RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 NISCHQ9Y2I1 1504 aa30.82■■■□□ 2.52
PTCH1-222ENST00000551425 ABCC9O60706 1549 aa28.47■■■□□ 2.15
PTCH1-222ENST00000551425 CCDC180Q9P1Z9 1646 aa27.89■■■□□ 2.06
PTCH1-222ENST00000551425 DNAJC5BQ9UF47 199 aa27.29■■□□□ 1.96
PTCH1-222ENST00000551425 RB1CC1Q8TDY2 1594 aa26.85■■□□□ 1.89
PTCH1-222ENST00000551425 NACADO15069 1562 aa26.54■■□□□ 1.84
PTCH1-222ENST00000551425 PABPN1Q86U42 306 aaKnown RBP eCLIP26.42■■□□□ 1.82
PTCH1-222ENST00000551425 DCAF8L2P0C7V8 631 aa26.21■■□□□ 1.79
PTCH1-222ENST00000551425 UNC13AQ9UPW8 1703 aa26.16■■□□□ 1.78
PTCH1-222ENST00000551425 BICRAQ9NZM4 1560 aa26.1■■□□□ 1.77
PTCH1-222ENST00000551425 MYO15BQ96JP2 1530 aa26.04■■□□□ 1.76
PTCH1-222ENST00000551425 SHROOM4Q9ULL8 1493 aa25.75■■□□□ 1.71
PTCH1-222ENST00000551425 CECR2Q9BXF3 1484 aa25.74■■□□□ 1.71
PTCH1-222ENST00000551425 CC2D2AQ9P2K1 1620 aa25.69■■□□□ 1.7
PTCH1-222ENST00000551425 DNAJC5Q9H3Z4 198 aa25.53■■□□□ 1.68
PTCH1-222ENST00000551425 EIF4G1Q04637 1599 aaKnown RBP25.5■■□□□ 1.67
PTCH1-222ENST00000551425 DCAF1Q9Y4B6 1507 aa25.46■■□□□ 1.67
PTCH1-222ENST00000551425 ZCCHC6Q5VYS8 1495 aaKnown RBP25.41■■□□□ 1.66
PTCH1-222ENST00000551425 SCRIBQ14160 1630 aa25.34■■□□□ 1.65
PTCH1-222ENST00000551425 CUX2O14529 1486 aa24.84■■□□□ 1.57
PTCH1-222ENST00000551425 ERCC6Q03468 1493 aa24.63■■□□□ 1.53
PTCH1-222ENST00000551425 NCAPD3P42695 1498 aa24.55■■□□□ 1.52
PTCH1-222ENST00000551425 ATAD2BQ9ULI0 1458 aa24.35■■□□□ 1.49
PTCH1-222ENST00000551425 NESP48681 1621 aa24.28■■□□□ 1.48
PTCH1-222ENST00000551425 HMGXB3Q12766 1538 aa24.28■■□□□ 1.48
PTCH1-222ENST00000551425 SMARCA2P51531 1590 aa24.25■■□□□ 1.47
PTCH1-222ENST00000551425 THOC2Q8NI27 1593 aaKnown RBP24.16■■□□□ 1.46
PTCH1-222ENST00000551425 SMARCA4P51532 1647 aa24.14■■□□□ 1.46
PTCH1-222ENST00000551425 TRIM41Q8WV44 630 aa24.08■■□□□ 1.45
PTCH1-222ENST00000551425 BAZ1BQ9UIG0 1483 aaKnown RBP24.07■■□□□ 1.44
PTCH1-222ENST00000551425 LAMC3Q9Y6N6 1575 aa24.05■■□□□ 1.44
PTCH1-222ENST00000551425 PEG3Q9GZU2 1588 aa23.95■■□□□ 1.43
PTCH1-222ENST00000551425 BAZ1AQ9NRL2 1556 aaPredicted RBP23.95■■□□□ 1.43
PTCH1-222ENST00000551425 PDS5BQ9NTI5 1447 aa23.95■■□□□ 1.42
PTCH1-222ENST00000551425 KIF21AQ7Z4S6 1674 aa23.9■■□□□ 1.42
PTCH1-222ENST00000551425 MRC2Q9UBG0 1479 aa23.76■■□□□ 1.39
PTCH1-222ENST00000551425 CADPSQ9ULU8 1353 aa23.76■■□□□ 1.39
PTCH1-222ENST00000551425 WDR62O43379 1518 aa23.73■■□□□ 1.39
PTCH1-222ENST00000551425 MROH2BQ7Z745 1585 aa23.72■■□□□ 1.39
PTCH1-222ENST00000551425 OSCARQ8IYS5 282 aa23.61■■□□□ 1.37
PTCH1-222ENST00000551425 CEP164Q9UPV0 1460 aa23.54■■□□□ 1.36
PTCH1-222ENST00000551425 FANCD2Q9BXW9 1451 aa23.46■■□□□ 1.35
PTCH1-222ENST00000551425 CFTRP13569 1480 aa23.36■■□□□ 1.33
PTCH1-222ENST00000551425 WIZO95785 1651 aa23.36■■□□□ 1.33
PTCH1-222ENST00000551425 RIMBP3CA6NJZ7 1639 aa23.31■■□□□ 1.32
PTCH1-222ENST00000551425 RIMBP3BA6NNM3 1639 aa23.31■■□□□ 1.32
PTCH1-222ENST00000551425 RIMBP3Q9UFD9 1639 aa23.31■■□□□ 1.32
PTCH1-222ENST00000551425 URB2Q14146 1524 aaKnown RBP23.31■■□□□ 1.32
PTCH1-222ENST00000551425 ARHGEF11O15085 1522 aa23.2■■□□□ 1.3
PTCH1-222ENST00000551425 IFT140Q96RY7 1462 aa23.11■■□□□ 1.29
PTCH1-222ENST00000551425 ZNF608Q9ULD9 1512 aaPredicted RBP23.11■■□□□ 1.29
PTCH1-222ENST00000551425 TOP2AP11388 1531 aaKnown RBP23.08■■□□□ 1.28
PTCH1-222ENST00000551425 CYB5RLQ6IPT4 315 aa23.06■■□□□ 1.28
PTCH1-222ENST00000551425 RSF1Q96T23 1441 aaPredicted RBP23.04■■□□□ 1.28
PTCH1-222ENST00000551425 TRHP20396 242 aaPredicted RBP22.98■■□□□ 1.27
PTCH1-222ENST00000551425 PRDM2Q13029 1718 aa22.96■■□□□ 1.27
PTCH1-222ENST00000551425 TOPBP1Q92547 1522 aa22.95■■□□□ 1.26
PTCH1-222ENST00000551425 ARAP1Q96P48 1450 aa22.93■■□□□ 1.26
PTCH1-222ENST00000551425 EIF4G3O43432 1585 aaKnown RBP22.93■■□□□ 1.26
PTCH1-222ENST00000551425 ABCC8Q09428 1581 aa22.89■■□□□ 1.25
PTCH1-222ENST00000551425 CHD1O14646 1710 aa22.83■■□□□ 1.25
PTCH1-222ENST00000551425 AQRO60306 1485 aaKnown RBP eCLIP22.83■■□□□ 1.25
PTCH1-222ENST00000551425 CCDC88BA6NC98 1476 aa22.82■■□□□ 1.24
PTCH1-222ENST00000551425 DNMBPQ6XZF7 1577 aa22.8■■□□□ 1.24
PTCH1-222ENST00000551425 TARBP1Q13395 1621 aaKnown RBP22.78■■□□□ 1.24
PTCH1-222ENST00000551425 FBLN2P98095 1184 aa22.77■■□□□ 1.24
PTCH1-222ENST00000551425 AEBP2Q6ZN18 517 aaPredicted RBP22.76■■□□□ 1.23
PTCH1-222ENST00000551425 POLA1P09884 1462 aaPredicted RBP22.67■■□□□ 1.22
PTCH1-222ENST00000551425 CLASP1Q7Z460 1538 aa22.63■■□□□ 1.21
PTCH1-222ENST00000551425 TDRD9Q8NDG6 1382 aaKnown RBP22.6■■□□□ 1.21
PTCH1-222ENST00000551425 RAD54L2Q9Y4B4 1467 aa22.59■■□□□ 1.21
PTCH1-222ENST00000551425 SNAPC4Q5SXM2 1469 aa22.57■■□□□ 1.2
PTCH1-222ENST00000551425 SOGA1O94964 1423 aa22.57■■□□□ 1.2
PTCH1-222ENST00000551425 SYNJ1O43426 1573 aa22.55■■□□□ 1.2
PTCH1-222ENST00000551425 CHMP7Q8WUX9 453 aaPredicted RBP22.54■■□□□ 1.2
PTCH1-222ENST00000551425 WDR97A6NE52 1622 aa22.53■■□□□ 1.2
PTCH1-222ENST00000551425 MAGI1Q96QZ7 1491 aaPredicted RBP22.52■■□□□ 1.2
PTCH1-222ENST00000551425 GRIN2BQ13224 1484 aa22.45■■□□□ 1.18
PTCH1-222ENST00000551425 SYNJ2O15056 1496 aa22.44■■□□□ 1.18
PTCH1-222ENST00000551425 FGD5Q6ZNL6 1462 aa22.44■■□□□ 1.18
PTCH1-222ENST00000551425 GAPVD1Q14C86 1478 aa22.43■■□□□ 1.18
PTCH1-222ENST00000551425 CUX1P39880 1505 aa22.32■■□□□ 1.16
PTCH1-222ENST00000551425 PBRM1Q86U86 1689 aa22.23■■□□□ 1.15
PTCH1-222ENST00000551425 ERCC6L2Q5T890 1561 aa22.21■■□□□ 1.15
PTCH1-222ENST00000551425 ABCA10Q8WWZ4 1543 aa22.17■■□□□ 1.14
PTCH1-222ENST00000551425 ABCA5Q8WWZ7 1642 aa22.17■■□□□ 1.14
PTCH1-222ENST00000551425 GRIN2AQ12879 1464 aa22.15■■□□□ 1.14
PTCH1-222ENST00000551425 CEP170Q5SW79 1584 aa22.13■■□□□ 1.13
PTCH1-222ENST00000551425 NUP160Q12769 1436 aa22.13■■□□□ 1.13
PTCH1-222ENST00000551425 SHROOM2Q13796 1616 aa22.06■■□□□ 1.12
PTCH1-222ENST00000551425 ADAMTS12P58397 1594 aa22.04■■□□□ 1.12
PTCH1-222ENST00000551425 KIF13AQ9H1H9 1805 aa22.04■■□□□ 1.12
PTCH1-222ENST00000551425 FHAD1B1AJZ9 1412 aa21.99■■□□□ 1.11
PTCH1-222ENST00000551425 WRNQ14191 1432 aaPredicted RBP eCLIP21.97■■□□□ 1.11
PTCH1-222ENST00000551425 PRG4Q92954 1404 aaPredicted RBP21.94■■□□□ 1.1
PTCH1-222ENST00000551425 ABCC10Q5T3U5 1492 aa21.94■■□□□ 1.1
PTCH1-222ENST00000551425 FAM69CQ0P6D2 419 aa21.93■■□□□ 1.1
PTCH1-222ENST00000551425 KDM4FA0A1W2PPD8 638 aa21.9■■□□□ 1.1
PTCH1-222ENST00000551425 JPH4Q96JJ6 628 aa21.88■■□□□ 1.09
PTCH1-222ENST00000551425 ERICH3Q5RHP9 1530 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms