RNA–Protein interactions for RNA: ENST00000553898.1

PCNX4-207, Transcript of pecanex 4, humanhuman

TSL 3

Gene PCNX4, Length 523 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX4-207ENST00000553898 NISCHQ9Y2I1 1504 aa23.42■■□□□ 1.34
PCNX4-207ENST00000553898 CCDC180Q9P1Z9 1646 aa20.84■□□□□ 0.93
PCNX4-207ENST00000553898 ABCC9O60706 1549 aa20.4■□□□□ 0.86
PCNX4-207ENST00000553898 DCAF8L2P0C7V8 631 aa19.72■□□□□ 0.75
PCNX4-207ENST00000553898 RB1CC1Q8TDY2 1594 aa19.6■□□□□ 0.73
PCNX4-207ENST00000553898 NACADO15069 1562 aa19.54■□□□□ 0.72
PCNX4-207ENST00000553898 ZCCHC6Q5VYS8 1495 aaKnown RBP19.52■□□□□ 0.72
PCNX4-207ENST00000553898 MYO15BQ96JP2 1530 aa19.39■□□□□ 0.69
PCNX4-207ENST00000553898 DCAF1Q9Y4B6 1507 aa19.35■□□□□ 0.69
PCNX4-207ENST00000553898 UNC13AQ9UPW8 1703 aa19.28■□□□□ 0.68
PCNX4-207ENST00000553898 BICRAQ9NZM4 1560 aa19.06■□□□□ 0.64
PCNX4-207ENST00000553898 SCRIBQ14160 1630 aa19.04■□□□□ 0.64
PCNX4-207ENST00000553898 PABPN1Q86U42 306 aaKnown RBP eCLIP18.97■□□□□ 0.63
PCNX4-207ENST00000553898 SHROOM4Q9ULL8 1493 aa18.8■□□□□ 0.6
PCNX4-207ENST00000553898 DNAJC5BQ9UF47 199 aa18.77■□□□□ 0.6
PCNX4-207ENST00000553898 EIF4G1Q04637 1599 aaKnown RBP18.54■□□□□ 0.56
PCNX4-207ENST00000553898 CC2D2AQ9P2K1 1620 aa18.49■□□□□ 0.55
PCNX4-207ENST00000553898 CECR2Q9BXF3 1484 aa18.33■□□□□ 0.52
PCNX4-207ENST00000553898 BAZ1AQ9NRL2 1556 aaPredicted RBP18.2■□□□□ 0.5
PCNX4-207ENST00000553898 SMARCA4P51532 1647 aa18.17■□□□□ 0.5
PCNX4-207ENST00000553898 SMARCA2P51531 1590 aa18.07■□□□□ 0.48
PCNX4-207ENST00000553898 AEBP2Q6ZN18 517 aaPredicted RBP18.06■□□□□ 0.48
PCNX4-207ENST00000553898 MROH2BQ7Z745 1585 aa18.04■□□□□ 0.48
PCNX4-207ENST00000553898 ATAD2BQ9ULI0 1458 aa18.01■□□□□ 0.47
PCNX4-207ENST00000553898 NCAPD3P42695 1498 aa18■□□□□ 0.47
PCNX4-207ENST00000553898 HMGXB3Q12766 1538 aa17.97■□□□□ 0.47
PCNX4-207ENST00000553898 PEG3Q9GZU2 1588 aa17.96■□□□□ 0.47
PCNX4-207ENST00000553898 BAZ1BQ9UIG0 1483 aaKnown RBP17.95■□□□□ 0.46
PCNX4-207ENST00000553898 WIZO95785 1651 aa17.89■□□□□ 0.45
PCNX4-207ENST00000553898 RSF1Q96T23 1441 aaPredicted RBP17.87■□□□□ 0.45
PCNX4-207ENST00000553898 CHIC1Q5VXU3 224 aa17.77■□□□□ 0.44
PCNX4-207ENST00000553898 TOP2AP11388 1531 aaKnown RBP17.71■□□□□ 0.43
PCNX4-207ENST00000553898 SUPT5HO00267 1087 aaKnown RBP17.66■□□□□ 0.42
PCNX4-207ENST00000553898 NESP48681 1621 aa17.65■□□□□ 0.42
PCNX4-207ENST00000553898 LAMC3Q9Y6N6 1575 aa17.58■□□□□ 0.41
PCNX4-207ENST00000553898 ERCC6Q03468 1493 aa17.56■□□□□ 0.4
PCNX4-207ENST00000553898 KIF21AQ7Z4S6 1674 aa17.52■□□□□ 0.39
PCNX4-207ENST00000553898 CADPSQ9ULU8 1353 aa17.49■□□□□ 0.39
PCNX4-207ENST00000553898 CCDC88BA6NC98 1476 aa17.48■□□□□ 0.39
PCNX4-207ENST00000553898 THOC2Q8NI27 1593 aaKnown RBP17.47■□□□□ 0.39
PCNX4-207ENST00000553898 PDS5BQ9NTI5 1447 aa17.47■□□□□ 0.39
PCNX4-207ENST00000553898 CUX2O14529 1486 aa17.44■□□□□ 0.38
PCNX4-207ENST00000553898 CFTRP13569 1480 aa17.38■□□□□ 0.37
PCNX4-207ENST00000553898 PRDM2Q13029 1718 aa17.35■□□□□ 0.37
PCNX4-207ENST00000553898 FANCD2Q9BXW9 1451 aa17.32■□□□□ 0.36
PCNX4-207ENST00000553898 CEP164Q9UPV0 1460 aa17.32■□□□□ 0.36
PCNX4-207ENST00000553898 MRC2Q9UBG0 1479 aa17.29■□□□□ 0.36
PCNX4-207ENST00000553898 WDR62O43379 1518 aa17.27■□□□□ 0.36
PCNX4-207ENST00000553898 URB2Q14146 1524 aaKnown RBP17.16■□□□□ 0.34
PCNX4-207ENST00000553898 ABCC8Q09428 1581 aa17.09■□□□□ 0.33
PCNX4-207ENST00000553898 DNMBPQ6XZF7 1577 aa17.05■□□□□ 0.32
PCNX4-207ENST00000553898 TOPBP1Q92547 1522 aa17.04■□□□□ 0.32
PCNX4-207ENST00000553898 DNAJC5Q9H3Z4 198 aa16.94■□□□□ 0.3
PCNX4-207ENST00000553898 IFT140Q96RY7 1462 aa16.93■□□□□ 0.3
PCNX4-207ENST00000553898 CUX1P39880 1505 aa16.92■□□□□ 0.3
PCNX4-207ENST00000553898 WRNQ14191 1432 aaPredicted RBP eCLIP16.92■□□□□ 0.3
PCNX4-207ENST00000553898 TARBP1Q13395 1621 aaKnown RBP16.89■□□□□ 0.29
PCNX4-207ENST00000553898 POLA1P09884 1462 aaPredicted RBP16.89■□□□□ 0.29
PCNX4-207ENST00000553898 FGD5Q6ZNL6 1462 aa16.89■□□□□ 0.29
PCNX4-207ENST00000553898 ZNF608Q9ULD9 1512 aaPredicted RBP16.88■□□□□ 0.29
PCNX4-207ENST00000553898 SOGA1O94964 1423 aa16.87■□□□□ 0.29
PCNX4-207ENST00000553898 EIF4G3O43432 1585 aaKnown RBP16.86■□□□□ 0.29
PCNX4-207ENST00000553898 TOP2BQ02880 1626 aa16.84■□□□□ 0.29
PCNX4-207ENST00000553898 BIVM-ERCC5R4GMW8 1640 aa16.83■□□□□ 0.28
PCNX4-207ENST00000553898 SYNJ1O43426 1573 aa16.82■□□□□ 0.28
PCNX4-207ENST00000553898 RAD54L2Q9Y4B4 1467 aa16.82■□□□□ 0.28
PCNX4-207ENST00000553898 WDR97A6NE52 1622 aa16.78■□□□□ 0.28
PCNX4-207ENST00000553898 TDRD9Q8NDG6 1382 aaKnown RBP16.75■□□□□ 0.27
PCNX4-207ENST00000553898 AQRO60306 1485 aaKnown RBP eCLIP16.74■□□□□ 0.27
PCNX4-207ENST00000553898 ABCA10Q8WWZ4 1543 aa16.7■□□□□ 0.26
PCNX4-207ENST00000553898 CHD1O14646 1710 aa16.69■□□□□ 0.26
PCNX4-207ENST00000553898 TRIM41Q8WV44 630 aa16.68■□□□□ 0.26
PCNX4-207ENST00000553898 GAPVD1Q14C86 1478 aa16.67■□□□□ 0.26
PCNX4-207ENST00000553898 FBLN2P98095 1184 aa16.66■□□□□ 0.26
PCNX4-207ENST00000553898 GRIN2BQ13224 1484 aa16.66■□□□□ 0.26
PCNX4-207ENST00000553898 PBRM1Q86U86 1689 aa16.65■□□□□ 0.26
PCNX4-207ENST00000553898 ABCA5Q8WWZ7 1642 aa16.65■□□□□ 0.26
PCNX4-207ENST00000553898 SNAPC4Q5SXM2 1469 aa16.61■□□□□ 0.25
PCNX4-207ENST00000553898 MAGI1Q96QZ7 1491 aaPredicted RBP16.6■□□□□ 0.25
PCNX4-207ENST00000553898 OSCARQ8IYS5 282 aa16.59■□□□□ 0.25
PCNX4-207ENST00000553898 CHMP7Q8WUX9 453 aaPredicted RBP16.59■□□□□ 0.25
PCNX4-207ENST00000553898 KIF27Q86VH2 1401 aa16.58■□□□□ 0.24
PCNX4-207ENST00000553898 ERICH3Q5RHP9 1530 aa16.54■□□□□ 0.24
PCNX4-207ENST00000553898 SYNJ2O15056 1496 aa16.53■□□□□ 0.24
PCNX4-207ENST00000553898 RIMBP3CA6NJZ7 1639 aa16.5■□□□□ 0.23
PCNX4-207ENST00000553898 RIMBP3BA6NNM3 1639 aa16.5■□□□□ 0.23
PCNX4-207ENST00000553898 RIMBP3Q9UFD9 1639 aa16.5■□□□□ 0.23
PCNX4-207ENST00000553898 ADAMTS12P58397 1594 aa16.49■□□□□ 0.23
PCNX4-207ENST00000553898 FHAD1B1AJZ9 1412 aa16.48■□□□□ 0.23
PCNX4-207ENST00000553898 CLASP1Q7Z460 1538 aa16.47■□□□□ 0.23
PCNX4-207ENST00000553898 ARHGEF11O15085 1522 aa16.45■□□□□ 0.22
PCNX4-207ENST00000553898 CUL7Q14999 1698 aa16.45■□□□□ 0.22
PCNX4-207ENST00000553898 GRIN2AQ12879 1464 aa16.42■□□□□ 0.22
PCNX4-207ENST00000553898 IGF1RP08069 1367 aa16.4■□□□□ 0.22
PCNX4-207ENST00000553898 CARMIL1Q5VZK9 1371 aa16.38■□□□□ 0.21
PCNX4-207ENST00000553898 RUSC2Q8N2Y8 1516 aa16.36■□□□□ 0.21
PCNX4-207ENST00000553898 CEP170Q5SW79 1584 aa16.36■□□□□ 0.21
PCNX4-207ENST00000553898 FAM9AQ8IZU1 332 aaPredicted RBP16.35■□□□□ 0.21
PCNX4-207ENST00000553898 EEA1Q15075 1411 aa16.35■□□□□ 0.21
PCNX4-207ENST00000553898 NUP160Q12769 1436 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 630.9 ms