RNA–Protein interactions for RNA: ENST00000552199.5

RAB3IP-216, Transcript of RAB3A interacting protein, humanhuman

TSL 1 (best)

Gene RAB3IP, Length 1,905 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3IP-216ENST00000552199 NISCHQ9Y2I1 1504 aa30.62■■■□□ 2.49
RAB3IP-216ENST00000552199 CCDC180Q9P1Z9 1646 aa26.43■■□□□ 1.82
RAB3IP-216ENST00000552199 ZCCHC6Q5VYS8 1495 aaKnown RBP25.8■■□□□ 1.72
RAB3IP-216ENST00000552199 SHROOM4Q9ULL8 1493 aa25.4■■□□□ 1.66
RAB3IP-216ENST00000552199 DCAF1Q9Y4B6 1507 aa25.27■■□□□ 1.64
RAB3IP-216ENST00000552199 DCAF8L2P0C7V8 631 aa25.22■■□□□ 1.63
RAB3IP-216ENST00000552199 MYO15BQ96JP2 1530 aa24.78■■□□□ 1.56
RAB3IP-216ENST00000552199 SUPT5HO00267 1087 aaKnown RBP24.67■■□□□ 1.54
RAB3IP-216ENST00000552199 ABCC9O60706 1549 aa24.65■■□□□ 1.54
RAB3IP-216ENST00000552199 NACADO15069 1562 aa24.52■■□□□ 1.52
RAB3IP-216ENST00000552199 SCRIBQ14160 1630 aa24.45■■□□□ 1.5
RAB3IP-216ENST00000552199 RB1CC1Q8TDY2 1594 aa24.2■■□□□ 1.47
RAB3IP-216ENST00000552199 RSF1Q96T23 1441 aaPredicted RBP23.96■■□□□ 1.43
RAB3IP-216ENST00000552199 CHIC1Q5VXU3 224 aa23.86■■□□□ 1.41
RAB3IP-216ENST00000552199 CECR2Q9BXF3 1484 aa23.8■■□□□ 1.4
RAB3IP-216ENST00000552199 UNC13AQ9UPW8 1703 aa23.79■■□□□ 1.4
RAB3IP-216ENST00000552199 MROH2BQ7Z745 1585 aa23.7■■□□□ 1.39
RAB3IP-216ENST00000552199 BAZ1AQ9NRL2 1556 aaPredicted RBP23.58■■□□□ 1.37
RAB3IP-216ENST00000552199 WIZO95785 1651 aa23.55■■□□□ 1.36
RAB3IP-216ENST00000552199 BICRAQ9NZM4 1560 aa23.51■■□□□ 1.35
RAB3IP-216ENST00000552199 SMARCA4P51532 1647 aa23.44■■□□□ 1.34
RAB3IP-216ENST00000552199 PABPN1Q86U42 306 aaKnown RBP eCLIP23.39■■□□□ 1.33
RAB3IP-216ENST00000552199 TOP2AP11388 1531 aaKnown RBP23.26■■□□□ 1.31
RAB3IP-216ENST00000552199 TRIM41Q8WV44 630 aa23.13■■□□□ 1.29
RAB3IP-216ENST00000552199 PEG3Q9GZU2 1588 aa23.1■■□□□ 1.29
RAB3IP-216ENST00000552199 SMARCA2P51531 1590 aa23.08■■□□□ 1.29
RAB3IP-216ENST00000552199 CCDC88BA6NC98 1476 aa23.08■■□□□ 1.29
RAB3IP-216ENST00000552199 EIF4G1Q04637 1599 aaKnown RBP23.08■■□□□ 1.28
RAB3IP-216ENST00000552199 LOC105371045A0A1W2PR82 267 aa23.01■■□□□ 1.27
RAB3IP-216ENST00000552199 ATAD2BQ9ULI0 1458 aa22.94■■□□□ 1.26
RAB3IP-216ENST00000552199 BAZ1BQ9UIG0 1483 aaKnown RBP22.83■■□□□ 1.25
RAB3IP-216ENST00000552199 FAM9AQ8IZU1 332 aaPredicted RBP22.77■■□□□ 1.24
RAB3IP-216ENST00000552199 ABCC8Q09428 1581 aa22.76■■□□□ 1.23
RAB3IP-216ENST00000552199 NCAPD3P42695 1498 aa22.64■■□□□ 1.22
RAB3IP-216ENST00000552199 HMGXB3Q12766 1538 aa22.63■■□□□ 1.21
RAB3IP-216ENST00000552199 WRNQ14191 1432 aaPredicted RBP eCLIP22.52■■□□□ 1.2
RAB3IP-216ENST00000552199 EHMT2Q96KQ7 1210 aa22.47■■□□□ 1.19
RAB3IP-216ENST00000552199 PCGF6Q9BYE7 350 aa22.44■■□□□ 1.18
RAB3IP-216ENST00000552199 SOGA1O94964 1423 aa22.44■■□□□ 1.18
RAB3IP-216ENST00000552199 SYNJ1O43426 1573 aa22.43■■□□□ 1.18
RAB3IP-216ENST00000552199 EEA1Q15075 1411 aa22.42■■□□□ 1.18
RAB3IP-216ENST00000552199 RUSC2Q8N2Y8 1516 aa22.34■■□□□ 1.17
RAB3IP-216ENST00000552199 CSRNP3Q8WYN3 585 aa22.31■■□□□ 1.16
RAB3IP-216ENST00000552199 CC2D2AQ9P2K1 1620 aa22.3■■□□□ 1.16
RAB3IP-216ENST00000552199 TRIM26Q12899 539 aaPredicted RBP22.28■■□□□ 1.16
RAB3IP-216ENST00000552199 TOP2BQ02880 1626 aa22.28■■□□□ 1.16
RAB3IP-216ENST00000552199 CFTRP13569 1480 aa22.28■■□□□ 1.16
RAB3IP-216ENST00000552199 BIVM-ERCC5R4GMW8 1640 aa22.24■■□□□ 1.15
RAB3IP-216ENST00000552199 TNIKQ9UKE5 1360 aa22.2■■□□□ 1.14
RAB3IP-216ENST00000552199 PRDM2Q13029 1718 aa22.18■■□□□ 1.14
RAB3IP-216ENST00000552199 HRCP23327 699 aa22.16■■□□□ 1.14
RAB3IP-216ENST00000552199 GOLGA3Q08378 1498 aa22.16■■□□□ 1.14
RAB3IP-216ENST00000552199 CUX1P39880 1505 aa22.12■■□□□ 1.13
RAB3IP-216ENST00000552199 KIF21BO75037 1637 aa22.12■■□□□ 1.13
RAB3IP-216ENST00000552199 CEP162Q5TB80 1403 aa22.12■■□□□ 1.13
RAB3IP-216ENST00000552199 CADPSQ9ULU8 1353 aa22.12■■□□□ 1.13
RAB3IP-216ENST00000552199 CEP164Q9UPV0 1460 aa22.11■■□□□ 1.13
RAB3IP-216ENST00000552199 UBTFP17480 764 aaKnown RBP22.08■■□□□ 1.13
RAB3IP-216ENST00000552199 RAPGEF2Q9Y4G8 1499 aa21.95■■□□□ 1.1
RAB3IP-216ENST00000552199 KIF27Q86VH2 1401 aa21.9■■□□□ 1.1
RAB3IP-216ENST00000552199 PPARGC1BQ86YN6 1023 aaKnown RBP21.9■■□□□ 1.1
RAB3IP-216ENST00000552199 PRXQ9BXM0 1461 aa21.88■■□□□ 1.09
RAB3IP-216ENST00000552199 FANCD2Q9BXW9 1451 aa21.88■■□□□ 1.09
RAB3IP-216ENST00000552199 ERICH3Q5RHP9 1530 aa21.87■■□□□ 1.09
RAB3IP-216ENST00000552199 CLIP1P30622 1438 aa21.84■■□□□ 1.09
RAB3IP-216ENST00000552199 NESP48681 1621 aa21.81■■□□□ 1.08
RAB3IP-216ENST00000552199 FGD5Q6ZNL6 1462 aa21.8■■□□□ 1.08
RAB3IP-216ENST00000552199 LAMC3Q9Y6N6 1575 aa21.78■■□□□ 1.08
RAB3IP-216ENST00000552199 CUX2O14529 1486 aa21.76■■□□□ 1.07
RAB3IP-216ENST00000552199 DNMBPQ6XZF7 1577 aa21.75■■□□□ 1.07
RAB3IP-216ENST00000552199 VPS8Q8N3P4 1428 aa21.7■■□□□ 1.06
RAB3IP-216ENST00000552199 TOPBP1Q92547 1522 aa21.7■■□□□ 1.06
RAB3IP-216ENST00000552199 IGF1RP08069 1367 aa21.69■■□□□ 1.06
RAB3IP-216ENST00000552199 DNAJC5BQ9UF47 199 aa21.68■■□□□ 1.06
RAB3IP-216ENST00000552199 RANGAP1P46060 587 aaPredicted RBP21.63■■□□□ 1.05
RAB3IP-216ENST00000552199 POLA1P09884 1462 aaPredicted RBP21.62■■□□□ 1.05
RAB3IP-216ENST00000552199 ZEB1P37275 1124 aaPredicted RBP21.62■■□□□ 1.05
RAB3IP-216ENST00000552199 TTBK1Q5TCY1 1321 aaPredicted RBP21.62■■□□□ 1.05
RAB3IP-216ENST00000552199 PDS5BQ9NTI5 1447 aa21.61■■□□□ 1.05
RAB3IP-216ENST00000552199 ABCA10Q8WWZ4 1543 aa21.6■■□□□ 1.05
RAB3IP-216ENST00000552199 URB2Q14146 1524 aaKnown RBP21.59■■□□□ 1.05
RAB3IP-216ENST00000552199 RAD54L2Q9Y4B4 1467 aa21.59■■□□□ 1.05
RAB3IP-216ENST00000552199 CARMIL1Q5VZK9 1371 aa21.58■■□□□ 1.05
RAB3IP-216ENST00000552199 ARAP1Q96P48 1450 aa21.57■■□□□ 1.04
RAB3IP-216ENST00000552199 KIF21AQ7Z4S6 1674 aa21.53■■□□□ 1.04
RAB3IP-216ENST00000552199 APLP2Q06481 763 aa21.52■■□□□ 1.04
RAB3IP-216ENST00000552199 WDR97A6NE52 1622 aa21.49■■□□□ 1.03
RAB3IP-216ENST00000552199 ARHGAP35Q9NRY4 1499 aa21.48■■□□□ 1.03
RAB3IP-216ENST00000552199 CUL7Q14999 1698 aa21.44■■□□□ 1.02
RAB3IP-216ENST00000552199 ABCA5Q8WWZ7 1642 aa21.39■■□□□ 1.01
RAB3IP-216ENST00000552199 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.37■■□□□ 1.01
RAB3IP-216ENST00000552199 TDRD9Q8NDG6 1382 aaKnown RBP21.34■■□□□ 1.01
RAB3IP-216ENST00000552199 CCER1Q8TC90 406 aaPredicted RBP21.33■■□□□ 1.01
RAB3IP-216ENST00000552199 GAPVD1Q14C86 1478 aa21.33■■□□□ 1.01
RAB3IP-216ENST00000552199 TARBP1Q13395 1621 aaKnown RBP21.33■■□□□ 1
RAB3IP-216ENST00000552199 MRC2Q9UBG0 1479 aa21.31■■□□□ 1
RAB3IP-216ENST00000552199 CTTNBP2Q8WZ74 1663 aa21.29■■□□□ 1
RAB3IP-216ENST00000552199 KANK4Q5T7N3 995 aaPredicted RBP21.28■■□□□ 1
RAB3IP-216ENST00000552199 EFCAB5A4FU69 1503 aa21.22■□□□□ 0.99
RAB3IP-216ENST00000552199 MAP3K1Q13233 1512 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms