RNA–Protein interactions for RNA: ENST00000549034.1

RAB5B-205, Transcript of RAB5B, member RAS oncogene family, humanhuman

TSL 2

Gene RAB5B, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5B-205ENST00000549034 NISCHQ9Y2I1 1504 aa22.86■■□□□ 1.25
RAB5B-205ENST00000549034 AEBP2Q6ZN18 517 aaPredicted RBP20.89■□□□□ 0.93
RAB5B-205ENST00000549034 CHIC1Q5VXU3 224 aa20.36■□□□□ 0.85
RAB5B-205ENST00000549034 CCDC180Q9P1Z9 1646 aa20.2■□□□□ 0.82
RAB5B-205ENST00000549034 ABCC9O60706 1549 aa19.78■□□□□ 0.76
RAB5B-205ENST00000549034 DCAF8L2P0C7V8 631 aa19.31■□□□□ 0.68
RAB5B-205ENST00000549034 ZCCHC6Q5VYS8 1495 aaKnown RBP19.02■□□□□ 0.63
RAB5B-205ENST00000549034 NACADO15069 1562 aa19.02■□□□□ 0.63
RAB5B-205ENST00000549034 RB1CC1Q8TDY2 1594 aa19.02■□□□□ 0.63
RAB5B-205ENST00000549034 MYO15BQ96JP2 1530 aa18.89■□□□□ 0.61
RAB5B-205ENST00000549034 DCAF1Q9Y4B6 1507 aa18.85■□□□□ 0.61
RAB5B-205ENST00000549034 PABPN1Q86U42 306 aaKnown RBP eCLIP18.6■□□□□ 0.57
RAB5B-205ENST00000549034 UNC13AQ9UPW8 1703 aa18.59■□□□□ 0.57
RAB5B-205ENST00000549034 SCRIBQ14160 1630 aa18.52■□□□□ 0.55
RAB5B-205ENST00000549034 BICRAQ9NZM4 1560 aa18.42■□□□□ 0.54
RAB5B-205ENST00000549034 SHROOM4Q9ULL8 1493 aa18.26■□□□□ 0.51
RAB5B-205ENST00000549034 DNAJC5BQ9UF47 199 aa18.12■□□□□ 0.49
RAB5B-205ENST00000549034 EIF4G1Q04637 1599 aaKnown RBP17.93■□□□□ 0.46
RAB5B-205ENST00000549034 PHF23Q9BUL5 403 aaPredicted RBP17.92■□□□□ 0.46
RAB5B-205ENST00000549034 CC2D2AQ9P2K1 1620 aa17.86■□□□□ 0.45
RAB5B-205ENST00000549034 CECR2Q9BXF3 1484 aa17.84■□□□□ 0.45
RAB5B-205ENST00000549034 BAZ1AQ9NRL2 1556 aaPredicted RBP17.7■□□□□ 0.42
RAB5B-205ENST00000549034 SMARCA4P51532 1647 aa17.69■□□□□ 0.42
RAB5B-205ENST00000549034 SENP3Q9H4L4 574 aaPredicted RBP17.69■□□□□ 0.42
RAB5B-205ENST00000549034 MROH2BQ7Z745 1585 aa17.64■□□□□ 0.41
RAB5B-205ENST00000549034 ATAD2BQ9ULI0 1458 aa17.6■□□□□ 0.41
RAB5B-205ENST00000549034 NCAPD3P42695 1498 aa17.56■□□□□ 0.4
RAB5B-205ENST00000549034 SMARCA2P51531 1590 aa17.56■□□□□ 0.4
RAB5B-205ENST00000549034 RSF1Q96T23 1441 aaPredicted RBP17.49■□□□□ 0.39
RAB5B-205ENST00000549034 WIZO95785 1651 aa17.48■□□□□ 0.39
RAB5B-205ENST00000549034 PEG3Q9GZU2 1588 aa17.47■□□□□ 0.39
RAB5B-205ENST00000549034 BAZ1BQ9UIG0 1483 aaKnown RBP17.46■□□□□ 0.39
RAB5B-205ENST00000549034 HMGXB3Q12766 1538 aa17.42■□□□□ 0.38
RAB5B-205ENST00000549034 SUPT5HO00267 1087 aaKnown RBP17.31■□□□□ 0.36
RAB5B-205ENST00000549034 TOP2AP11388 1531 aaKnown RBP17.24■□□□□ 0.35
RAB5B-205ENST00000549034 NESP48681 1621 aa17.14■□□□□ 0.33
RAB5B-205ENST00000549034 CCDC88BA6NC98 1476 aa17.11■□□□□ 0.33
RAB5B-205ENST00000549034 CADPSQ9ULU8 1353 aa17.1■□□□□ 0.33
RAB5B-205ENST00000549034 LAMC3Q9Y6N6 1575 aa17.06■□□□□ 0.32
RAB5B-205ENST00000549034 ERCC6Q03468 1493 aa17.04■□□□□ 0.32
RAB5B-205ENST00000549034 PDS5BQ9NTI5 1447 aa17■□□□□ 0.31
RAB5B-205ENST00000549034 CFTRP13569 1480 aa16.98■□□□□ 0.31
RAB5B-205ENST00000549034 KIF21AQ7Z4S6 1674 aa16.91■□□□□ 0.3
RAB5B-205ENST00000549034 FANCD2Q9BXW9 1451 aa16.88■□□□□ 0.29
RAB5B-205ENST00000549034 CEP164Q9UPV0 1460 aa16.83■□□□□ 0.28
RAB5B-205ENST00000549034 PRDM2Q13029 1718 aa16.82■□□□□ 0.28
RAB5B-205ENST00000549034 MRC2Q9UBG0 1479 aa16.78■□□□□ 0.28
RAB5B-205ENST00000549034 THOC2Q8NI27 1593 aaKnown RBP16.76■□□□□ 0.27
RAB5B-205ENST00000549034 CUX2O14529 1486 aa16.75■□□□□ 0.27
RAB5B-205ENST00000549034 URB2Q14146 1524 aaKnown RBP16.69■□□□□ 0.26
RAB5B-205ENST00000549034 WDR62O43379 1518 aa16.68■□□□□ 0.26
RAB5B-205ENST00000549034 ABCC8Q09428 1581 aa16.64■□□□□ 0.25
RAB5B-205ENST00000549034 TOPBP1Q92547 1522 aa16.61■□□□□ 0.25
RAB5B-205ENST00000549034 DNMBPQ6XZF7 1577 aa16.58■□□□□ 0.24
RAB5B-205ENST00000549034 CUX1P39880 1505 aa16.52■□□□□ 0.24
RAB5B-205ENST00000549034 WRNQ14191 1432 aaPredicted RBP eCLIP16.49■□□□□ 0.23
RAB5B-205ENST00000549034 PLPPR3Q6T4P5 718 aa16.49■□□□□ 0.23
RAB5B-205ENST00000549034 IFT140Q96RY7 1462 aa16.48■□□□□ 0.23
RAB5B-205ENST00000549034 SOGA1O94964 1423 aa16.48■□□□□ 0.23
RAB5B-205ENST00000549034 POLA1P09884 1462 aaPredicted RBP16.47■□□□□ 0.23
RAB5B-205ENST00000549034 FGD5Q6ZNL6 1462 aa16.47■□□□□ 0.23
RAB5B-205ENST00000549034 RAD54L2Q9Y4B4 1467 aa16.46■□□□□ 0.23
RAB5B-205ENST00000549034 FOXD1Q16676 465 aa16.44■□□□□ 0.22
RAB5B-205ENST00000549034 ZNF608Q9ULD9 1512 aaPredicted RBP16.41■□□□□ 0.22
RAB5B-205ENST00000549034 SYNJ1O43426 1573 aa16.41■□□□□ 0.22
RAB5B-205ENST00000549034 TOP2BQ02880 1626 aa16.4■□□□□ 0.22
RAB5B-205ENST00000549034 TARBP1Q13395 1621 aaKnown RBP16.39■□□□□ 0.21
RAB5B-205ENST00000549034 TDRD9Q8NDG6 1382 aaKnown RBP16.38■□□□□ 0.21
RAB5B-205ENST00000549034 BIVM-ERCC5R4GMW8 1640 aa16.38■□□□□ 0.21
RAB5B-205ENST00000549034 AQRO60306 1485 aaKnown RBP eCLIP16.38■□□□□ 0.211e-9■■■■■ 51.2
RAB5B-205ENST00000549034 TRIM41Q8WV44 630 aa16.32■□□□□ 0.2
RAB5B-205ENST00000549034 EIF4G3O43432 1585 aaKnown RBP16.3■□□□□ 0.2
RAB5B-205ENST00000549034 ABCA10Q8WWZ4 1543 aa16.29■□□□□ 0.2
RAB5B-205ENST00000549034 FBLN2P98095 1184 aa16.27■□□□□ 0.2
RAB5B-205ENST00000549034 GAPVD1Q14C86 1478 aa16.25■□□□□ 0.19
RAB5B-205ENST00000549034 WDR97A6NE52 1622 aa16.24■□□□□ 0.19
RAB5B-205ENST00000549034 OSCARQ8IYS5 282 aa16.23■□□□□ 0.19
RAB5B-205ENST00000549034 DNAJC5Q9H3Z4 198 aa16.22■□□□□ 0.19
RAB5B-205ENST00000549034 GRIN2BQ13224 1484 aa16.22■□□□□ 0.19
RAB5B-205ENST00000549034 CHMP7Q8WUX9 453 aaPredicted RBP16.2■□□□□ 0.18
RAB5B-205ENST00000549034 ABCA5Q8WWZ7 1642 aa16.18■□□□□ 0.18
RAB5B-205ENST00000549034 SNAPC4Q5SXM2 1469 aa16.17■□□□□ 0.18
RAB5B-205ENST00000549034 PBRM1Q86U86 1689 aa16.17■□□□□ 0.18
RAB5B-205ENST00000549034 KIF27Q86VH2 1401 aa16.15■□□□□ 0.18
RAB5B-205ENST00000549034 MAGI1Q96QZ7 1491 aaPredicted RBP16.13■□□□□ 0.17
RAB5B-205ENST00000549034 CHD1O14646 1710 aa16.11■□□□□ 0.17
RAB5B-205ENST00000549034 IGF1RP08069 1367 aa16.1■□□□□ 0.17
RAB5B-205ENST00000549034 SYNJ2O15056 1496 aa16.09■□□□□ 0.17
RAB5B-205ENST00000549034 ERICH3Q5RHP9 1530 aa16.09■□□□□ 0.17
RAB5B-205ENST00000549034 RUSC2Q8N2Y8 1516 aa16.08■□□□□ 0.16
RAB5B-205ENST00000549034 FHAD1B1AJZ9 1412 aa16.06■□□□□ 0.16
RAB5B-205ENST00000549034 FAM9AQ8IZU1 332 aaPredicted RBP16.02■□□□□ 0.16
RAB5B-205ENST00000549034 CARMIL1Q5VZK9 1371 aa16.01■□□□□ 0.15
RAB5B-205ENST00000549034 ADAMTS12P58397 1594 aa16.01■□□□□ 0.15
RAB5B-205ENST00000549034 GRIN2AQ12879 1464 aa15.99■□□□□ 0.15
RAB5B-205ENST00000549034 CSRNP3Q8WYN3 585 aa15.98■□□□□ 0.15
RAB5B-205ENST00000549034 CUL7Q14999 1698 aa15.95■□□□□ 0.14
RAB5B-205ENST00000549034 NUP160Q12769 1436 aa15.9■□□□□ 0.14
RAB5B-205ENST00000549034 CEP170Q5SW79 1584 aa15.9■□□□□ 0.14
RAB5B-205ENST00000549034 RAPGEF2Q9Y4G8 1499 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms