RNA–Protein interactions for RNA: ENST00000553889.5

PRKCH-209, Transcript of protein kinase C eta, humanhuman

TSL 4

Gene PRKCH, Length 553 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-209ENST00000553889 NISCHQ9Y2I1 1504 aa20.06■□□□□ 0.8
PRKCH-209ENST00000553889 CCDC180Q9P1Z9 1646 aa17.32■□□□□ 0.36
PRKCH-209ENST00000553889 ZCCHC6Q5VYS8 1495 aaKnown RBP16.95■□□□□ 0.3
PRKCH-209ENST00000553889 DCAF1Q9Y4B6 1507 aa16.73■□□□□ 0.27
PRKCH-209ENST00000553889 MYO15BQ96JP2 1530 aa16.4■□□□□ 0.22
PRKCH-209ENST00000553889 SHROOM4Q9ULL8 1493 aa16.37■□□□□ 0.21
PRKCH-209ENST00000553889 DCAF8L2P0C7V8 631 aa16.12■□□□□ 0.17
PRKCH-209ENST00000553889 NACADO15069 1562 aa16.04■□□□□ 0.16
PRKCH-209ENST00000553889 SUPT5HO00267 1087 aaKnown RBP16■□□□□ 0.15
PRKCH-209ENST00000553889 ABCC9O60706 1549 aa15.91■□□□□ 0.14
PRKCH-209ENST00000553889 SCRIBQ14160 1630 aa15.79■□□□□ 0.12
PRKCH-209ENST00000553889 RB1CC1Q8TDY2 1594 aa15.75■□□□□ 0.11
PRKCH-209ENST00000553889 RSF1Q96T23 1441 aaPredicted RBP15.71■□□□□ 0.11
PRKCH-209ENST00000553889 CHIC1Q5VXU3 224 aa15.71■□□□□ 0.11
PRKCH-209ENST00000553889 CECR2Q9BXF3 1484 aa15.46■□□□□ 0.07
PRKCH-209ENST00000553889 MROH2BQ7Z745 1585 aa15.45■□□□□ 0.06
PRKCH-209ENST00000553889 BAZ1AQ9NRL2 1556 aaPredicted RBP15.45■□□□□ 0.06
PRKCH-209ENST00000553889 UNC13AQ9UPW8 1703 aa15.37■□□□□ 0.05
PRKCH-209ENST00000553889 SMARCA4P51532 1647 aa15.29■□□□□ 0.04
PRKCH-209ENST00000553889 WIZO95785 1651 aa15.28■□□□□ 0.04
PRKCH-209ENST00000553889 BICRAQ9NZM4 1560 aa15.28■□□□□ 0.04
PRKCH-209ENST00000553889 TOP2AP11388 1531 aaKnown RBP15.24■□□□□ 0.03
PRKCH-209ENST00000553889 PEG3Q9GZU2 1588 aa15.21■□□□□ 0.03
PRKCH-209ENST00000553889 EIF4G1Q04637 1599 aaKnown RBP15.19■□□□□ 0.02
PRKCH-209ENST00000553889 TRIM41Q8WV44 630 aa15.1■□□□□ 0.01
PRKCH-209ENST00000553889 SMARCA2P51531 1590 aa15.09■□□□□ 0.01
PRKCH-209ENST00000553889 CCDC88BA6NC98 1476 aa15.06■□□□□ 0
PRKCH-209ENST00000553889 LOC105371045A0A1W2PR82 267 aa14.99□□□□□ -0.01
PRKCH-209ENST00000553889 ATAD2BQ9ULI0 1458 aa14.96□□□□□ -0.01
PRKCH-209ENST00000553889 PABPN1Q86U42 306 aaKnown RBP eCLIP14.95□□□□□ -0.02
PRKCH-209ENST00000553889 EEA1Q15075 1411 aa14.86□□□□□ -0.03
PRKCH-209ENST00000553889 BAZ1BQ9UIG0 1483 aaKnown RBP14.85□□□□□ -0.03
PRKCH-209ENST00000553889 HMGXB3Q12766 1538 aa14.83□□□□□ -0.04
PRKCH-209ENST00000553889 NCAPD3P42695 1498 aa14.82□□□□□ -0.04
PRKCH-209ENST00000553889 HRCP23327 699 aa14.78□□□□□ -0.04
PRKCH-209ENST00000553889 ABCC8Q09428 1581 aa14.77□□□□□ -0.04
PRKCH-209ENST00000553889 TRIM26Q12899 539 aaPredicted RBP14.77□□□□□ -0.05
PRKCH-209ENST00000553889 WRNQ14191 1432 aaPredicted RBP eCLIP14.74□□□□□ -0.05
PRKCH-209ENST00000553889 PCGF6Q9BYE7 350 aa14.72□□□□□ -0.05
PRKCH-209ENST00000553889 FAM9AQ8IZU1 332 aaPredicted RBP14.69□□□□□ -0.06
PRKCH-209ENST00000553889 TNIKQ9UKE5 1360 aa14.67□□□□□ -0.06
PRKCH-209ENST00000553889 SOGA1O94964 1423 aa14.64□□□□□ -0.07
PRKCH-209ENST00000553889 CSRNP3Q8WYN3 585 aa14.63□□□□□ -0.07
PRKCH-209ENST00000553889 SYNJ1O43426 1573 aa14.62□□□□□ -0.07
PRKCH-209ENST00000553889 TOP2BQ02880 1626 aa14.6□□□□□ -0.07
PRKCH-209ENST00000553889 BIVM-ERCC5R4GMW8 1640 aa14.59□□□□□ -0.07
PRKCH-209ENST00000553889 CFTRP13569 1480 aa14.58□□□□□ -0.08
PRKCH-209ENST00000553889 KIF21BO75037 1637 aa14.58□□□□□ -0.08
PRKCH-209ENST00000553889 GOLGA3Q08378 1498 aa14.57□□□□□ -0.08
PRKCH-209ENST00000553889 CEP164Q9UPV0 1460 aa14.56□□□□□ -0.08
PRKCH-209ENST00000553889 RUSC2Q8N2Y8 1516 aa14.53□□□□□ -0.08
PRKCH-209ENST00000553889 CEP162Q5TB80 1403 aa14.52□□□□□ -0.08
PRKCH-209ENST00000553889 PRDM2Q13029 1718 aa14.48□□□□□ -0.09
PRKCH-209ENST00000553889 ZEB1P37275 1124 aaPredicted RBP14.46□□□□□ -0.09
PRKCH-209ENST00000553889 ERICH3Q5RHP9 1530 aa14.44□□□□□ -0.1
PRKCH-209ENST00000553889 CUX1P39880 1505 aa14.42□□□□□ -0.1
PRKCH-209ENST00000553889 CADPSQ9ULU8 1353 aa14.42□□□□□ -0.1
PRKCH-209ENST00000553889 PRXQ9BXM0 1461 aa14.41□□□□□ -0.1
PRKCH-209ENST00000553889 CC2D2AQ9P2K1 1620 aa14.37□□□□□ -0.11
PRKCH-209ENST00000553889 UBTFP17480 764 aaKnown RBP14.35□□□□□ -0.11
PRKCH-209ENST00000553889 KIF27Q86VH2 1401 aa14.34□□□□□ -0.11
PRKCH-209ENST00000553889 RAPGEF2Q9Y4G8 1499 aa14.34□□□□□ -0.11
PRKCH-209ENST00000553889 CLIP1P30622 1438 aa14.32□□□□□ -0.12
PRKCH-209ENST00000553889 EHMT2Q96KQ7 1210 aa14.32□□□□□ -0.12
PRKCH-209ENST00000553889 VPS8Q8N3P4 1428 aa14.31□□□□□ -0.12
PRKCH-209ENST00000553889 FANCD2Q9BXW9 1451 aa14.21□□□□□ -0.13
PRKCH-209ENST00000553889 DNMBPQ6XZF7 1577 aa14.2□□□□□ -0.14
PRKCH-209ENST00000553889 LAMC3Q9Y6N6 1575 aa14.2□□□□□ -0.14
PRKCH-209ENST00000553889 IGF1RP08069 1367 aa14.2□□□□□ -0.14
PRKCH-209ENST00000553889 PPARGC1BQ86YN6 1023 aaKnown RBP14.18□□□□□ -0.14
PRKCH-209ENST00000553889 FGD5Q6ZNL6 1462 aa14.18□□□□□ -0.14
PRKCH-209ENST00000553889 CUX2O14529 1486 aa14.15□□□□□ -0.14
PRKCH-209ENST00000553889 ABCA10Q8WWZ4 1543 aa14.15□□□□□ -0.14
PRKCH-209ENST00000553889 ARAP1Q96P48 1450 aa14.14□□□□□ -0.15
PRKCH-209ENST00000553889 TOPBP1Q92547 1522 aa14.12□□□□□ -0.15
PRKCH-209ENST00000553889 CARMIL1Q5VZK9 1371 aa14.1□□□□□ -0.15
PRKCH-209ENST00000553889 MAP3K1Q13233 1512 aa14.1□□□□□ -0.15
PRKCH-209ENST00000553889 POLA1P09884 1462 aaPredicted RBP14.08□□□□□ -0.16
PRKCH-209ENST00000553889 ARHGAP35Q9NRY4 1499 aa14.07□□□□□ -0.16
PRKCH-209ENST00000553889 APLP2Q06481 763 aa14.06□□□□□ -0.16
PRKCH-209ENST00000553889 PDS5BQ9NTI5 1447 aa14.06□□□□□ -0.16
PRKCH-209ENST00000553889 CUL7Q14999 1698 aa14.04□□□□□ -0.16
PRKCH-209ENST00000553889 WDR97A6NE52 1622 aa14.03□□□□□ -0.16
PRKCH-209ENST00000553889 NESP48681 1621 aa14.03□□□□□ -0.16
PRKCH-209ENST00000553889 URB2Q14146 1524 aaKnown RBP14.01□□□□□ -0.17
PRKCH-209ENST00000553889 CCER1Q8TC90 406 aaPredicted RBP14□□□□□ -0.17
PRKCH-209ENST00000553889 RRBP1Q9P2E9 1410 aaKnown RBP13.98□□□□□ -0.17
PRKCH-209ENST00000553889 EFCAB5A4FU69 1503 aa13.97□□□□□ -0.17
PRKCH-209ENST00000553889 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.97□□□□□ -0.17
PRKCH-209ENST00000553889 RAD54L2Q9Y4B4 1467 aa13.97□□□□□ -0.17
PRKCH-209ENST00000553889 ABCA5Q8WWZ7 1642 aa13.96□□□□□ -0.17
PRKCH-209ENST00000553889 FHAD1B1AJZ9 1412 aa13.96□□□□□ -0.18
PRKCH-209ENST00000553889 CLSPNQ9HAW4 1339 aa13.95□□□□□ -0.18
PRKCH-209ENST00000553889 AQRO60306 1485 aaKnown RBP eCLIP13.95□□□□□ -0.18
PRKCH-209ENST00000553889 TIAM1Q13009 1591 aa13.91□□□□□ -0.18
PRKCH-209ENST00000553889 TARBP1Q13395 1621 aaKnown RBP13.9□□□□□ -0.19
PRKCH-209ENST00000553889 CTTNBP2Q8WZ74 1663 aa13.88□□□□□ -0.19
PRKCH-209ENST00000553889 GAPVD1Q14C86 1478 aa13.88□□□□□ -0.19
PRKCH-209ENST00000553889 KANK4Q5T7N3 995 aaPredicted RBP13.88□□□□□ -0.19
PRKCH-209ENST00000553889 KIF21AQ7Z4S6 1674 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms