RNA–Protein interactions for RNA: ENST00000553447.6

PSEN1-206, Transcript of presenilin 1, humanhuman

TSL 4

Gene PSEN1, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-206ENST00000553447 NISCHQ9Y2I1 1504 aa40.57■■■■■ 4.09
PSEN1-206ENST00000553447 CCDC180Q9P1Z9 1646 aa35.62■■■■□ 3.29
PSEN1-206ENST00000553447 ZCCHC6Q5VYS8 1495 aaKnown RBP34.05■■■■□ 3.04
PSEN1-206ENST00000553447 ABCC9O60706 1549 aa33.75■■■□□ 2.99
PSEN1-206ENST00000553447 DCAF1Q9Y4B6 1507 aa33.59■■■□□ 2.97
PSEN1-206ENST00000553447 DCAF8L2P0C7V8 631 aa33.43■■■□□ 2.94
PSEN1-206ENST00000553447 MYO15BQ96JP2 1530 aa33.29■■■□□ 2.92
PSEN1-206ENST00000553447 NACADO15069 1562 aa33.17■■■□□ 2.9
PSEN1-206ENST00000553447 RB1CC1Q8TDY2 1594 aa32.94■■■□□ 2.86
PSEN1-206ENST00000553447 SHROOM4Q9ULL8 1493 aa32.8■■■□□ 2.84
PSEN1-206ENST00000553447 SCRIBQ14160 1630 aa32.62■■■□□ 2.81
PSEN1-206ENST00000553447 UNC13AQ9UPW8 1703 aa32.35■■■□□ 2.77
PSEN1-206ENST00000553447 BICRAQ9NZM4 1560 aa31.94■■■□□ 2.7
PSEN1-206ENST00000553447 PABPN1Q86U42 306 aaKnown RBP eCLIP31.71■■■□□ 2.67
PSEN1-206ENST00000553447 CECR2Q9BXF3 1484 aa31.5■■■□□ 2.63
PSEN1-206ENST00000553447 SUPT5HO00267 1087 aaKnown RBP31.4■■■□□ 2.62
PSEN1-206ENST00000553447 BAZ1AQ9NRL2 1556 aaPredicted RBP31.37■■■□□ 2.61
PSEN1-206ENST00000553447 RSF1Q96T23 1441 aaPredicted RBP31.33■■■□□ 2.61
PSEN1-206ENST00000553447 MROH2BQ7Z745 1585 aa31.32■■■□□ 2.6
PSEN1-206ENST00000553447 SMARCA4P51532 1647 aa31.28■■■□□ 2.6
PSEN1-206ENST00000553447 WIZO95785 1651 aa31.09■■■□□ 2.57
PSEN1-206ENST00000553447 EIF4G1Q04637 1599 aaKnown RBP31■■■□□ 2.55
PSEN1-206ENST00000553447 PEG3Q9GZU2 1588 aa30.92■■■□□ 2.54
PSEN1-206ENST00000553447 SMARCA2P51531 1590 aa30.79■■■□□ 2.52
PSEN1-206ENST00000553447 ATAD2BQ9ULI0 1458 aa30.77■■■□□ 2.52
PSEN1-206ENST00000553447 TOP2AP11388 1531 aaKnown RBP30.77■■■□□ 2.52
PSEN1-206ENST00000553447 CC2D2AQ9P2K1 1620 aa30.61■■■□□ 2.49
PSEN1-206ENST00000553447 BAZ1BQ9UIG0 1483 aaKnown RBP30.6■■■□□ 2.49
PSEN1-206ENST00000553447 NCAPD3P42695 1498 aa30.56■■■□□ 2.48
PSEN1-206ENST00000553447 HMGXB3Q12766 1538 aa30.55■■■□□ 2.48
PSEN1-206ENST00000553447 CCDC88BA6NC98 1476 aa30.39■■■□□ 2.46
PSEN1-206ENST00000553447 CHIC1Q5VXU3 224 aa29.96■■■□□ 2.39
PSEN1-206ENST00000553447 DNAJC5BQ9UF47 199 aa29.93■■■□□ 2.38
PSEN1-206ENST00000553447 PRDM2Q13029 1718 aa29.82■■■□□ 2.36
PSEN1-206ENST00000553447 CFTRP13569 1480 aa29.8■■■□□ 2.36
PSEN1-206ENST00000553447 CADPSQ9ULU8 1353 aa29.73■■■□□ 2.35
PSEN1-206ENST00000553447 ABCC8Q09428 1581 aa29.68■■■□□ 2.34
PSEN1-206ENST00000553447 LAMC3Q9Y6N6 1575 aa29.62■■■□□ 2.33
PSEN1-206ENST00000553447 TRIM41Q8WV44 630 aa29.58■■■□□ 2.33
PSEN1-206ENST00000553447 NESP48681 1621 aa29.56■■■□□ 2.32
PSEN1-206ENST00000553447 WRNQ14191 1432 aaPredicted RBP eCLIP29.51■■■□□ 2.31
PSEN1-206ENST00000553447 SYNJ1O43426 1573 aa29.44■■■□□ 2.3
PSEN1-206ENST00000553447 FANCD2Q9BXW9 1451 aa29.42■■■□□ 2.3
PSEN1-206ENST00000553447 BIVM-ERCC5R4GMW8 1640 aa29.38■■■□□ 2.29
PSEN1-206ENST00000553447 TOP2BQ02880 1626 aa29.36■■■□□ 2.29
PSEN1-206ENST00000553447 PDS5BQ9NTI5 1447 aa29.33■■■□□ 2.29
PSEN1-206ENST00000553447 CUX1P39880 1505 aa29.31■■■□□ 2.28
PSEN1-206ENST00000553447 KIF21AQ7Z4S6 1674 aa29.31■■■□□ 2.28
PSEN1-206ENST00000553447 CEP164Q9UPV0 1460 aa29.28■■■□□ 2.28
PSEN1-206ENST00000553447 DNMBPQ6XZF7 1577 aa29.17■■■□□ 2.26
PSEN1-206ENST00000553447 TOPBP1Q92547 1522 aa29.1■■■□□ 2.25
PSEN1-206ENST00000553447 URB2Q14146 1524 aaKnown RBP29.09■■■□□ 2.25
PSEN1-206ENST00000553447 FGD5Q6ZNL6 1462 aa29.03■■■□□ 2.24
PSEN1-206ENST00000553447 SOGA1O94964 1423 aa29.03■■■□□ 2.24
PSEN1-206ENST00000553447 MRC2Q9UBG0 1479 aa29■■■□□ 2.23
PSEN1-206ENST00000553447 FAM9AQ8IZU1 332 aaPredicted RBP28.99■■■□□ 2.23
PSEN1-206ENST00000553447 EEA1Q15075 1411 aa28.98■■■□□ 2.23
PSEN1-206ENST00000553447 ERCC6Q03468 1493 aa28.97■■■□□ 2.23
PSEN1-206ENST00000553447 RUSC2Q8N2Y8 1516 aa28.94■■■□□ 2.22
PSEN1-206ENST00000553447 POLA1P09884 1462 aaPredicted RBP28.91■■■□□ 2.22
PSEN1-206ENST00000553447 WDR62O43379 1518 aa28.89■■■□□ 2.21
PSEN1-206ENST00000553447 THOC2Q8NI27 1593 aaKnown RBP28.88■■■□□ 2.21
PSEN1-206ENST00000553447 WDR97A6NE52 1622 aa28.8■■■□□ 2.2
PSEN1-206ENST00000553447 RAD54L2Q9Y4B4 1467 aa28.79■■■□□ 2.2
PSEN1-206ENST00000553447 KIF27Q86VH2 1401 aa28.78■■■□□ 2.2
PSEN1-206ENST00000553447 ABCA10Q8WWZ4 1543 aa28.78■■■□□ 2.2
PSEN1-206ENST00000553447 CSRNP3Q8WYN3 585 aa28.77■■■□□ 2.2
PSEN1-206ENST00000553447 CUX2O14529 1486 aa28.77■■■□□ 2.2
PSEN1-206ENST00000553447 LOC105371045A0A1W2PR82 267 aa28.76■■■□□ 2.19
PSEN1-206ENST00000553447 TARBP1Q13395 1621 aaKnown RBP28.72■■■□□ 2.19
PSEN1-206ENST00000553447 KIF21BO75037 1637 aa28.67■■■□□ 2.18
PSEN1-206ENST00000553447 ABCA5Q8WWZ7 1642 aa28.61■■■□□ 2.17
PSEN1-206ENST00000553447 IFT140Q96RY7 1462 aa28.6■■■□□ 2.17
PSEN1-206ENST00000553447 GOLGA3Q08378 1498 aa28.56■■■□□ 2.16
PSEN1-206ENST00000553447 EHMT2Q96KQ7 1210 aa28.55■■■□□ 2.16
PSEN1-206ENST00000553447 PRXQ9BXM0 1461 aa28.54■■■□□ 2.16
PSEN1-206ENST00000553447 IGF1RP08069 1367 aa28.52■■■□□ 2.16
PSEN1-206ENST00000553447 ERICH3Q5RHP9 1530 aa28.51■■■□□ 2.15
PSEN1-206ENST00000553447 TDRD9Q8NDG6 1382 aaKnown RBP28.5■■■□□ 2.15
PSEN1-206ENST00000553447 GAPVD1Q14C86 1478 aa28.49■■■□□ 2.15
PSEN1-206ENST00000553447 PBRM1Q86U86 1689 aa28.47■■■□□ 2.15
PSEN1-206ENST00000553447 RAPGEF2Q9Y4G8 1499 aa28.46■■■□□ 2.15
PSEN1-206ENST00000553447 CUL7Q14999 1698 aa28.46■■■□□ 2.15
PSEN1-206ENST00000553447 ZNF608Q9ULD9 1512 aaPredicted RBP28.42■■■□□ 2.14
PSEN1-206ENST00000553447 TNIKQ9UKE5 1360 aa28.39■■■□□ 2.14
PSEN1-206ENST00000553447 EIF4G3O43432 1585 aaKnown RBP28.39■■■□□ 2.14
PSEN1-206ENST00000553447 AQRO60306 1485 aaKnown RBP eCLIP28.39■■■□□ 2.13
PSEN1-206ENST00000553447 CARMIL1Q5VZK9 1371 aa28.38■■■□□ 2.13
PSEN1-206ENST00000553447 UBTFP17480 764 aaKnown RBP28.35■■■□□ 2.13
PSEN1-206ENST00000553447 GRIN2BQ13224 1484 aa28.33■■■□□ 2.13
PSEN1-206ENST00000553447 ADAMTS12P58397 1594 aa28.25■■■□□ 2.11
PSEN1-206ENST00000553447 CEP162Q5TB80 1403 aa28.22■■■□□ 2.11
PSEN1-206ENST00000553447 FHAD1B1AJZ9 1412 aa28.18■■■□□ 2.1
PSEN1-206ENST00000553447 SNAPC4Q5SXM2 1469 aa28.16■■■□□ 2.1
PSEN1-206ENST00000553447 CTTNBP2Q8WZ74 1663 aa28.14■■■□□ 2.1
PSEN1-206ENST00000553447 MAGI1Q96QZ7 1491 aaPredicted RBP28.13■■■□□ 2.09
PSEN1-206ENST00000553447 CLIP1P30622 1438 aa28.06■■■□□ 2.08
PSEN1-206ENST00000553447 SYNJ2O15056 1496 aa28.02■■■□□ 2.08
PSEN1-206ENST00000553447 GRIN2AQ12879 1464 aa27.98■■■□□ 2.07
PSEN1-206ENST00000553447 RANGAP1P46060 587 aaPredicted RBP27.93■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms