RNA–Protein interactions for RNA: ENST00000555386.5

PSEN1-213, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,484 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-213ENST00000555386 NISCHQ9Y2I1 1504 aa23.37■■□□□ 1.33
PSEN1-213ENST00000555386 CCDC180Q9P1Z9 1646 aa20.67■□□□□ 0.9
PSEN1-213ENST00000555386 ABCC9O60706 1549 aa20.21■□□□□ 0.83
PSEN1-213ENST00000555386 CHIC1Q5VXU3 224 aa19.97■□□□□ 0.79
PSEN1-213ENST00000555386 DCAF8L2P0C7V8 631 aa19.68■□□□□ 0.74
PSEN1-213ENST00000555386 AEBP2Q6ZN18 517 aaPredicted RBP19.66■□□□□ 0.74
PSEN1-213ENST00000555386 ZCCHC6Q5VYS8 1495 aaKnown RBP19.48■□□□□ 0.71
PSEN1-213ENST00000555386 RB1CC1Q8TDY2 1594 aa19.42■□□□□ 0.7
PSEN1-213ENST00000555386 NACADO15069 1562 aa19.4■□□□□ 0.7
PSEN1-213ENST00000555386 DCAF1Q9Y4B6 1507 aa19.24■□□□□ 0.67
PSEN1-213ENST00000555386 MYO15BQ96JP2 1530 aa19.23■□□□□ 0.67
PSEN1-213ENST00000555386 UNC13AQ9UPW8 1703 aa19.06■□□□□ 0.64
PSEN1-213ENST00000555386 SCRIBQ14160 1630 aa19.02■□□□□ 0.63
PSEN1-213ENST00000555386 PABPN1Q86U42 306 aaKnown RBP eCLIP18.97■□□□□ 0.63
PSEN1-213ENST00000555386 BICRAQ9NZM4 1560 aa18.82■□□□□ 0.6
PSEN1-213ENST00000555386 SHROOM4Q9ULL8 1493 aa18.77■□□□□ 0.6
PSEN1-213ENST00000555386 DNAJC5BQ9UF47 199 aa18.39■□□□□ 0.54
PSEN1-213ENST00000555386 EIF4G1Q04637 1599 aaKnown RBP18.33■□□□□ 0.52
PSEN1-213ENST00000555386 CECR2Q9BXF3 1484 aa18.25■□□□□ 0.51
PSEN1-213ENST00000555386 CC2D2AQ9P2K1 1620 aa18.24■□□□□ 0.51
PSEN1-213ENST00000555386 SMARCA4P51532 1647 aa18.12■□□□□ 0.49
PSEN1-213ENST00000555386 BAZ1AQ9NRL2 1556 aaPredicted RBP18.1■□□□□ 0.49
PSEN1-213ENST00000555386 MROH2BQ7Z745 1585 aa18.06■□□□□ 0.48
PSEN1-213ENST00000555386 ATAD2BQ9ULI0 1458 aa17.96■□□□□ 0.47
PSEN1-213ENST00000555386 SMARCA2P51531 1590 aa17.94■□□□□ 0.46
PSEN1-213ENST00000555386 WIZO95785 1651 aa17.92■□□□□ 0.46
PSEN1-213ENST00000555386 RSF1Q96T23 1441 aaPredicted RBP17.89■□□□□ 0.45
PSEN1-213ENST00000555386 NCAPD3P42695 1498 aa17.87■□□□□ 0.45
PSEN1-213ENST00000555386 BAZ1BQ9UIG0 1483 aaKnown RBP17.86■□□□□ 0.45
PSEN1-213ENST00000555386 PEG3Q9GZU2 1588 aa17.85■□□□□ 0.45
PSEN1-213ENST00000555386 HMGXB3Q12766 1538 aa17.81■□□□□ 0.44
PSEN1-213ENST00000555386 SUPT5HO00267 1087 aaKnown RBP17.74■□□□□ 0.43
PSEN1-213ENST00000555386 TOP2AP11388 1531 aaKnown RBP17.66■□□□□ 0.42
PSEN1-213ENST00000555386 PHF23Q9BUL5 403 aaPredicted RBP17.58■□□□□ 0.41
PSEN1-213ENST00000555386 NESP48681 1621 aa17.53■□□□□ 0.4
PSEN1-213ENST00000555386 CCDC88BA6NC98 1476 aa17.48■□□□□ 0.39
PSEN1-213ENST00000555386 LAMC3Q9Y6N6 1575 aa17.41■□□□□ 0.38
PSEN1-213ENST00000555386 ERCC6Q03468 1493 aa17.41■□□□□ 0.38
PSEN1-213ENST00000555386 CADPSQ9ULU8 1353 aa17.41■□□□□ 0.38
PSEN1-213ENST00000555386 KIF21AQ7Z4S6 1674 aa17.33■□□□□ 0.36
PSEN1-213ENST00000555386 CFTRP13569 1480 aa17.32■□□□□ 0.36
PSEN1-213ENST00000555386 PDS5BQ9NTI5 1447 aa17.31■□□□□ 0.36
PSEN1-213ENST00000555386 PRDM2Q13029 1718 aa17.26■□□□□ 0.35
PSEN1-213ENST00000555386 FANCD2Q9BXW9 1451 aa17.25■□□□□ 0.35
PSEN1-213ENST00000555386 CEP164Q9UPV0 1460 aa17.21■□□□□ 0.35
PSEN1-213ENST00000555386 THOC2Q8NI27 1593 aaKnown RBP17.16■□□□□ 0.34
PSEN1-213ENST00000555386 MRC2Q9UBG0 1479 aa17.13■□□□□ 0.33
PSEN1-213ENST00000555386 URB2Q14146 1524 aaKnown RBP17.07■□□□□ 0.32
PSEN1-213ENST00000555386 CUX2O14529 1486 aa17.04■□□□□ 0.32
PSEN1-213ENST00000555386 WDR62O43379 1518 aa17.04■□□□□ 0.32
PSEN1-213ENST00000555386 TOPBP1Q92547 1522 aa16.98■□□□□ 0.31
PSEN1-213ENST00000555386 ABCC8Q09428 1581 aa16.96■□□□□ 0.31
PSEN1-213ENST00000555386 DNMBPQ6XZF7 1577 aa16.96■□□□□ 0.31
PSEN1-213ENST00000555386 CUX1P39880 1505 aa16.93■□□□□ 0.3
PSEN1-213ENST00000555386 WRNQ14191 1432 aaPredicted RBP eCLIP16.88■□□□□ 0.29
PSEN1-213ENST00000555386 SYNJ1O43426 1573 aa16.85■□□□□ 0.29
PSEN1-213ENST00000555386 POLA1P09884 1462 aaPredicted RBP16.85■□□□□ 0.29
PSEN1-213ENST00000555386 FGD5Q6ZNL6 1462 aa16.85■□□□□ 0.29
PSEN1-213ENST00000555386 RAD54L2Q9Y4B4 1467 aa16.83■□□□□ 0.29
PSEN1-213ENST00000555386 SOGA1O94964 1423 aa16.81■□□□□ 0.28
PSEN1-213ENST00000555386 IFT140Q96RY7 1462 aa16.8■□□□□ 0.28
PSEN1-213ENST00000555386 TOP2BQ02880 1626 aa16.8■□□□□ 0.28
PSEN1-213ENST00000555386 BIVM-ERCC5R4GMW8 1640 aa16.79■□□□□ 0.28
PSEN1-213ENST00000555386 ZNF608Q9ULD9 1512 aaPredicted RBP16.79■□□□□ 0.28
PSEN1-213ENST00000555386 TARBP1Q13395 1621 aaKnown RBP16.77■□□□□ 0.27
PSEN1-213ENST00000555386 TDRD9Q8NDG6 1382 aaKnown RBP16.73■□□□□ 0.27
PSEN1-213ENST00000555386 AQRO60306 1485 aaKnown RBP eCLIP16.72■□□□□ 0.27
PSEN1-213ENST00000555386 EIF4G3O43432 1585 aaKnown RBP16.71■□□□□ 0.27
PSEN1-213ENST00000555386 TRIM41Q8WV44 630 aa16.67■□□□□ 0.26
PSEN1-213ENST00000555386 WDR97A6NE52 1622 aa16.67■□□□□ 0.26
PSEN1-213ENST00000555386 SENP3Q9H4L4 574 aaPredicted RBP16.65■□□□□ 0.26
PSEN1-213ENST00000555386 ABCA10Q8WWZ4 1543 aa16.64■□□□□ 0.25
PSEN1-213ENST00000555386 GAPVD1Q14C86 1478 aa16.6■□□□□ 0.25
PSEN1-213ENST00000555386 PBRM1Q86U86 1689 aa16.59■□□□□ 0.25
PSEN1-213ENST00000555386 FBLN2P98095 1184 aa16.59■□□□□ 0.25
PSEN1-213ENST00000555386 ABCA5Q8WWZ7 1642 aa16.58■□□□□ 0.25
PSEN1-213ENST00000555386 GRIN2BQ13224 1484 aa16.56■□□□□ 0.24
PSEN1-213ENST00000555386 SNAPC4Q5SXM2 1469 aa16.56■□□□□ 0.24
PSEN1-213ENST00000555386 PLPPR3Q6T4P5 718 aa16.55■□□□□ 0.24
PSEN1-213ENST00000555386 CHD1O14646 1710 aa16.52■□□□□ 0.23
PSEN1-213ENST00000555386 KIF27Q86VH2 1401 aa16.5■□□□□ 0.23
PSEN1-213ENST00000555386 CHMP7Q8WUX9 453 aaPredicted RBP16.49■□□□□ 0.23
PSEN1-213ENST00000555386 RUSC2Q8N2Y8 1516 aa16.48■□□□□ 0.23
PSEN1-213ENST00000555386 MAGI1Q96QZ7 1491 aaPredicted RBP16.48■□□□□ 0.23
PSEN1-213ENST00000555386 ERICH3Q5RHP9 1530 aa16.44■□□□□ 0.22
PSEN1-213ENST00000555386 OSCARQ8IYS5 282 aa16.44■□□□□ 0.22
PSEN1-213ENST00000555386 FAM9AQ8IZU1 332 aaPredicted RBP16.43■□□□□ 0.22
PSEN1-213ENST00000555386 SYNJ2O15056 1496 aa16.42■□□□□ 0.22
PSEN1-213ENST00000555386 ADAMTS12P58397 1594 aa16.42■□□□□ 0.22
PSEN1-213ENST00000555386 IGF1RP08069 1367 aa16.41■□□□□ 0.22
PSEN1-213ENST00000555386 FHAD1B1AJZ9 1412 aa16.39■□□□□ 0.21
PSEN1-213ENST00000555386 DNAJC5Q9H3Z4 198 aa16.38■□□□□ 0.21
PSEN1-213ENST00000555386 CUL7Q14999 1698 aa16.35■□□□□ 0.21
PSEN1-213ENST00000555386 GRIN2AQ12879 1464 aa16.35■□□□□ 0.21
PSEN1-213ENST00000555386 CARMIL1Q5VZK9 1371 aa16.34■□□□□ 0.21
PSEN1-213ENST00000555386 EHMT2Q96KQ7 1210 aa16.3■□□□□ 0.2
PSEN1-213ENST00000555386 CEP170Q5SW79 1584 aa16.29■□□□□ 0.2
PSEN1-213ENST00000555386 CSRNP3Q8WYN3 585 aa16.29■□□□□ 0.2
PSEN1-213ENST00000555386 RAPGEF2Q9Y4G8 1499 aa16.24■□□□□ 0.19
PSEN1-213ENST00000555386 EEA1Q15075 1411 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms