RNA–Protein interactions for RNA: ENST00000546296.5

LTBR-215, Transcript of lymphotoxin beta receptor, humanhuman

TSL 4

Gene LTBR, Length 783 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-215ENST00000546296 NISCHQ9Y2I1 1504 aa40.28■■■■■ 4.04
LTBR-215ENST00000546296 CCDC180Q9P1Z9 1646 aa35.65■■■■□ 3.3
LTBR-215ENST00000546296 ABCC9O60706 1549 aa34.87■■■■□ 3.17
LTBR-215ENST00000546296 DCAF8L2P0C7V8 631 aa33.83■■■■□ 3.01
LTBR-215ENST00000546296 ZCCHC6Q5VYS8 1495 aaKnown RBP33.56■■■□□ 2.96
LTBR-215ENST00000546296 RB1CC1Q8TDY2 1594 aa33.55■■■□□ 2.96
LTBR-215ENST00000546296 NACADO15069 1562 aa33.55■■■□□ 2.96
LTBR-215ENST00000546296 MYO15BQ96JP2 1530 aa33.36■■■□□ 2.93
LTBR-215ENST00000546296 DCAF1Q9Y4B6 1507 aa33.29■■■□□ 2.92
LTBR-215ENST00000546296 PABPN1Q86U42 306 aaKnown RBP eCLIP32.7■■■□□ 2.83
LTBR-215ENST00000546296 UNC13AQ9UPW8 1703 aa32.67■■■□□ 2.82
LTBR-215ENST00000546296 SCRIBQ14160 1630 aa32.64■■■□□ 2.82
LTBR-215ENST00000546296 BICRAQ9NZM4 1560 aa32.48■■■□□ 2.79
LTBR-215ENST00000546296 SHROOM4Q9ULL8 1493 aa32.16■■■□□ 2.74
LTBR-215ENST00000546296 DNAJC5BQ9UF47 199 aa31.87■■■□□ 2.69
LTBR-215ENST00000546296 EIF4G1Q04637 1599 aaKnown RBP31.64■■■□□ 2.66
LTBR-215ENST00000546296 CC2D2AQ9P2K1 1620 aa31.48■■■□□ 2.63
LTBR-215ENST00000546296 CECR2Q9BXF3 1484 aa31.39■■■□□ 2.62
LTBR-215ENST00000546296 BAZ1AQ9NRL2 1556 aaPredicted RBP31.21■■■□□ 2.59
LTBR-215ENST00000546296 SMARCA4P51532 1647 aa31.19■■■□□ 2.58
LTBR-215ENST00000546296 MROH2BQ7Z745 1585 aa31.05■■■□□ 2.56
LTBR-215ENST00000546296 ATAD2BQ9ULI0 1458 aa31.02■■■□□ 2.56
LTBR-215ENST00000546296 SMARCA2P51531 1590 aa30.98■■■□□ 2.55
LTBR-215ENST00000546296 NCAPD3P42695 1498 aa30.98■■■□□ 2.55
LTBR-215ENST00000546296 PEG3Q9GZU2 1588 aa30.84■■■□□ 2.53
LTBR-215ENST00000546296 BAZ1BQ9UIG0 1483 aaKnown RBP30.81■■■□□ 2.52
LTBR-215ENST00000546296 RSF1Q96T23 1441 aaPredicted RBP30.79■■■□□ 2.52
LTBR-215ENST00000546296 HMGXB3Q12766 1538 aa30.78■■■□□ 2.52
LTBR-215ENST00000546296 WIZO95785 1651 aa30.71■■■□□ 2.51
LTBR-215ENST00000546296 TOP2AP11388 1531 aaKnown RBP30.4■■■□□ 2.46
LTBR-215ENST00000546296 SUPT5HO00267 1087 aaKnown RBP30.3■■■□□ 2.44
LTBR-215ENST00000546296 NESP48681 1621 aa30.2■■■□□ 2.43
LTBR-215ENST00000546296 CADPSQ9ULU8 1353 aa30.14■■■□□ 2.41
LTBR-215ENST00000546296 LAMC3Q9Y6N6 1575 aa30.1■■■□□ 2.41
LTBR-215ENST00000546296 CCDC88BA6NC98 1476 aa30.09■■■□□ 2.41
LTBR-215ENST00000546296 ERCC6Q03468 1493 aa30.07■■■□□ 2.4
LTBR-215ENST00000546296 PDS5BQ9NTI5 1447 aa29.98■■■□□ 2.39
LTBR-215ENST00000546296 CFTRP13569 1480 aa29.93■■■□□ 2.38
LTBR-215ENST00000546296 FANCD2Q9BXW9 1451 aa29.77■■■□□ 2.36
LTBR-215ENST00000546296 KIF21AQ7Z4S6 1674 aa29.76■■■□□ 2.35
LTBR-215ENST00000546296 CEP164Q9UPV0 1460 aa29.71■■■□□ 2.35
LTBR-215ENST00000546296 MRC2Q9UBG0 1479 aa29.62■■■□□ 2.33
LTBR-215ENST00000546296 CUX2O14529 1486 aa29.61■■■□□ 2.33
LTBR-215ENST00000546296 THOC2Q8NI27 1593 aaKnown RBP29.61■■■□□ 2.33
LTBR-215ENST00000546296 PRDM2Q13029 1718 aa29.59■■■□□ 2.33
LTBR-215ENST00000546296 WDR62O43379 1518 aa29.46■■■□□ 2.31
LTBR-215ENST00000546296 URB2Q14146 1524 aaKnown RBP29.43■■■□□ 2.3
LTBR-215ENST00000546296 ABCC8Q09428 1581 aa29.32■■■□□ 2.28
LTBR-215ENST00000546296 TOPBP1Q92547 1522 aa29.29■■■□□ 2.28
LTBR-215ENST00000546296 DNMBPQ6XZF7 1577 aa29.25■■■□□ 2.27
LTBR-215ENST00000546296 CUX1P39880 1505 aa29.12■■■□□ 2.25
LTBR-215ENST00000546296 IFT140Q96RY7 1462 aa29.09■■■□□ 2.25
LTBR-215ENST00000546296 POLA1P09884 1462 aaPredicted RBP29.04■■■□□ 2.24
LTBR-215ENST00000546296 WRNQ14191 1432 aaPredicted RBP eCLIP29.04■■■□□ 2.24
LTBR-215ENST00000546296 FGD5Q6ZNL6 1462 aa29.02■■■□□ 2.24
LTBR-215ENST00000546296 SOGA1O94964 1423 aa29.01■■■□□ 2.23
LTBR-215ENST00000546296 RAD54L2Q9Y4B4 1467 aa28.96■■■□□ 2.23
LTBR-215ENST00000546296 ZNF608Q9ULD9 1512 aaPredicted RBP28.93■■■□□ 2.22
LTBR-215ENST00000546296 SYNJ1O43426 1573 aa28.9■■■□□ 2.22
LTBR-215ENST00000546296 TARBP1Q13395 1621 aaKnown RBP28.9■■■□□ 2.22
LTBR-215ENST00000546296 TOP2BQ02880 1626 aa28.89■■■□□ 2.22
LTBR-215ENST00000546296 BIVM-ERCC5R4GMW8 1640 aa28.85■■■□□ 2.21
LTBR-215ENST00000546296 TDRD9Q8NDG6 1382 aaKnown RBP28.83■■■□□ 2.21
LTBR-215ENST00000546296 AQRO60306 1485 aaKnown RBP eCLIP28.83■■■□□ 2.213e-7■■■■□ 25.1
LTBR-215ENST00000546296 EIF4G3O43432 1585 aaKnown RBP28.76■■■□□ 2.19
LTBR-215ENST00000546296 ABCA10Q8WWZ4 1543 aa28.72■■■□□ 2.19
LTBR-215ENST00000546296 WDR97A6NE52 1622 aa28.67■■■□□ 2.18
LTBR-215ENST00000546296 GAPVD1Q14C86 1478 aa28.64■■■□□ 2.17
LTBR-215ENST00000546296 GRIN2BQ13224 1484 aa28.6■■■□□ 2.17
LTBR-215ENST00000546296 TRIM41Q8WV44 630 aa28.6■■■□□ 2.17
LTBR-215ENST00000546296 DNAJC5Q9H3Z4 198 aa28.59■■■□□ 2.17
LTBR-215ENST00000546296 FBLN2P98095 1184 aa28.57■■■□□ 2.16
LTBR-215ENST00000546296 OSCARQ8IYS5 282 aa28.55■■■□□ 2.16
LTBR-215ENST00000546296 ABCA5Q8WWZ7 1642 aa28.54■■■□□ 2.16
LTBR-215ENST00000546296 SNAPC4Q5SXM2 1469 aa28.53■■■□□ 2.16
LTBR-215ENST00000546296 MAGI1Q96QZ7 1491 aaPredicted RBP28.48■■■□□ 2.15
LTBR-215ENST00000546296 CHMP7Q8WUX9 453 aaPredicted RBP28.48■■■□□ 2.15
LTBR-215ENST00000546296 PBRM1Q86U86 1689 aa28.46■■■□□ 2.15
LTBR-215ENST00000546296 KIF27Q86VH2 1401 aa28.45■■■□□ 2.15
LTBR-215ENST00000546296 SYNJ2O15056 1496 aa28.39■■■□□ 2.13
LTBR-215ENST00000546296 ERICH3Q5RHP9 1530 aa28.38■■■□□ 2.13
LTBR-215ENST00000546296 CHD1O14646 1710 aa28.35■■■□□ 2.13
LTBR-215ENST00000546296 FHAD1B1AJZ9 1412 aa28.32■■■□□ 2.12
LTBR-215ENST00000546296 CHIC1Q5VXU3 224 aa28.31■■■□□ 2.12
LTBR-215ENST00000546296 IGF1RP08069 1367 aa28.31■■■□□ 2.12
LTBR-215ENST00000546296 ADAMTS12P58397 1594 aa28.28■■■□□ 2.12
LTBR-215ENST00000546296 RUSC2Q8N2Y8 1516 aa28.22■■■□□ 2.11
LTBR-215ENST00000546296 GRIN2AQ12879 1464 aa28.21■■■□□ 2.11
LTBR-215ENST00000546296 CARMIL1Q5VZK9 1371 aa28.16■■■□□ 2.1
LTBR-215ENST00000546296 CUL7Q14999 1698 aa28.13■■■□□ 2.09
LTBR-215ENST00000546296 NUP160Q12769 1436 aa28.07■■■□□ 2.08
LTBR-215ENST00000546296 CLASP1Q7Z460 1538 aa28.07■■■□□ 2.08
LTBR-215ENST00000546296 CEP170Q5SW79 1584 aa28.03■■■□□ 2.08
LTBR-215ENST00000546296 FAM9AQ8IZU1 332 aaPredicted RBP28.03■■■□□ 2.08
LTBR-215ENST00000546296 CSRNP3Q8WYN3 585 aa28.02■■■□□ 2.08
LTBR-215ENST00000546296 EEA1Q15075 1411 aa28■■■□□ 2.07
LTBR-215ENST00000546296 RAPGEF2Q9Y4G8 1499 aa27.98■■■□□ 2.07
LTBR-215ENST00000546296 ARHGEF11O15085 1522 aa27.96■■■□□ 2.07
LTBR-215ENST00000546296 RIMBP3CA6NJZ7 1639 aa27.92■■■□□ 2.06
LTBR-215ENST00000546296 RIMBP3BA6NNM3 1639 aa27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms