RNA–Protein interactions for RNA: ENST00000551355.5

NEK3-203, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 727 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-203ENST00000551355 NISCHQ9Y2I1 1504 aa24.11■■□□□ 1.45
NEK3-203ENST00000551355 CCDC180Q9P1Z9 1646 aa21.17■□□□□ 0.98
NEK3-203ENST00000551355 ABCC9O60706 1549 aa20.21■□□□□ 0.83
NEK3-203ENST00000551355 ZCCHC6Q5VYS8 1495 aaKnown RBP20.19■□□□□ 0.82
NEK3-203ENST00000551355 DCAF1Q9Y4B6 1507 aa20.03■□□□□ 0.8
NEK3-203ENST00000551355 DCAF8L2P0C7V8 631 aa19.95■□□□□ 0.78
NEK3-203ENST00000551355 MYO15BQ96JP2 1530 aa19.94■□□□□ 0.78
NEK3-203ENST00000551355 NACADO15069 1562 aa19.85■□□□□ 0.77
NEK3-203ENST00000551355 RB1CC1Q8TDY2 1594 aa19.72■□□□□ 0.75
NEK3-203ENST00000551355 SCRIBQ14160 1630 aa19.32■□□□□ 0.68
NEK3-203ENST00000551355 SHROOM4Q9ULL8 1493 aa19.31■□□□□ 0.68
NEK3-203ENST00000551355 UNC13AQ9UPW8 1703 aa19.09■□□□□ 0.65
NEK3-203ENST00000551355 BICRAQ9NZM4 1560 aa19.02■□□□□ 0.64
NEK3-203ENST00000551355 PABPN1Q86U42 306 aaKnown RBP eCLIP18.99■□□□□ 0.63
NEK3-203ENST00000551355 AEBP2Q6ZN18 517 aaPredicted RBP18.72■□□□□ 0.59
NEK3-203ENST00000551355 BAZ1AQ9NRL2 1556 aaPredicted RBP18.68■□□□□ 0.58
NEK3-203ENST00000551355 CECR2Q9BXF3 1484 aa18.67■□□□□ 0.58
NEK3-203ENST00000551355 RSF1Q96T23 1441 aaPredicted RBP18.58■□□□□ 0.57
NEK3-203ENST00000551355 SMARCA4P51532 1647 aa18.56■□□□□ 0.56
NEK3-203ENST00000551355 MROH2BQ7Z745 1585 aa18.55■□□□□ 0.56
NEK3-203ENST00000551355 EIF4G1Q04637 1599 aaKnown RBP18.51■□□□□ 0.55
NEK3-203ENST00000551355 SUPT5HO00267 1087 aaKnown RBP18.5■□□□□ 0.55
NEK3-203ENST00000551355 PEG3Q9GZU2 1588 aa18.42■□□□□ 0.54
NEK3-203ENST00000551355 SMARCA2P51531 1590 aa18.4■□□□□ 0.54
NEK3-203ENST00000551355 ATAD2BQ9ULI0 1458 aa18.38■□□□□ 0.53
NEK3-203ENST00000551355 WIZO95785 1651 aa18.33■□□□□ 0.52
NEK3-203ENST00000551355 NCAPD3P42695 1498 aa18.33■□□□□ 0.52
NEK3-203ENST00000551355 CC2D2AQ9P2K1 1620 aa18.29■□□□□ 0.52
NEK3-203ENST00000551355 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
NEK3-203ENST00000551355 HMGXB3Q12766 1538 aa18.25■□□□□ 0.51
NEK3-203ENST00000551355 TOP2AP11388 1531 aaKnown RBP18.24■□□□□ 0.51
NEK3-203ENST00000551355 DNAJC5BQ9UF47 199 aa18.05■□□□□ 0.48
NEK3-203ENST00000551355 CCDC88BA6NC98 1476 aa18.03■□□□□ 0.48
NEK3-203ENST00000551355 CADPSQ9ULU8 1353 aa17.82■□□□□ 0.44
NEK3-203ENST00000551355 CHIC1Q5VXU3 224 aa17.82■□□□□ 0.44
NEK3-203ENST00000551355 CFTRP13569 1480 aa17.81■□□□□ 0.44
NEK3-203ENST00000551355 LAMC3Q9Y6N6 1575 aa17.72■□□□□ 0.43
NEK3-203ENST00000551355 PDS5BQ9NTI5 1447 aa17.64■□□□□ 0.42
NEK3-203ENST00000551355 NESP48681 1621 aa17.61■□□□□ 0.41
NEK3-203ENST00000551355 FANCD2Q9BXW9 1451 aa17.58■□□□□ 0.41
NEK3-203ENST00000551355 PRDM2Q13029 1718 aa17.58■□□□□ 0.4
NEK3-203ENST00000551355 WRNQ14191 1432 aaPredicted RBP eCLIP17.53■□□□□ 0.4
NEK3-203ENST00000551355 CEP164Q9UPV0 1460 aa17.51■□□□□ 0.39
NEK3-203ENST00000551355 TRIM41Q8WV44 630 aa17.51■□□□□ 0.39
NEK3-203ENST00000551355 ABCC8Q09428 1581 aa17.46■□□□□ 0.39
NEK3-203ENST00000551355 ERCC6Q03468 1493 aa17.44■□□□□ 0.38
NEK3-203ENST00000551355 TOP2BQ02880 1626 aa17.38■□□□□ 0.37
NEK3-203ENST00000551355 MRC2Q9UBG0 1479 aa17.37■□□□□ 0.37
NEK3-203ENST00000551355 CUX1P39880 1505 aa17.37■□□□□ 0.37
NEK3-203ENST00000551355 DNMBPQ6XZF7 1577 aa17.36■□□□□ 0.37
NEK3-203ENST00000551355 KIF21AQ7Z4S6 1674 aa17.36■□□□□ 0.37
NEK3-203ENST00000551355 SYNJ1O43426 1573 aa17.36■□□□□ 0.37
NEK3-203ENST00000551355 BIVM-ERCC5R4GMW8 1640 aa17.35■□□□□ 0.37
NEK3-203ENST00000551355 TOPBP1Q92547 1522 aa17.34■□□□□ 0.37
NEK3-203ENST00000551355 URB2Q14146 1524 aaKnown RBP17.33■□□□□ 0.37
NEK3-203ENST00000551355 WDR62O43379 1518 aa17.28■□□□□ 0.36
NEK3-203ENST00000551355 FGD5Q6ZNL6 1462 aa17.25■□□□□ 0.35
NEK3-203ENST00000551355 POLA1P09884 1462 aaPredicted RBP17.23■□□□□ 0.35
NEK3-203ENST00000551355 THOC2Q8NI27 1593 aaKnown RBP17.23■□□□□ 0.35
NEK3-203ENST00000551355 SOGA1O94964 1423 aa17.21■□□□□ 0.34
NEK3-203ENST00000551355 EEA1Q15075 1411 aa17.21■□□□□ 0.34
NEK3-203ENST00000551355 KIF27Q86VH2 1401 aa17.15■□□□□ 0.34
NEK3-203ENST00000551355 IFT140Q96RY7 1462 aa17.15■□□□□ 0.34
NEK3-203ENST00000551355 ABCA10Q8WWZ4 1543 aa17.15■□□□□ 0.34
NEK3-203ENST00000551355 CUX2O14529 1486 aa17.12■□□□□ 0.33
NEK3-203ENST00000551355 RAD54L2Q9Y4B4 1467 aa17.12■□□□□ 0.33
NEK3-203ENST00000551355 CSRNP3Q8WYN3 585 aa17.08■□□□□ 0.32
NEK3-203ENST00000551355 TARBP1Q13395 1621 aaKnown RBP17.07■□□□□ 0.32
NEK3-203ENST00000551355 WDR97A6NE52 1622 aa17.06■□□□□ 0.32
NEK3-203ENST00000551355 FAM9AQ8IZU1 332 aaPredicted RBP17.05■□□□□ 0.32
NEK3-203ENST00000551355 RUSC2Q8N2Y8 1516 aa17.02■□□□□ 0.32
NEK3-203ENST00000551355 TDRD9Q8NDG6 1382 aaKnown RBP17.02■□□□□ 0.31
NEK3-203ENST00000551355 GAPVD1Q14C86 1478 aa17■□□□□ 0.31
NEK3-203ENST00000551355 IGF1RP08069 1367 aa17■□□□□ 0.31
NEK3-203ENST00000551355 ABCA5Q8WWZ7 1642 aa16.97■□□□□ 0.31
NEK3-203ENST00000551355 ERICH3Q5RHP9 1530 aa16.96■□□□□ 0.31
NEK3-203ENST00000551355 AQRO60306 1485 aaKnown RBP eCLIP16.94■□□□□ 0.35e-7■■■■■ 27.6
NEK3-203ENST00000551355 GRIN2BQ13224 1484 aa16.94■□□□□ 0.3
NEK3-203ENST00000551355 ZNF608Q9ULD9 1512 aaPredicted RBP16.94■□□□□ 0.3
NEK3-203ENST00000551355 PRXQ9BXM0 1461 aa16.92■□□□□ 0.3
NEK3-203ENST00000551355 CARMIL1Q5VZK9 1371 aa16.91■□□□□ 0.3
NEK3-203ENST00000551355 EIF4G3O43432 1585 aaKnown RBP16.89■□□□□ 0.29
NEK3-203ENST00000551355 KIF21BO75037 1637 aa16.88■□□□□ 0.29
NEK3-203ENST00000551355 GOLGA3Q08378 1498 aa16.87■□□□□ 0.29
NEK3-203ENST00000551355 CUL7Q14999 1698 aa16.87■□□□□ 0.29
NEK3-203ENST00000551355 RAPGEF2Q9Y4G8 1499 aa16.86■□□□□ 0.29
NEK3-203ENST00000551355 FHAD1B1AJZ9 1412 aa16.86■□□□□ 0.29
NEK3-203ENST00000551355 MAGI1Q96QZ7 1491 aaPredicted RBP16.85■□□□□ 0.29
NEK3-203ENST00000551355 LOC105371045A0A1W2PR82 267 aa16.83■□□□□ 0.28
NEK3-203ENST00000551355 PBRM1Q86U86 1689 aa16.81■□□□□ 0.28
NEK3-203ENST00000551355 SNAPC4Q5SXM2 1469 aa16.8■□□□□ 0.28
NEK3-203ENST00000551355 UBTFP17480 764 aaKnown RBP16.8■□□□□ 0.28
NEK3-203ENST00000551355 TNIKQ9UKE5 1360 aa16.78■□□□□ 0.28
NEK3-203ENST00000551355 ADAMTS12P58397 1594 aa16.77■□□□□ 0.28
NEK3-203ENST00000551355 SYNJ2O15056 1496 aa16.77■□□□□ 0.28
NEK3-203ENST00000551355 CHMP7Q8WUX9 453 aaPredicted RBP16.76■□□□□ 0.27
NEK3-203ENST00000551355 EHMT2Q96KQ7 1210 aa16.74■□□□□ 0.27
NEK3-203ENST00000551355 GRIN2AQ12879 1464 aa16.7■□□□□ 0.26
NEK3-203ENST00000551355 FBLN2P98095 1184 aa16.68■□□□□ 0.26
NEK3-203ENST00000551355 NUP160Q12769 1436 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms