RNA–Protein interactions for RNA: ENST00000553960.1

PABPN1-203, Transcript of poly(A) binding protein nuclear 1, humanhuman

TSL 2

Gene PABPN1, Length 817 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPN1-203ENST00000553960 NISCHQ9Y2I1 1504 aa25.3■■□□□ 1.64
PABPN1-203ENST00000553960 CCDC180Q9P1Z9 1646 aa22.27■■□□□ 1.16
PABPN1-203ENST00000553960 ZCCHC6Q5VYS8 1495 aaKnown RBP21.25■□□□□ 0.99
PABPN1-203ENST00000553960 DCAF1Q9Y4B6 1507 aa21.17■□□□□ 0.98
PABPN1-203ENST00000553960 MYO15BQ96JP2 1530 aa21.05■□□□□ 0.96
PABPN1-203ENST00000553960 ABCC9O60706 1549 aa20.77■□□□□ 0.92
PABPN1-203ENST00000553960 NACADO15069 1562 aa20.75■□□□□ 0.91
PABPN1-203ENST00000553960 RB1CC1Q8TDY2 1594 aa20.51■□□□□ 0.87
PABPN1-203ENST00000553960 DCAF8L2P0C7V8 631 aa20.4■□□□□ 0.86
PABPN1-203ENST00000553960 SCRIBQ14160 1630 aa20.07■□□□□ 0.8
PABPN1-203ENST00000553960 SHROOM4Q9ULL8 1493 aa20■□□□□ 0.79
PABPN1-203ENST00000553960 UNC13AQ9UPW8 1703 aa20■□□□□ 0.79
PABPN1-203ENST00000553960 BICRAQ9NZM4 1560 aa19.87■□□□□ 0.77
PABPN1-203ENST00000553960 BAZ1AQ9NRL2 1556 aaPredicted RBP19.57■□□□□ 0.72
PABPN1-203ENST00000553960 RSF1Q96T23 1441 aaPredicted RBP19.51■□□□□ 0.71
PABPN1-203ENST00000553960 CECR2Q9BXF3 1484 aa19.49■□□□□ 0.71
PABPN1-203ENST00000553960 PABPN1Q86U42 306 aaKnown RBP eCLIP19.45■□□□□ 0.7
PABPN1-203ENST00000553960 SMARCA4P51532 1647 aa19.44■□□□□ 0.7
PABPN1-203ENST00000553960 PEG3Q9GZU2 1588 aa19.42■□□□□ 0.7
PABPN1-203ENST00000553960 MROH2BQ7Z745 1585 aa19.41■□□□□ 0.7
PABPN1-203ENST00000553960 EIF4G1Q04637 1599 aaKnown RBP19.24■□□□□ 0.67
PABPN1-203ENST00000553960 SUPT5HO00267 1087 aaKnown RBP19.23■□□□□ 0.67
PABPN1-203ENST00000553960 SMARCA2P51531 1590 aa19.23■□□□□ 0.67
PABPN1-203ENST00000553960 WIZO95785 1651 aa19.19■□□□□ 0.66
PABPN1-203ENST00000553960 ATAD2BQ9ULI0 1458 aa19.17■□□□□ 0.66
PABPN1-203ENST00000553960 NCAPD3P42695 1498 aa19.16■□□□□ 0.66
PABPN1-203ENST00000553960 TOP2AP11388 1531 aaKnown RBP19.15■□□□□ 0.66
PABPN1-203ENST00000553960 HMGXB3Q12766 1538 aa19.12■□□□□ 0.65
PABPN1-203ENST00000553960 BAZ1BQ9UIG0 1483 aaKnown RBP18.98■□□□□ 0.63
PABPN1-203ENST00000553960 CC2D2AQ9P2K1 1620 aa18.94■□□□□ 0.62
PABPN1-203ENST00000553960 CCDC88BA6NC98 1476 aa18.87■□□□□ 0.61
PABPN1-203ENST00000553960 CFTRP13569 1480 aa18.64■□□□□ 0.57
PABPN1-203ENST00000553960 CHIC1Q5VXU3 224 aa18.58■□□□□ 0.56
PABPN1-203ENST00000553960 CADPSQ9ULU8 1353 aa18.55■□□□□ 0.56
PABPN1-203ENST00000553960 PRDM2Q13029 1718 aa18.54■□□□□ 0.56
PABPN1-203ENST00000553960 LAMC3Q9Y6N6 1575 aa18.48■□□□□ 0.55
PABPN1-203ENST00000553960 DNAJC5BQ9UF47 199 aa18.44■□□□□ 0.54
PABPN1-203ENST00000553960 WRNQ14191 1432 aaPredicted RBP eCLIP18.34■□□□□ 0.53
PABPN1-203ENST00000553960 BIVM-ERCC5R4GMW8 1640 aa18.3■□□□□ 0.52
PABPN1-203ENST00000553960 TOP2BQ02880 1626 aa18.29■□□□□ 0.52
PABPN1-203ENST00000553960 PDS5BQ9NTI5 1447 aa18.29■□□□□ 0.52
PABPN1-203ENST00000553960 TRIM41Q8WV44 630 aa18.27■□□□□ 0.52
PABPN1-203ENST00000553960 FANCD2Q9BXW9 1451 aa18.26■□□□□ 0.51
PABPN1-203ENST00000553960 ABCC8Q09428 1581 aa18.25■□□□□ 0.51
PABPN1-203ENST00000553960 SYNJ1O43426 1573 aa18.21■□□□□ 0.51
PABPN1-203ENST00000553960 NESP48681 1621 aa18.2■□□□□ 0.5
PABPN1-203ENST00000553960 CUX1P39880 1505 aa18.18■□□□□ 0.5
PABPN1-203ENST00000553960 EEA1Q15075 1411 aa18.18■□□□□ 0.5
PABPN1-203ENST00000553960 CEP164Q9UPV0 1460 aa18.17■□□□□ 0.5
PABPN1-203ENST00000553960 DNMBPQ6XZF7 1577 aa18.14■□□□□ 0.49
PABPN1-203ENST00000553960 TOPBP1Q92547 1522 aa18.08■□□□□ 0.48
PABPN1-203ENST00000553960 KIF21AQ7Z4S6 1674 aa18.06■□□□□ 0.48
PABPN1-203ENST00000553960 URB2Q14146 1524 aaKnown RBP18.03■□□□□ 0.48
PABPN1-203ENST00000553960 MRC2Q9UBG0 1479 aa18.02■□□□□ 0.48
PABPN1-203ENST00000553960 WDR62O43379 1518 aa18■□□□□ 0.47
PABPN1-203ENST00000553960 FGD5Q6ZNL6 1462 aa17.98■□□□□ 0.47
PABPN1-203ENST00000553960 ABCA10Q8WWZ4 1543 aa17.97■□□□□ 0.47
PABPN1-203ENST00000553960 POLA1P09884 1462 aaPredicted RBP17.96■□□□□ 0.47
PABPN1-203ENST00000553960 WDR97A6NE52 1622 aa17.94■□□□□ 0.46
PABPN1-203ENST00000553960 SOGA1O94964 1423 aa17.93■□□□□ 0.46
PABPN1-203ENST00000553960 THOC2Q8NI27 1593 aaKnown RBP17.92■□□□□ 0.46
PABPN1-203ENST00000553960 KIF27Q86VH2 1401 aa17.92■□□□□ 0.46
PABPN1-203ENST00000553960 CSRNP3Q8WYN3 585 aa17.88■□□□□ 0.45
PABPN1-203ENST00000553960 TARBP1Q13395 1621 aaKnown RBP17.87■□□□□ 0.45
PABPN1-203ENST00000553960 KIF21BO75037 1637 aa17.87■□□□□ 0.45
PABPN1-203ENST00000553960 ERCC6Q03468 1493 aa17.85■□□□□ 0.45
PABPN1-203ENST00000553960 RUSC2Q8N2Y8 1516 aa17.83■□□□□ 0.45
PABPN1-203ENST00000553960 CUX2O14529 1486 aa17.83■□□□□ 0.45
PABPN1-203ENST00000553960 PRXQ9BXM0 1461 aa17.83■□□□□ 0.45
PABPN1-203ENST00000553960 ERICH3Q5RHP9 1530 aa17.82■□□□□ 0.44
PABPN1-203ENST00000553960 IFT140Q96RY7 1462 aa17.82■□□□□ 0.44
PABPN1-203ENST00000553960 ABCA5Q8WWZ7 1642 aa17.8■□□□□ 0.44
PABPN1-203ENST00000553960 IGF1RP08069 1367 aa17.79■□□□□ 0.44
PABPN1-203ENST00000553960 RAD54L2Q9Y4B4 1467 aa17.76■□□□□ 0.43
PABPN1-203ENST00000553960 GOLGA3Q08378 1498 aa17.75■□□□□ 0.43
PABPN1-203ENST00000553960 CUL7Q14999 1698 aa17.72■□□□□ 0.43
PABPN1-203ENST00000553960 TNIKQ9UKE5 1360 aa17.72■□□□□ 0.43
PABPN1-203ENST00000553960 GAPVD1Q14C86 1478 aa17.7■□□□□ 0.42
PABPN1-203ENST00000553960 FAM9AQ8IZU1 332 aaPredicted RBP17.65■□□□□ 0.42
PABPN1-203ENST00000553960 CARMIL1Q5VZK9 1371 aa17.65■□□□□ 0.42
PABPN1-203ENST00000553960 RAPGEF2Q9Y4G8 1499 aa17.64■□□□□ 0.41
PABPN1-203ENST00000553960 LOC105371045A0A1W2PR82 267 aa17.64■□□□□ 0.41
PABPN1-203ENST00000553960 GRIN2BQ13224 1484 aa17.63■□□□□ 0.41
PABPN1-203ENST00000553960 TDRD9Q8NDG6 1382 aaKnown RBP17.6■□□□□ 0.41
PABPN1-203ENST00000553960 PBRM1Q86U86 1689 aa17.58■□□□□ 0.41
PABPN1-203ENST00000553960 FHAD1B1AJZ9 1412 aa17.57■□□□□ 0.4
PABPN1-203ENST00000553960 MAGI1Q96QZ7 1491 aaPredicted RBP17.56■□□□□ 0.4
PABPN1-203ENST00000553960 EIF4G3O43432 1585 aaKnown RBP17.56■□□□□ 0.4
PABPN1-203ENST00000553960 ZNF608Q9ULD9 1512 aaPredicted RBP17.54■□□□□ 0.4
PABPN1-203ENST00000553960 ADAMTS12P58397 1594 aa17.53■□□□□ 0.4
PABPN1-203ENST00000553960 AQRO60306 1485 aaKnown RBP eCLIP17.53■□□□□ 0.46e-32■■■□□ 15.5
PABPN1-203ENST00000553960 CEP162Q5TB80 1403 aa17.48■□□□□ 0.39
PABPN1-203ENST00000553960 UBTFP17480 764 aaKnown RBP17.45■□□□□ 0.38
PABPN1-203ENST00000553960 SYNJ2O15056 1496 aa17.44■□□□□ 0.38
PABPN1-203ENST00000553960 CTTNBP2Q8WZ74 1663 aa17.42■□□□□ 0.38
PABPN1-203ENST00000553960 CLIP1P30622 1438 aa17.4■□□□□ 0.38
PABPN1-203ENST00000553960 SNAPC4Q5SXM2 1469 aa17.4■□□□□ 0.38
PABPN1-203ENST00000553960 GRIN2AQ12879 1464 aa17.39■□□□□ 0.37
PABPN1-203ENST00000553960 EFCAB5A4FU69 1503 aa17.38■□□□□ 0.37
PABPN1-203ENST00000553960 NUP160Q12769 1436 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms