.18
TDP1-214ENST00000556063 DNAJC5BQ9UF47 199 aa13.9□□□□□ -0.18
TDP1-214ENST00000556063 MROH2BQ7Z745 1585 aa13.87□□□□□ -0.19
TDP1-214ENST00000556063 SMARCA2P51531 1590 aa13.84□□□□□ -0.19
TDP1-214ENST00000556063 ATAD2BQ9ULI0 1458 aa13.81□□□□□ -0.2
TDP1-214ENST00000556063 RSF1Q96T23 1441 aaPredicted RBP13.8□□□□□ -0.2
TDP1-214ENST00000556063 NCAPD3P42695 1498 aa13.8□□□□□ -0.2
TDP1-214ENST00000556063 PEG3Q9GZU2 1588 aa13.79□□□□□ -0.2
TDP1-214ENST00000556063 HMGXB3Q12766 1538 aa13.74□□□□□ -0.21
TDP1-214ENST00000556063 BAZ1BQ9UIG0 1483 aaKnown RBP13.74□□□□□ -0.21
TDP1-214ENST00000556063 WIZO95785 1651 aa13.72□□□□□ -0.21
TDP1-214ENST00000556063 SENP3Q9H4L4 574 aaPredicted RBP13.66□□□□□ -0.22
TDP1-214ENST00000556063 SUPT5HO00267 1087 aaKnown RBP13.65□□□□□ -0.22
TDP1-214ENST00000556063 TOP2AP11388 1531 aaKnown RBP13.62□□□□□ -0.23
TDP1-214ENST00000556063 POTEDQ86YR6 584 aa13.54□□□□□ -0.24
TDP1-214ENST00000556063 CCDC88BA6NC98 1476 aa13.45□□□□□ -0.26
TDP1-214ENST00000556063 PHF23Q9BUL5 403 aaPredicted RBP13.41□□□□□ -0.26
TDP1-214ENST00000556063 CADPSQ9ULU8 1353 aa13.41□□□□□ -0.26
TDP1-214ENST00000556063 LAMC3Q9Y6N6 1575 aa13.4□□□□□ -0.26
TDP1-214ENST00000556063 CFTRP13569 1480 aa13.36□□□□□ -0.27
TDP1-214ENST00000556063 NESP48681 1621 aa13.35□□□□□ -0.27
TDP1-214ENST00000556063 PDS5BQ9NTI5 1447 aa13.33□□□□□ -0.28
TDP1-214ENST00000556063 ERCC6Q03468 1493 aa13.3□□□□□ -0.28
TDP1-214ENST00000556063 PRDM2Q13029 1718 aa13.27□□□□□ -0.29
TDP1-214ENST00000556063 FANCD2Q9BXW9 1451 aa13.25□□□□□ -0.29
TDP1-214ENST00000556063 CEP164Q9UPV0 1460 aa13.23□□□□□ -0.29
TDP1-214ENST00000556063 KIF21AQ7Z4S6 1674 aa13.21□□□□□ -0.3
TDP1-214ENST00000556063 MRC2Q9UBG0 1479 aa13.16□□□□□ -0.3
TDP1-214ENST00000556063 ABCC8Q09428 1581 aa13.12□□□□□ -0.31
TDP1-214ENST00000556063 THOC2Q8NI27 1593 aaKnown RBP13.11□□□□□ -0.31
TDP1-214ENST00000556063 WDR62O43379 1518 aa13.08□□□□□ -0.31
TDP1-214ENST00000556063 CUX2O14529 1486 aa13.07□□□□□ -0.32
TDP1-214ENST00000556063 URB2Q14146 1524 aaKnown RBP13.07□□□□□ -0.32
TDP1-214ENST00000556063 DNMBPQ6XZF7 1577 aa13.06□□□□□ -0.32
TDP1-214ENST00000556063 TOPBP1Q92547 1522 aa13.05□□□□□ -0.32
TDP1-214ENST00000556063 WRNQ14191 1432 aaPredicted RBP eCLIP13.04□□□□□ -0.32
TDP1-214ENST00000556063 CUX1P39880 1505 aa13□□□□□ -0.33
TDP1-214ENST00000556063 TOP2BQ02880 1626 aa12.96□□□□□ -0.33
TDP1-214ENST00000556063 FGD5Q6ZNL6 1462 aa12.95□□□□□ -0.34
TDP1-214ENST00000556063 BIVM-ERCC5R4GMW8 1640 aa12.95□□□□□ -0.34
TDP1-214ENST00000556063 POLA1P09884 1462 aaPredicted RBP12.94□□□□□ -0.34
TDP1-214ENST00000556063 IFT140Q96RY7 1462 aa12.94□□□□□ -0.34
TDP1-214ENST00000556063 SYNJ1O43426 1573 aa12.94□□□□□ -0.34
TDP1-214ENST00000556063 SOGA1O94964 1423 aa12.93□□□□□ -0.34
TDP1-214ENST00000556063 TRIM41Q8WV44 630 aa12.91□□□□□ -0.34
TDP1-214ENST00000556063 RAD54L2Q9Y4B4 1467 aa12.87□□□□□ -0.35
TDP1-214ENST00000556063 TARBP1Q13395 1621 aaKnown RBP12.87□□□□□ -0.35
TDP1-214ENST00000556063 ABCA10Q8WWZ4 1543 aa12.84□□□□□ -0.35
TDP1-214ENST00000556063 FOXD1Q16676 465 aa12.83□□□□□ -0.36
TDP1-214ENST00000556063 WDR97A6NE52 1622 aa12.83□□□□□ -0.36
TDP1-214ENST00000556063 TDRD9Q8NDG6 1382 aaKnown RBP12.81□□□□□ -0.36
TDP1-214ENST00000556063 ZNF608Q9ULD9 1512 aaPredicted RBP12.81□□□□□ -0.36
TDP1-214ENST00000556063 AQRO60306 1485 aaKnown RBP eCLIP12.78□□□□□ -0.36
TDP1-214ENST00000556063 EIF4G3O43432 1585 aaKnown RBP12.78□□□□□ -0.36
TDP1-214ENST00000556063 KIF27Q86VH2 1401 aa12.78□□□□□ -0.36
TDP1-214ENST00000556063 GAPVD1Q14C86 1478 aa12.78□□□□□ -0.36
TDP1-214ENST00000556063 GRIN2BQ13224 1484 aa12.76□□□□□ -0.37
TDP1-214ENST00000556063 ABCA5Q8WWZ7 1642 aa12.74□□□□□ -0.37
TDP1-214ENST00000556063 MAGI1Q96QZ7 1491 aaPredicted RBP12.71□□□□□ -0.38
TDP1-214ENST00000556063 PBRM1Q86U86 1689 aa12.7□□□□□ -0.38
TDP1-214ENST00000556063 ERICH3Q5RHP9 1530 aa12.7□□□□□ -0.38
TDP1-214ENST00000556063 EEA1Q15075 1411 aa12.69□□□□□ -0.38
TDP1-214ENST00000556063 SNAPC4Q5SXM2 1469 aa12.68□□□□□ -0.38
TDP1-214ENST00000556063 FBLN2P98095 1184 aa12.66□□□□□ -0.38
TDP1-214ENST00000556063 CHMP7Q8WUX9 453 aaPredicted RBP12.66□□□□□ -0.38
TDP1-214ENST00000556063 IGF1RP08069 1367 aa12.66□□□□□ -0.38
TDP1-214ENST00000556063 FHAD1B1AJZ9 1412 aa12.65□□□□□ -0.38
TDP1-214ENST00000556063 SYNJ2O15056 1496 aa12.64□□□□□ -0.39
TDP1-214ENST00000556063 RUSC2Q8N2Y8 1516 aa12.63□□□□□ -0.39
TDP1-214ENST00000556063 CSRNP3Q8WYN3 585 aa12.63□□□□□ -0.39
TDP1-214ENST00000556063 CUL7Q14999 1698 aa12.63□□□□□ -0.39
TDP1-214ENST00000556063 ADAMTS12P58397 1594 aa12.61□□□□□ -0.39
TDP1-214ENST00000556063 CARMIL1Q5VZK9 1371 aa12.61□□□□□ -0.39
TDP1-214ENST00000556063 OSCARQ8IYS5 282 aa12.61□□□□□ -0.39
TDP1-214ENST00000556063 FAM9AQ8IZU1 332 aaPredicted RBP12.6□□□□□ -0.39
TDP1-214ENST00000556063 CHD1O14646 1710 aa12.59□□□□□ -0.39
TDP1-214ENST00000556063 GRIN2AQ12879 1464 aa12.58□□□□□ -0.4
TDP1-214ENST00000556063 RAPGEF2Q9Y4G8 1499 aa12.56□□□□□ -0.4
TDP1-214ENST00000556063 PRXQ9BXM0 1461 aa12.53□□□□□ -0.4
TDP1-214ENST00000556063 NUP160Q12769 1436 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms