RNA–Protein interactions for RNA: ENST00000549963.1

GPN3-206, Transcript of GPN-loop GTPase 3, humanhuman

TSL 3

Gene GPN3, Length 497 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN3-206ENST00000549963 NISCHQ9Y2I1 1504 aa35.78■■■■□ 3.32
GPN3-206ENST00000549963 CCDC180Q9P1Z9 1646 aa31.76■■■□□ 2.67
GPN3-206ENST00000549963 ABCC9O60706 1549 aa30.94■■■□□ 2.54
GPN3-206ENST00000549963 DCAF8L2P0C7V8 631 aa30.01■■■□□ 2.39
GPN3-206ENST00000549963 RB1CC1Q8TDY2 1594 aa29.87■■■□□ 2.37
GPN3-206ENST00000549963 NACADO15069 1562 aa29.86■■■□□ 2.37
GPN3-206ENST00000549963 ZCCHC6Q5VYS8 1495 aaKnown RBP29.79■■■□□ 2.36
GPN3-206ENST00000549963 MYO15BQ96JP2 1530 aa29.7■■■□□ 2.34
GPN3-206ENST00000549963 DCAF1Q9Y4B6 1507 aa29.61■■■□□ 2.33
GPN3-206ENST00000549963 UNC13AQ9UPW8 1703 aa29.13■■■□□ 2.25
GPN3-206ENST00000549963 PABPN1Q86U42 306 aaKnown RBP eCLIP28.97■■■□□ 2.23
GPN3-206ENST00000549963 SCRIBQ14160 1630 aa28.97■■■□□ 2.23
GPN3-206ENST00000549963 BICRAQ9NZM4 1560 aa28.84■■■□□ 2.21
GPN3-206ENST00000549963 SHROOM4Q9ULL8 1493 aa28.64■■■□□ 2.17
GPN3-206ENST00000549963 DNAJC5BQ9UF47 199 aa28.24■■■□□ 2.11
GPN3-206ENST00000549963 EIF4G1Q04637 1599 aaKnown RBP28.12■■■□□ 2.09
GPN3-206ENST00000549963 CC2D2AQ9P2K1 1620 aa27.99■■■□□ 2.07
GPN3-206ENST00000549963 CECR2Q9BXF3 1484 aa27.82■■■□□ 2.04
GPN3-206ENST00000549963 BAZ1AQ9NRL2 1556 aaPredicted RBP27.75■■■□□ 2.03
GPN3-206ENST00000549963 SMARCA4P51532 1647 aa27.72■■■□□ 2.03
GPN3-206ENST00000549963 SMARCA2P51531 1590 aa27.57■■■□□ 2
GPN3-206ENST00000549963 MROH2BQ7Z745 1585 aa27.54■■■□□ 2
GPN3-206ENST00000549963 ATAD2BQ9ULI0 1458 aa27.54■■■□□ 2
GPN3-206ENST00000549963 NCAPD3P42695 1498 aa27.53■■■□□ 2
GPN3-206ENST00000549963 PEG3Q9GZU2 1588 aa27.43■■□□□ 1.98
GPN3-206ENST00000549963 HMGXB3Q12766 1538 aa27.38■■□□□ 1.97
GPN3-206ENST00000549963 BAZ1BQ9UIG0 1483 aaKnown RBP27.37■■□□□ 1.97
GPN3-206ENST00000549963 RSF1Q96T23 1441 aaPredicted RBP27.3■■□□□ 1.96
GPN3-206ENST00000549963 WIZO95785 1651 aa27.28■■□□□ 1.96
GPN3-206ENST00000549963 TOP2AP11388 1531 aaKnown RBP27■■□□□ 1.91
GPN3-206ENST00000549963 SUPT5HO00267 1087 aaKnown RBP26.84■■□□□ 1.89
GPN3-206ENST00000549963 LAMC3Q9Y6N6 1575 aa26.8■■□□□ 1.88
GPN3-206ENST00000549963 NESP48681 1621 aa26.77■■□□□ 1.88
GPN3-206ENST00000549963 CADPSQ9ULU8 1353 aa26.76■■□□□ 1.87
GPN3-206ENST00000549963 ERCC6Q03468 1493 aa26.73■■□□□ 1.87
GPN3-206ENST00000549963 CCDC88BA6NC98 1476 aa26.7■■□□□ 1.87
GPN3-206ENST00000549963 PDS5BQ9NTI5 1447 aa26.66■■□□□ 1.86
GPN3-206ENST00000549963 CFTRP13569 1480 aa26.59■■□□□ 1.85
GPN3-206ENST00000549963 KIF21AQ7Z4S6 1674 aa26.49■■□□□ 1.83
GPN3-206ENST00000549963 PRDM2Q13029 1718 aa26.44■■□□□ 1.82
GPN3-206ENST00000549963 FANCD2Q9BXW9 1451 aa26.43■■□□□ 1.82
GPN3-206ENST00000549963 CEP164Q9UPV0 1460 aa26.4■■□□□ 1.82
GPN3-206ENST00000549963 CUX2O14529 1486 aa26.36■■□□□ 1.81
GPN3-206ENST00000549963 THOC2Q8NI27 1593 aaKnown RBP26.32■■□□□ 1.8
GPN3-206ENST00000549963 MRC2Q9UBG0 1479 aa26.31■■□□□ 1.8
GPN3-206ENST00000549963 WDR62O43379 1518 aa26.19■■□□□ 1.78
GPN3-206ENST00000549963 ABCC8Q09428 1581 aa26.12■■□□□ 1.77
GPN3-206ENST00000549963 URB2Q14146 1524 aaKnown RBP26.11■■□□□ 1.77
GPN3-206ENST00000549963 TOPBP1Q92547 1522 aa26.01■■□□□ 1.75
GPN3-206ENST00000549963 DNMBPQ6XZF7 1577 aa26■■□□□ 1.75
GPN3-206ENST00000549963 IFT140Q96RY7 1462 aa25.85■■□□□ 1.73
GPN3-206ENST00000549963 CUX1P39880 1505 aa25.83■■□□□ 1.72
GPN3-206ENST00000549963 POLA1P09884 1462 aaPredicted RBP25.79■■□□□ 1.72
GPN3-206ENST00000549963 WRNQ14191 1432 aaPredicted RBP eCLIP25.78■■□□□ 1.72
GPN3-206ENST00000549963 SOGA1O94964 1423 aa25.76■■□□□ 1.71
GPN3-206ENST00000549963 FGD5Q6ZNL6 1462 aa25.75■■□□□ 1.71
GPN3-206ENST00000549963 TARBP1Q13395 1621 aaKnown RBP25.69■■□□□ 1.7
GPN3-206ENST00000549963 TOP2BQ02880 1626 aa25.68■■□□□ 1.7
GPN3-206ENST00000549963 RAD54L2Q9Y4B4 1467 aa25.67■■□□□ 1.7
GPN3-206ENST00000549963 BIVM-ERCC5R4GMW8 1640 aa25.67■■□□□ 1.7
GPN3-206ENST00000549963 ZNF608Q9ULD9 1512 aaPredicted RBP25.64■■□□□ 1.7
GPN3-206ENST00000549963 SYNJ1O43426 1573 aa25.63■■□□□ 1.69
GPN3-206ENST00000549963 AQRO60306 1485 aaKnown RBP eCLIP25.57■■□□□ 1.68
GPN3-206ENST00000549963 TDRD9Q8NDG6 1382 aaKnown RBP25.56■■□□□ 1.68
GPN3-206ENST00000549963 EIF4G3O43432 1585 aaKnown RBP25.56■■□□□ 1.68
GPN3-206ENST00000549963 WDR97A6NE52 1622 aa25.56■■□□□ 1.68
GPN3-206ENST00000549963 ABCA10Q8WWZ4 1543 aa25.52■■□□□ 1.68
GPN3-206ENST00000549963 GAPVD1Q14C86 1478 aa25.44■■□□□ 1.66
GPN3-206ENST00000549963 DNAJC5Q9H3Z4 198 aa25.43■■□□□ 1.66
GPN3-206ENST00000549963 GRIN2BQ13224 1484 aa25.42■■□□□ 1.66
GPN3-206ENST00000549963 OSCARQ8IYS5 282 aa25.39■■□□□ 1.66
GPN3-206ENST00000549963 TRIM41Q8WV44 630 aa25.38■■□□□ 1.65
GPN3-206ENST00000549963 ABCA5Q8WWZ7 1642 aa25.37■■□□□ 1.65
GPN3-206ENST00000549963 FBLN2P98095 1184 aa25.36■■□□□ 1.65
GPN3-206ENST00000549963 PBRM1Q86U86 1689 aa25.35■■□□□ 1.65
GPN3-206ENST00000549963 MAGI1Q96QZ7 1491 aaPredicted RBP25.34■■□□□ 1.65
GPN3-206ENST00000549963 SNAPC4Q5SXM2 1469 aa25.32■■□□□ 1.64
GPN3-206ENST00000549963 CHMP7Q8WUX9 453 aaPredicted RBP25.31■■□□□ 1.64
GPN3-206ENST00000549963 KIF27Q86VH2 1401 aa25.28■■□□□ 1.64
GPN3-206ENST00000549963 CHD1O14646 1710 aa25.25■■□□□ 1.63
GPN3-206ENST00000549963 ERICH3Q5RHP9 1530 aa25.24■■□□□ 1.63
GPN3-206ENST00000549963 SYNJ2O15056 1496 aa25.22■■□□□ 1.63
GPN3-206ENST00000549963 FHAD1B1AJZ9 1412 aa25.16■■□□□ 1.62
GPN3-206ENST00000549963 ADAMTS12P58397 1594 aa25.11■■□□□ 1.61
GPN3-206ENST00000549963 IGF1RP08069 1367 aa25.11■■□□□ 1.61
GPN3-206ENST00000549963 CHIC1Q5VXU3 224 aa25.08■■□□□ 1.61
GPN3-206ENST00000549963 GRIN2AQ12879 1464 aa25.06■■□□□ 1.6
GPN3-206ENST00000549963 CUL7Q14999 1698 aa25.05■■□□□ 1.6
GPN3-206ENST00000549963 CARMIL1Q5VZK9 1371 aa25.01■■□□□ 1.59
GPN3-206ENST00000549963 RUSC2Q8N2Y8 1516 aa24.98■■□□□ 1.59
GPN3-206ENST00000549963 CLASP1Q7Z460 1538 aa24.93■■□□□ 1.58
GPN3-206ENST00000549963 NUP160Q12769 1436 aa24.92■■□□□ 1.58
GPN3-206ENST00000549963 CEP170Q5SW79 1584 aa24.89■■□□□ 1.58
GPN3-206ENST00000549963 EEA1Q15075 1411 aa24.89■■□□□ 1.58
GPN3-206ENST00000549963 CSRNP3Q8WYN3 585 aa24.87■■□□□ 1.57
GPN3-206ENST00000549963 RAPGEF2Q9Y4G8 1499 aa24.86■■□□□ 1.57
GPN3-206ENST00000549963 RIMBP3CA6NJZ7 1639 aa24.84■■□□□ 1.57
GPN3-206ENST00000549963 RIMBP3BA6NNM3 1639 aa24.84■■□□□ 1.57
GPN3-206ENST00000549963 RIMBP3Q9UFD9 1639 aa24.84■■□□□ 1.57
GPN3-206ENST00000549963 ARHGEF11O15085 1522 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms