RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 NISCHQ9Y2I1 1504 aa17.77■□□□□ 0.43
LIMA1-216ENST00000552909 CCDC180Q9P1Z9 1646 aa15.73■□□□□ 0.11
LIMA1-216ENST00000552909 ABCC9O60706 1549 aa15.5■□□□□ 0.07
LIMA1-216ENST00000552909 DCAF8L2P0C7V8 631 aa14.94□□□□□ -0.02
LIMA1-216ENST00000552909 RB1CC1Q8TDY2 1594 aa14.82□□□□□ -0.04
LIMA1-216ENST00000552909 NACADO15069 1562 aa14.81□□□□□ -0.04
LIMA1-216ENST00000552909 ZCCHC6Q5VYS8 1495 aaKnown RBP14.79□□□□□ -0.04
LIMA1-216ENST00000552909 MYO15BQ96JP2 1530 aa14.7□□□□□ -0.06
LIMA1-216ENST00000552909 DCAF1Q9Y4B6 1507 aa14.65□□□□□ -0.06
LIMA1-216ENST00000552909 UNC13AQ9UPW8 1703 aa14.54□□□□□ -0.08
LIMA1-216ENST00000552909 PABPN1Q86U42 306 aaKnown RBP eCLIP14.53□□□□□ -0.08
LIMA1-216ENST00000552909 BICRAQ9NZM4 1560 aa14.44□□□□□ -0.1
LIMA1-216ENST00000552909 SCRIBQ14160 1630 aa14.43□□□□□ -0.1
LIMA1-216ENST00000552909 DNAJC5BQ9UF47 199 aa14.29□□□□□ -0.12
LIMA1-216ENST00000552909 SHROOM4Q9ULL8 1493 aa14.17□□□□□ -0.14
LIMA1-216ENST00000552909 EIF4G1Q04637 1599 aaKnown RBP14.04□□□□□ -0.16
LIMA1-216ENST00000552909 CC2D2AQ9P2K1 1620 aa13.99□□□□□ -0.17
LIMA1-216ENST00000552909 CECR2Q9BXF3 1484 aa13.9□□□□□ -0.18
LIMA1-216ENST00000552909 SMARCA4P51532 1647 aa13.78□□□□□ -0.2
LIMA1-216ENST00000552909 BAZ1AQ9NRL2 1556 aaPredicted RBP13.74□□□□□ -0.21
LIMA1-216ENST00000552909 MROH2BQ7Z745 1585 aa13.73□□□□□ -0.21
LIMA1-216ENST00000552909 ATAD2BQ9ULI0 1458 aa13.72□□□□□ -0.21
LIMA1-216ENST00000552909 NCAPD3P42695 1498 aa13.69□□□□□ -0.22
LIMA1-216ENST00000552909 SMARCA2P51531 1590 aa13.66□□□□□ -0.22
LIMA1-216ENST00000552909 PEG3Q9GZU2 1588 aa13.62□□□□□ -0.23
LIMA1-216ENST00000552909 HMGXB3Q12766 1538 aa13.6□□□□□ -0.23
LIMA1-216ENST00000552909 BAZ1BQ9UIG0 1483 aaKnown RBP13.59□□□□□ -0.23
LIMA1-216ENST00000552909 WIZO95785 1651 aa13.58□□□□□ -0.24
LIMA1-216ENST00000552909 RSF1Q96T23 1441 aaPredicted RBP13.57□□□□□ -0.24
LIMA1-216ENST00000552909 NESP48681 1621 aa13.43□□□□□ -0.26
LIMA1-216ENST00000552909 TOP2AP11388 1531 aaKnown RBP13.38□□□□□ -0.27
LIMA1-216ENST00000552909 ERCC6Q03468 1493 aa13.32□□□□□ -0.28
LIMA1-216ENST00000552909 CADPSQ9ULU8 1353 aa13.31□□□□□ -0.28
LIMA1-216ENST00000552909 LAMC3Q9Y6N6 1575 aa13.31□□□□□ -0.28
LIMA1-216ENST00000552909 SUPT5HO00267 1087 aaKnown RBP13.28□□□□□ -0.28
LIMA1-216ENST00000552909 CCDC88BA6NC98 1476 aa13.27□□□□□ -0.28
LIMA1-216ENST00000552909 PDS5BQ9NTI5 1447 aa13.23□□□□□ -0.29
LIMA1-216ENST00000552909 KIF21AQ7Z4S6 1674 aa13.23□□□□□ -0.29
LIMA1-216ENST00000552909 CFTRP13569 1480 aa13.23□□□□□ -0.29
LIMA1-216ENST00000552909 THOC2Q8NI27 1593 aaKnown RBP13.16□□□□□ -0.3
LIMA1-216ENST00000552909 FANCD2Q9BXW9 1451 aa13.15□□□□□ -0.3
LIMA1-216ENST00000552909 CUX2O14529 1486 aa13.13□□□□□ -0.31
LIMA1-216ENST00000552909 CEP164Q9UPV0 1460 aa13.12□□□□□ -0.31
LIMA1-216ENST00000552909 MRC2Q9UBG0 1479 aa13.09□□□□□ -0.31
LIMA1-216ENST00000552909 PRDM2Q13029 1718 aa13.07□□□□□ -0.32
LIMA1-216ENST00000552909 WDR62O43379 1518 aa13.05□□□□□ -0.32
LIMA1-216ENST00000552909 URB2Q14146 1524 aaKnown RBP13.04□□□□□ -0.32
LIMA1-216ENST00000552909 TOPBP1Q92547 1522 aa12.94□□□□□ -0.34
LIMA1-216ENST00000552909 DNMBPQ6XZF7 1577 aa12.9□□□□□ -0.34
LIMA1-216ENST00000552909 ABCC8Q09428 1581 aa12.89□□□□□ -0.35
LIMA1-216ENST00000552909 CUX1P39880 1505 aa12.87□□□□□ -0.35
LIMA1-216ENST00000552909 ZNF608Q9ULD9 1512 aaPredicted RBP12.85□□□□□ -0.35
LIMA1-216ENST00000552909 POLA1P09884 1462 aaPredicted RBP12.85□□□□□ -0.35
LIMA1-216ENST00000552909 IFT140Q96RY7 1462 aa12.84□□□□□ -0.35
LIMA1-216ENST00000552909 RAD54L2Q9Y4B4 1467 aa12.82□□□□□ -0.36
LIMA1-216ENST00000552909 FGD5Q6ZNL6 1462 aa12.81□□□□□ -0.36
LIMA1-216ENST00000552909 DNAJC5Q9H3Z4 198 aa12.81□□□□□ -0.36
LIMA1-216ENST00000552909 TARBP1Q13395 1621 aaKnown RBP12.8□□□□□ -0.36
LIMA1-216ENST00000552909 SOGA1O94964 1423 aa12.79□□□□□ -0.36
LIMA1-216ENST00000552909 AQRO60306 1485 aaKnown RBP eCLIP12.77□□□□□ -0.36
LIMA1-216ENST00000552909 WRNQ14191 1432 aaPredicted RBP eCLIP12.77□□□□□ -0.37
LIMA1-216ENST00000552909 TDRD9Q8NDG6 1382 aaKnown RBP12.76□□□□□ -0.37
LIMA1-216ENST00000552909 SYNJ1O43426 1573 aa12.75□□□□□ -0.37
LIMA1-216ENST00000552909 EIF4G3O43432 1585 aaKnown RBP12.75□□□□□ -0.37
LIMA1-216ENST00000552909 TOP2BQ02880 1626 aa12.72□□□□□ -0.37
LIMA1-216ENST00000552909 BIVM-ERCC5R4GMW8 1640 aa12.71□□□□□ -0.38
LIMA1-216ENST00000552909 WDR97A6NE52 1622 aa12.68□□□□□ -0.38
LIMA1-216ENST00000552909 ABCA10Q8WWZ4 1543 aa12.67□□□□□ -0.38
LIMA1-216ENST00000552909 OSCARQ8IYS5 282 aa12.66□□□□□ -0.38
LIMA1-216ENST00000552909 FBLN2P98095 1184 aa12.64□□□□□ -0.39
LIMA1-216ENST00000552909 GAPVD1Q14C86 1478 aa12.64□□□□□ -0.39
LIMA1-216ENST00000552909 SNAPC4Q5SXM2 1469 aa12.62□□□□□ -0.39
LIMA1-216ENST00000552909 GRIN2BQ13224 1484 aa12.62□□□□□ -0.39
LIMA1-216ENST00000552909 ABCA5Q8WWZ7 1642 aa12.61□□□□□ -0.39
LIMA1-216ENST00000552909 HRCP23327 699 aa12.61□□□□□ -0.39
LIMA1-216ENST00000552909 CHD1O14646 1710 aa12.59□□□□□ -0.39
LIMA1-216ENST00000552909 PBRM1Q86U86 1689 aa12.58□□□□□ -0.4
LIMA1-216ENST00000552909 CHMP7Q8WUX9 453 aaPredicted RBP12.57□□□□□ -0.4
LIMA1-216ENST00000552909 MAGI1Q96QZ7 1491 aaPredicted RBP12.57□□□□□ -0.4
LIMA1-216ENST00000552909 SYNJ2O15056 1496 aa12.54□□□□□ -0.4
LIMA1-216ENST00000552909 TRIM41Q8WV44 630 aa12.5□□□□□ -0.41
LIMA1-216ENST00000552909 PELP1Q8IZL8 1130 aaKnown RBP12.5□□□□□ -0.41
LIMA1-216ENST00000552909 ERICH3Q5RHP9 1530 aa12.5□□□□□ -0.41
LIMA1-216ENST00000552909 ADAMTS12P58397 1594 aa12.49□□□□□ -0.41
LIMA1-216ENST00000552909 KIF27Q86VH2 1401 aa12.48□□□□□ -0.41
LIMA1-216ENST00000552909 IGF1RP08069 1367 aa12.48□□□□□ -0.41
LIMA1-216ENST00000552909 FHAD1B1AJZ9 1412 aa12.47□□□□□ -0.41
LIMA1-216ENST00000552909 GRIN2AQ12879 1464 aa12.47□□□□□ -0.41
LIMA1-216ENST00000552909 RUSC2Q8N2Y8 1516 aa12.46□□□□□ -0.42
LIMA1-216ENST00000552909 CLASP1Q7Z460 1538 aa12.44□□□□□ -0.42
LIMA1-216ENST00000552909 RIMBP3CA6NJZ7 1639 aa12.44□□□□□ -0.42
LIMA1-216ENST00000552909 RIMBP3BA6NNM3 1639 aa12.44□□□□□ -0.42
LIMA1-216ENST00000552909 RIMBP3Q9UFD9 1639 aa12.44□□□□□ -0.42
LIMA1-216ENST00000552909 ARHGEF11O15085 1522 aa12.43□□□□□ -0.42
LIMA1-216ENST00000552909 CEP170Q5SW79 1584 aa12.41□□□□□ -0.42
LIMA1-216ENST00000552909 NUP160Q12769 1436 aa12.4□□□□□ -0.42
LIMA1-216ENST00000552909 CHIC1Q5VXU3 224 aa12.4□□□□□ -0.42
LIMA1-216ENST00000552909 CARMIL1Q5VZK9 1371 aa12.39□□□□□ -0.43
LIMA1-216ENST00000552909 CYB5RLQ6IPT4 315 aa12.37□□□□□ -0.43
LIMA1-216ENST00000552909 CUL7Q14999 1698 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms