RNA–Protein interactions for RNA: ENST00000548080.5

HDAC7-227, Transcript of histone deacetylase 7, humanhuman

TSL 5

Gene HDAC7, Length 1,479 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-227ENST00000548080 NISCHQ9Y2I1 1504 aa41.58■■■■■ 4.25
HDAC7-227ENST00000548080 CCDC180Q9P1Z9 1646 aa36.86■■■■□ 3.49
HDAC7-227ENST00000548080 ABCC9O60706 1549 aa36.05■■■■□ 3.36
HDAC7-227ENST00000548080 DCAF8L2P0C7V8 631 aa34.81■■■■□ 3.16
HDAC7-227ENST00000548080 ZCCHC6Q5VYS8 1495 aaKnown RBP34.68■■■■□ 3.14
HDAC7-227ENST00000548080 RB1CC1Q8TDY2 1594 aa34.62■■■■□ 3.13
HDAC7-227ENST00000548080 NACADO15069 1562 aa34.58■■■■□ 3.13
HDAC7-227ENST00000548080 MYO15BQ96JP2 1530 aa34.35■■■■□ 3.09
HDAC7-227ENST00000548080 DCAF1Q9Y4B6 1507 aa34.31■■■■□ 3.08
HDAC7-227ENST00000548080 UNC13AQ9UPW8 1703 aa33.96■■■■□ 3.03
HDAC7-227ENST00000548080 SCRIBQ14160 1630 aa33.8■■■■□ 3
HDAC7-227ENST00000548080 PABPN1Q86U42 306 aaKnown RBP eCLIP33.73■■■□□ 2.99
HDAC7-227ENST00000548080 BICRAQ9NZM4 1560 aa33.64■■■□□ 2.98
HDAC7-227ENST00000548080 SHROOM4Q9ULL8 1493 aa33.15■■■□□ 2.9
HDAC7-227ENST00000548080 DNAJC5BQ9UF47 199 aa32.93■■■□□ 2.86
HDAC7-227ENST00000548080 EIF4G1Q04637 1599 aaKnown RBP32.71■■■□□ 2.83
HDAC7-227ENST00000548080 CC2D2AQ9P2K1 1620 aa32.57■■■□□ 2.8
HDAC7-227ENST00000548080 CECR2Q9BXF3 1484 aa32.47■■■□□ 2.79
HDAC7-227ENST00000548080 SMARCA4P51532 1647 aa32.26■■■□□ 2.76
HDAC7-227ENST00000548080 BAZ1AQ9NRL2 1556 aaPredicted RBP32.2■■■□□ 2.74
HDAC7-227ENST00000548080 MROH2BQ7Z745 1585 aa32.13■■■□□ 2.73
HDAC7-227ENST00000548080 ATAD2BQ9ULI0 1458 aa32.02■■■□□ 2.72
HDAC7-227ENST00000548080 SMARCA2P51531 1590 aa31.94■■■□□ 2.7
HDAC7-227ENST00000548080 NCAPD3P42695 1498 aa31.91■■■□□ 2.7
HDAC7-227ENST00000548080 PEG3Q9GZU2 1588 aa31.85■■■□□ 2.69
HDAC7-227ENST00000548080 WIZO95785 1651 aa31.82■■■□□ 2.68
HDAC7-227ENST00000548080 HMGXB3Q12766 1538 aa31.79■■■□□ 2.68
HDAC7-227ENST00000548080 BAZ1BQ9UIG0 1483 aaKnown RBP31.78■■■□□ 2.68
HDAC7-227ENST00000548080 RSF1Q96T23 1441 aaPredicted RBP31.77■■■□□ 2.68
HDAC7-227ENST00000548080 TOP2AP11388 1531 aaKnown RBP31.41■■■□□ 2.62
HDAC7-227ENST00000548080 NESP48681 1621 aa31.27■■■□□ 2.6
HDAC7-227ENST00000548080 SUPT5HO00267 1087 aaKnown RBP31.22■■■□□ 2.59
HDAC7-227ENST00000548080 CCDC88BA6NC98 1476 aa31.07■■■□□ 2.56
HDAC7-227ENST00000548080 LAMC3Q9Y6N6 1575 aa31.06■■■□□ 2.56
HDAC7-227ENST00000548080 CADPSQ9ULU8 1353 aa31.02■■■□□ 2.56
HDAC7-227ENST00000548080 ERCC6Q03468 1493 aa31■■■□□ 2.55
HDAC7-227ENST00000548080 KIF21AQ7Z4S6 1674 aa30.89■■■□□ 2.54
HDAC7-227ENST00000548080 CFTRP13569 1480 aa30.87■■■□□ 2.53
HDAC7-227ENST00000548080 PDS5BQ9NTI5 1447 aa30.84■■■□□ 2.53
HDAC7-227ENST00000548080 FANCD2Q9BXW9 1451 aa30.72■■■□□ 2.51
HDAC7-227ENST00000548080 PRDM2Q13029 1718 aa30.71■■■□□ 2.51
HDAC7-227ENST00000548080 THOC2Q8NI27 1593 aaKnown RBP30.69■■■□□ 2.5
HDAC7-227ENST00000548080 CEP164Q9UPV0 1460 aa30.65■■■□□ 2.5
HDAC7-227ENST00000548080 MRC2Q9UBG0 1479 aa30.56■■■□□ 2.48
HDAC7-227ENST00000548080 CUX2O14529 1486 aa30.52■■■□□ 2.48
HDAC7-227ENST00000548080 WDR62O43379 1518 aa30.44■■■□□ 2.46
HDAC7-227ENST00000548080 URB2Q14146 1524 aaKnown RBP30.43■■■□□ 2.46
HDAC7-227ENST00000548080 TOPBP1Q92547 1522 aa30.25■■■□□ 2.43
HDAC7-227ENST00000548080 DNMBPQ6XZF7 1577 aa30.22■■■□□ 2.43
HDAC7-227ENST00000548080 ABCC8Q09428 1581 aa30.12■■■□□ 2.41
HDAC7-227ENST00000548080 CUX1P39880 1505 aa30.12■■■□□ 2.41
HDAC7-227ENST00000548080 POLA1P09884 1462 aaPredicted RBP30.01■■■□□ 2.39
HDAC7-227ENST00000548080 FGD5Q6ZNL6 1462 aa29.98■■■□□ 2.39
HDAC7-227ENST00000548080 IFT140Q96RY7 1462 aa29.96■■■□□ 2.39
HDAC7-227ENST00000548080 WRNQ14191 1432 aaPredicted RBP eCLIP29.95■■■□□ 2.38
HDAC7-227ENST00000548080 SYNJ1O43426 1573 aa29.94■■■□□ 2.38
HDAC7-227ENST00000548080 RAD54L2Q9Y4B4 1467 aa29.93■■■□□ 2.38
HDAC7-227ENST00000548080 ZNF608Q9ULD9 1512 aaPredicted RBP29.92■■■□□ 2.38
HDAC7-227ENST00000548080 TARBP1Q13395 1621 aaKnown RBP29.91■■■□□ 2.38
HDAC7-227ENST00000548080 SOGA1O94964 1423 aa29.87■■■□□ 2.37
HDAC7-227ENST00000548080 TOP2BQ02880 1626 aa29.86■■■□□ 2.37
HDAC7-227ENST00000548080 BIVM-ERCC5R4GMW8 1640 aa29.86■■■□□ 2.37
HDAC7-227ENST00000548080 EIF4G3O43432 1585 aaKnown RBP29.8■■■□□ 2.36
HDAC7-227ENST00000548080 AQRO60306 1485 aaKnown RBP eCLIP29.76■■■□□ 2.354e-7■■■■■ 30.7
HDAC7-227ENST00000548080 TDRD9Q8NDG6 1382 aaKnown RBP29.74■■■□□ 2.35
HDAC7-227ENST00000548080 WDR97A6NE52 1622 aa29.72■■■□□ 2.35
HDAC7-227ENST00000548080 ABCA10Q8WWZ4 1543 aa29.64■■■□□ 2.34
HDAC7-227ENST00000548080 ABCA5Q8WWZ7 1642 aa29.54■■■□□ 2.32
HDAC7-227ENST00000548080 GAPVD1Q14C86 1478 aa29.53■■■□□ 2.32
HDAC7-227ENST00000548080 PBRM1Q86U86 1689 aa29.52■■■□□ 2.32
HDAC7-227ENST00000548080 GRIN2BQ13224 1484 aa29.48■■■□□ 2.31
HDAC7-227ENST00000548080 SNAPC4Q5SXM2 1469 aa29.48■■■□□ 2.31
HDAC7-227ENST00000548080 CHD1O14646 1710 aa29.42■■■□□ 2.3
HDAC7-227ENST00000548080 FBLN2P98095 1184 aa29.41■■■□□ 2.3
HDAC7-227ENST00000548080 DNAJC5Q9H3Z4 198 aa29.41■■■□□ 2.3
HDAC7-227ENST00000548080 TRIM41Q8WV44 630 aa29.38■■■□□ 2.29
HDAC7-227ENST00000548080 MAGI1Q96QZ7 1491 aaPredicted RBP29.36■■■□□ 2.29
HDAC7-227ENST00000548080 OSCARQ8IYS5 282 aa29.3■■■□□ 2.28
HDAC7-227ENST00000548080 CHIC1Q5VXU3 224 aa29.29■■■□□ 2.28
HDAC7-227ENST00000548080 KIF27Q86VH2 1401 aa29.27■■■□□ 2.28
HDAC7-227ENST00000548080 ERICH3Q5RHP9 1530 aa29.27■■■□□ 2.28
HDAC7-227ENST00000548080 CHMP7Q8WUX9 453 aaPredicted RBP29.27■■■□□ 2.28
HDAC7-227ENST00000548080 SYNJ2O15056 1496 aa29.27■■■□□ 2.28
HDAC7-227ENST00000548080 ADAMTS12P58397 1594 aa29.26■■■□□ 2.28
HDAC7-227ENST00000548080 RUSC2Q8N2Y8 1516 aa29.2■■■□□ 2.27
HDAC7-227ENST00000548080 FHAD1B1AJZ9 1412 aa29.17■■■□□ 2.26
HDAC7-227ENST00000548080 IGF1RP08069 1367 aa29.15■■■□□ 2.26
HDAC7-227ENST00000548080 GRIN2AQ12879 1464 aa29.12■■■□□ 2.25
HDAC7-227ENST00000548080 CUL7Q14999 1698 aa29.06■■■□□ 2.24
HDAC7-227ENST00000548080 CLASP1Q7Z460 1538 aa29.02■■■□□ 2.24
HDAC7-227ENST00000548080 CEP170Q5SW79 1584 aa29.02■■■□□ 2.24
HDAC7-227ENST00000548080 CARMIL1Q5VZK9 1371 aa28.99■■■□□ 2.23
HDAC7-227ENST00000548080 NUP160Q12769 1436 aa28.95■■■□□ 2.22
HDAC7-227ENST00000548080 FAM9AQ8IZU1 332 aaPredicted RBP28.91■■■□□ 2.22
HDAC7-227ENST00000548080 RIMBP3CA6NJZ7 1639 aa28.91■■■□□ 2.22
HDAC7-227ENST00000548080 RIMBP3BA6NNM3 1639 aa28.91■■■□□ 2.22
HDAC7-227ENST00000548080 RIMBP3Q9UFD9 1639 aa28.91■■■□□ 2.22
HDAC7-227ENST00000548080 ARHGEF11O15085 1522 aa28.89■■■□□ 2.22
HDAC7-227ENST00000548080 RAPGEF2Q9Y4G8 1499 aa28.83■■■□□ 2.21
HDAC7-227ENST00000548080 CSRNP3Q8WYN3 585 aa28.78■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms