RNA–Protein interactions for RNA: ENST00000549107.5

PTPRR-208, Transcript of protein tyrosine phosphatase, receptor type R, humanhuman

TSL 2

Gene PTPRR, Length 862 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRR-208ENST00000549107 NISCHQ9Y2I1 1504 aa25.56■■□□□ 1.68
PTPRR-208ENST00000549107 CCDC180Q9P1Z9 1646 aa22.33■■□□□ 1.17
PTPRR-208ENST00000549107 AEBP2Q6ZN18 517 aaPredicted RBP22.27■■□□□ 1.16
PTPRR-208ENST00000549107 ZCCHC6Q5VYS8 1495 aaKnown RBP21.49■■□□□ 1.03
PTPRR-208ENST00000549107 DCAF1Q9Y4B6 1507 aa21.14■□□□□ 0.98
PTPRR-208ENST00000549107 ABCC9O60706 1549 aa21.08■□□□□ 0.96
PTPRR-208ENST00000549107 DCAF8L2P0C7V8 631 aa21.03■□□□□ 0.96
PTPRR-208ENST00000549107 MYO15BQ96JP2 1530 aa20.89■□□□□ 0.94
PTPRR-208ENST00000549107 SHROOM4Q9ULL8 1493 aa20.81■□□□□ 0.92
PTPRR-208ENST00000549107 NACADO15069 1562 aa20.77■□□□□ 0.92
PTPRR-208ENST00000549107 CHIC1Q5VXU3 224 aa20.69■□□□□ 0.9
PTPRR-208ENST00000549107 RB1CC1Q8TDY2 1594 aa20.59■□□□□ 0.89
PTPRR-208ENST00000549107 SCRIBQ14160 1630 aa20.52■□□□□ 0.88
PTPRR-208ENST00000549107 UNC13AQ9UPW8 1703 aa20.2■□□□□ 0.82
PTPRR-208ENST00000549107 SUPT5HO00267 1087 aaKnown RBP19.99■□□□□ 0.79
PTPRR-208ENST00000549107 BICRAQ9NZM4 1560 aa19.99■□□□□ 0.79
PTPRR-208ENST00000549107 CECR2Q9BXF3 1484 aa19.85■□□□□ 0.77
PTPRR-208ENST00000549107 PABPN1Q86U42 306 aaKnown RBP eCLIP19.84■□□□□ 0.77
PTPRR-208ENST00000549107 RSF1Q96T23 1441 aaPredicted RBP19.81■□□□□ 0.76
PTPRR-208ENST00000549107 MROH2BQ7Z745 1585 aa19.75■□□□□ 0.75
PTPRR-208ENST00000549107 BAZ1AQ9NRL2 1556 aaPredicted RBP19.74■□□□□ 0.75
PTPRR-208ENST00000549107 SMARCA4P51532 1647 aa19.67■□□□□ 0.74
PTPRR-208ENST00000549107 DNAJC5BQ9UF47 199 aa19.66■□□□□ 0.74
PTPRR-208ENST00000549107 WIZO95785 1651 aa19.59■□□□□ 0.73
PTPRR-208ENST00000549107 PEG3Q9GZU2 1588 aa19.42■□□□□ 0.7
PTPRR-208ENST00000549107 TOP2AP11388 1531 aaKnown RBP19.41■□□□□ 0.7
PTPRR-208ENST00000549107 EIF4G1Q04637 1599 aaKnown RBP19.38■□□□□ 0.69
PTPRR-208ENST00000549107 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
PTPRR-208ENST00000549107 ATAD2BQ9ULI0 1458 aa19.32■□□□□ 0.68
PTPRR-208ENST00000549107 BAZ1BQ9UIG0 1483 aaKnown RBP19.22■□□□□ 0.67
PTPRR-208ENST00000549107 CCDC88BA6NC98 1476 aa19.17■□□□□ 0.66
PTPRR-208ENST00000549107 NCAPD3P42695 1498 aa19.16■□□□□ 0.66
PTPRR-208ENST00000549107 HMGXB3Q12766 1538 aa19.15■□□□□ 0.66
PTPRR-208ENST00000549107 CC2D2AQ9P2K1 1620 aa19.09■□□□□ 0.65
PTPRR-208ENST00000549107 SENP3Q9H4L4 574 aaPredicted RBP18.91■□□□□ 0.62
PTPRR-208ENST00000549107 TRIM41Q8WV44 630 aa18.81■□□□□ 0.6
PTPRR-208ENST00000549107 ABCC8Q09428 1581 aa18.78■□□□□ 0.6
PTPRR-208ENST00000549107 CFTRP13569 1480 aa18.73■□□□□ 0.59
PTPRR-208ENST00000549107 PHF23Q9BUL5 403 aaPredicted RBP18.73■□□□□ 0.59
PTPRR-208ENST00000549107 PRDM2Q13029 1718 aa18.69■□□□□ 0.58
PTPRR-208ENST00000549107 WRNQ14191 1432 aaPredicted RBP eCLIP18.66■□□□□ 0.58
PTPRR-208ENST00000549107 CADPSQ9ULU8 1353 aa18.65■□□□□ 0.58
PTPRR-208ENST00000549107 SYNJ1O43426 1573 aa18.6■□□□□ 0.57
PTPRR-208ENST00000549107 TOP2BQ02880 1626 aa18.52■□□□□ 0.56
PTPRR-208ENST00000549107 BIVM-ERCC5R4GMW8 1640 aa18.52■□□□□ 0.56
PTPRR-208ENST00000549107 LAMC3Q9Y6N6 1575 aa18.52■□□□□ 0.56
PTPRR-208ENST00000549107 NESP48681 1621 aa18.5■□□□□ 0.55
PTPRR-208ENST00000549107 CUX1P39880 1505 aa18.48■□□□□ 0.55
PTPRR-208ENST00000549107 FANCD2Q9BXW9 1451 aa18.46■□□□□ 0.55
PTPRR-208ENST00000549107 FAM9AQ8IZU1 332 aaPredicted RBP18.46■□□□□ 0.55
PTPRR-208ENST00000549107 SOGA1O94964 1423 aa18.41■□□□□ 0.54
PTPRR-208ENST00000549107 LOC105371045A0A1W2PR82 267 aa18.4■□□□□ 0.54
PTPRR-208ENST00000549107 EEA1Q15075 1411 aa18.39■□□□□ 0.53
PTPRR-208ENST00000549107 CEP164Q9UPV0 1460 aa18.35■□□□□ 0.53
PTPRR-208ENST00000549107 PDS5BQ9NTI5 1447 aa18.35■□□□□ 0.53
PTPRR-208ENST00000549107 RUSC2Q8N2Y8 1516 aa18.34■□□□□ 0.53
PTPRR-208ENST00000549107 DNMBPQ6XZF7 1577 aa18.32■□□□□ 0.52
PTPRR-208ENST00000549107 KIF21AQ7Z4S6 1674 aa18.31■□□□□ 0.52
PTPRR-208ENST00000549107 TOPBP1Q92547 1522 aa18.27■□□□□ 0.51
PTPRR-208ENST00000549107 FGD5Q6ZNL6 1462 aa18.26■□□□□ 0.51
PTPRR-208ENST00000549107 DNAJC5Q9H3Z4 198 aa18.26■□□□□ 0.51
PTPRR-208ENST00000549107 CSRNP3Q8WYN3 585 aa18.25■□□□□ 0.51
PTPRR-208ENST00000549107 URB2Q14146 1524 aaKnown RBP18.24■□□□□ 0.51
PTPRR-208ENST00000549107 EHMT2Q96KQ7 1210 aa18.19■□□□□ 0.5
PTPRR-208ENST00000549107 KIF27Q86VH2 1401 aa18.18■□□□□ 0.5
PTPRR-208ENST00000549107 KIF21BO75037 1637 aa18.18■□□□□ 0.5
PTPRR-208ENST00000549107 POLA1P09884 1462 aaPredicted RBP18.17■□□□□ 0.5
PTPRR-208ENST00000549107 MRC2Q9UBG0 1479 aa18.15■□□□□ 0.5
PTPRR-208ENST00000549107 CUX2O14529 1486 aa18.14■□□□□ 0.5
PTPRR-208ENST00000549107 GOLGA3Q08378 1498 aa18.14■□□□□ 0.5
PTPRR-208ENST00000549107 RAD54L2Q9Y4B4 1467 aa18.11■□□□□ 0.49
PTPRR-208ENST00000549107 ABCA10Q8WWZ4 1543 aa18.1■□□□□ 0.49
PTPRR-208ENST00000549107 WDR97A6NE52 1622 aa18.09■□□□□ 0.49
PTPRR-208ENST00000549107 ERCC6Q03468 1493 aa18.07■□□□□ 0.48
PTPRR-208ENST00000549107 TNIKQ9UKE5 1360 aa18.06■□□□□ 0.48
PTPRR-208ENST00000549107 WDR62O43379 1518 aa18.06■□□□□ 0.48
PTPRR-208ENST00000549107 PRXQ9BXM0 1461 aa18.06■□□□□ 0.48
PTPRR-208ENST00000549107 RAPGEF2Q9Y4G8 1499 aa18.05■□□□□ 0.48
PTPRR-208ENST00000549107 ERICH3Q5RHP9 1530 aa18.04■□□□□ 0.48
PTPRR-208ENST00000549107 THOC2Q8NI27 1593 aaKnown RBP18.02■□□□□ 0.48
PTPRR-208ENST00000549107 UBTFP17480 764 aaKnown RBP18.01■□□□□ 0.47
PTPRR-208ENST00000549107 TARBP1Q13395 1621 aaKnown RBP18.01■□□□□ 0.47
PTPRR-208ENST00000549107 IGF1RP08069 1367 aa18■□□□□ 0.47
PTPRR-208ENST00000549107 ABCA5Q8WWZ7 1642 aa17.98■□□□□ 0.47
PTPRR-208ENST00000549107 CEP162Q5TB80 1403 aa17.98■□□□□ 0.47
PTPRR-208ENST00000549107 IFT140Q96RY7 1462 aa17.92■□□□□ 0.46
PTPRR-208ENST00000549107 CUL7Q14999 1698 aa17.92■□□□□ 0.46
PTPRR-208ENST00000549107 CARMIL1Q5VZK9 1371 aa17.91■□□□□ 0.46
PTPRR-208ENST00000549107 TDRD9Q8NDG6 1382 aaKnown RBP17.91■□□□□ 0.46
PTPRR-208ENST00000549107 GAPVD1Q14C86 1478 aa17.91■□□□□ 0.46
PTPRR-208ENST00000549107 PBRM1Q86U86 1689 aa17.86■□□□□ 0.45
PTPRR-208ENST00000549107 CLIP1P30622 1438 aa17.84■□□□□ 0.45
PTPRR-208ENST00000549107 ZNF608Q9ULD9 1512 aaPredicted RBP17.81■□□□□ 0.44
PTPRR-208ENST00000549107 AQRO60306 1485 aaKnown RBP eCLIP17.81■□□□□ 0.44
PTPRR-208ENST00000549107 FOXD1Q16676 465 aa17.79■□□□□ 0.44
PTPRR-208ENST00000549107 GRIN2BQ13224 1484 aa17.78■□□□□ 0.44
PTPRR-208ENST00000549107 EIF4G3O43432 1585 aaKnown RBP17.78■□□□□ 0.44
PTPRR-208ENST00000549107 ADAMTS12P58397 1594 aa17.76■□□□□ 0.43
PTPRR-208ENST00000549107 CTTNBP2Q8WZ74 1663 aa17.73■□□□□ 0.43
PTPRR-208ENST00000549107 FHAD1B1AJZ9 1412 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms