RNA–Protein interactions for RNA: ENST00000545901.5

HMBS-223, Transcript of hydroxymethylbilane synthase, human

TSL 1 (best)

Gene HMBS, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMBS-223	ENST00000545901	NISCH	Q9Y2I1	1504 aa		41.44	■■■■■ 4.23
HMBS-223	ENST00000545901	CCDC180	Q9P1Z9	1646 aa		36.59	■■■■□ 3.45
HMBS-223	ENST00000545901	ABCC9	O60706	1549 aa		35.82	■■■■□ 3.32
HMBS-223	ENST00000545901	ZCCHC6	Q5VYS8	1495 aa	Known RBP	34.65	■■■■□ 3.14
HMBS-223	ENST00000545901	DCAF1	Q9Y4B6	1507 aa		34.4	■■■■□ 3.1
HMBS-223	ENST00000545901	MYO15B	Q96JP2	1530 aa		34.39	■■■■□ 3.1
HMBS-223	ENST00000545901	NACAD	O15069	1562 aa		34.33	■■■■□ 3.09
HMBS-223	ENST00000545901	DCAF8L2	P0C7V8	631 aa		34.27	■■■■□ 3.08
HMBS-223	ENST00000545901	DNAJC5B	Q9UF47	199 aa		34.27	■■■■□ 3.08
HMBS-223	ENST00000545901	RB1CC1	Q8TDY2	1594 aa		34.2	■■■■□ 3.07
HMBS-223	ENST00000545901	SCRIB	Q14160	1630 aa		33.33	■■■□□ 2.93
HMBS-223	ENST00000545901	UNC13A	Q9UPW8	1703 aa		33.26	■■■□□ 2.92
HMBS-223	ENST00000545901	PABPN1	Q86U42	306 aa	Known RBP eCLIP	33.14	■■■□□ 2.9
HMBS-223	ENST00000545901	BICRA	Q9NZM4	1560 aa		33.13	■■■□□ 2.89
HMBS-223	ENST00000545901	SHROOM4	Q9ULL8	1493 aa		32.98	■■■□□ 2.87
HMBS-223	ENST00000545901	CECR2	Q9BXF3	1484 aa		32.32	■■■□□ 2.76
HMBS-223	ENST00000545901	CC2D2A	Q9P2K1	1620 aa		32.31	■■■□□ 2.76
HMBS-223	ENST00000545901	EIF4G1	Q04637	1599 aa	Known RBP	32.22	■■■□□ 2.75
HMBS-223	ENST00000545901	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	32.08	■■■□□ 2.73
HMBS-223	ENST00000545901	DNAJC5	Q9H3Z4	198 aa		32.03	■■■□□ 2.72
HMBS-223	ENST00000545901	SMARCA4	P51532	1647 aa		32	■■■□□ 2.71
HMBS-223	ENST00000545901	MROH2B	Q7Z745	1585 aa		31.9	■■■□□ 2.7
HMBS-223	ENST00000545901	RSF1	Q96T23	1441 aa	Predicted RBP	31.77	■■■□□ 2.68
HMBS-223	ENST00000545901	PEG3	Q9GZU2	1588 aa		31.77	■■■□□ 2.68
HMBS-223	ENST00000545901	ATAD2B	Q9ULI0	1458 aa		31.75	■■■□□ 2.67
HMBS-223	ENST00000545901	SMARCA2	P51531	1590 aa		31.75	■■■□□ 2.67
HMBS-223	ENST00000545901	NCAPD3	P42695	1498 aa		31.71	■■■□□ 2.67
HMBS-223	ENST00000545901	HMGXB3	Q12766	1538 aa		31.57	■■■□□ 2.64
HMBS-223	ENST00000545901	WIZ	O95785	1651 aa		31.51	■■■□□ 2.63
HMBS-223	ENST00000545901	BAZ1B	Q9UIG0	1483 aa	Known RBP	31.49	■■■□□ 2.63
HMBS-223	ENST00000545901	TOP2A	P11388	1531 aa	Known RBP	31.31	■■■□□ 2.6
HMBS-223	ENST00000545901	SUPT5H	O00267	1087 aa	Known RBP	31.23	■■■□□ 2.59
HMBS-223	ENST00000545901	CUX2	O14529	1486 aa		31.16	■■■□□ 2.58
HMBS-223	ENST00000545901	ERCC6	Q03468	1493 aa		30.97	■■■□□ 2.55
HMBS-223	ENST00000545901	CCDC88B	A6NC98	1476 aa		30.93	■■■□□ 2.54
HMBS-223	ENST00000545901	CADPS	Q9ULU8	1353 aa		30.79	■■■□□ 2.52
HMBS-223	ENST00000545901	LAMC3	Q9Y6N6	1575 aa		30.73	■■■□□ 2.51
HMBS-223	ENST00000545901	CFTR	P13569	1480 aa		30.71	■■■□□ 2.51
HMBS-223	ENST00000545901	NES	P48681	1621 aa		30.65	■■■□□ 2.5
HMBS-223	ENST00000545901	PDS5B	Q9NTI5	1447 aa		30.54	■■■□□ 2.48
HMBS-223	ENST00000545901	THOC2	Q8NI27	1593 aa	Known RBP	30.45	■■■□□ 2.46
HMBS-223	ENST00000545901	TRIM41	Q8WV44	630 aa		30.4	■■■□□ 2.46
HMBS-223	ENST00000545901	FANCD2	Q9BXW9	1451 aa		30.38	■■■□□ 2.45
HMBS-223	ENST00000545901	PRDM2	Q13029	1718 aa		30.36	■■■□□ 2.45
HMBS-223	ENST00000545901	CEP164	Q9UPV0	1460 aa		30.3	■■■□□ 2.44
HMBS-223	ENST00000545901	KIF21A	Q7Z4S6	1674 aa		30.24	■■■□□ 2.43
HMBS-223	ENST00000545901	MRC2	Q9UBG0	1479 aa		30.16	■■■□□ 2.42
HMBS-223	ENST00000545901	WDR62	O43379	1518 aa		30.06	■■■□□ 2.4
HMBS-223	ENST00000545901	ABCC8	Q09428	1581 aa		30.05	■■■□□ 2.4
HMBS-223	ENST00000545901	URB2	Q14146	1524 aa	Known RBP	30.03	■■■□□ 2.4
HMBS-223	ENST00000545901	DNMBP	Q6XZF7	1577 aa		29.97	■■■□□ 2.39
HMBS-223	ENST00000545901	TOPBP1	Q92547	1522 aa		29.96	■■■□□ 2.39
HMBS-223	ENST00000545901	WRN	Q14191	1432 aa	Predicted RBP eCLIP	29.94	■■■□□ 2.38
HMBS-223	ENST00000545901	CUX1	P39880	1505 aa		29.91	■■■□□ 2.38
HMBS-223	ENST00000545901	TOP2B	Q02880	1626 aa		29.79	■■■□□ 2.36
HMBS-223	ENST00000545901	SYNJ1	O43426	1573 aa		29.77	■■■□□ 2.36
HMBS-223	ENST00000545901	BIVM-ERCC5	R4GMW8	1640 aa		29.76	■■■□□ 2.35
HMBS-223	ENST00000545901	POLA1	P09884	1462 aa	Predicted RBP	29.74	■■■□□ 2.35
HMBS-223	ENST00000545901	FGD5	Q6ZNL6	1462 aa		29.72	■■■□□ 2.35
HMBS-223	ENST00000545901	IFT140	Q96RY7	1462 aa		29.68	■■■□□ 2.34
HMBS-223	ENST00000545901	SOGA1	O94964	1423 aa		29.62	■■■□□ 2.33
HMBS-223	ENST00000545901	TARBP1	Q13395	1621 aa	Known RBP	29.56	■■■□□ 2.32
HMBS-223	ENST00000545901	RAD54L2	Q9Y4B4	1467 aa		29.56	■■■□□ 2.32
HMBS-223	ENST00000545901	CHIC1	Q5VXU3	224 aa		29.52	■■■□□ 2.32
HMBS-223	ENST00000545901	ABCA10	Q8WWZ4	1543 aa		29.51	■■■□□ 2.32
HMBS-223	ENST00000545901	OSCAR	Q8IYS5	282 aa		29.47	■■■□□ 2.31
HMBS-223	ENST00000545901	WDR97	A6NE52	1622 aa		29.45	■■■□□ 2.31
HMBS-223	ENST00000545901	ZNF608	Q9ULD9	1512 aa	Predicted RBP	29.42	■■■□□ 2.3
HMBS-223	ENST00000545901	RIMBP3C	A6NJZ7	1639 aa		29.4	■■■□□ 2.3
HMBS-223	ENST00000545901	RIMBP3B	A6NNM3	1639 aa		29.4	■■■□□ 2.3
HMBS-223	ENST00000545901	RIMBP3	Q9UFD9	1639 aa		29.4	■■■□□ 2.3
HMBS-223	ENST00000545901	TDRD9	Q8NDG6	1382 aa	Known RBP	29.37	■■■□□ 2.29
HMBS-223	ENST00000545901	AQR	O60306	1485 aa	Known RBP eCLIP	29.33	■■■□□ 2.29	4e-8	■■■■■ 48.3
HMBS-223	ENST00000545901	EIF4G3	O43432	1585 aa	Known RBP	29.32	■■■□□ 2.28
HMBS-223	ENST00000545901	ABCA5	Q8WWZ7	1642 aa		29.3	■■■□□ 2.28
HMBS-223	ENST00000545901	GAPVD1	Q14C86	1478 aa		29.29	■■■□□ 2.28
HMBS-223	ENST00000545901	KIF27	Q86VH2	1401 aa		29.28	■■■□□ 2.28
HMBS-223	ENST00000545901	GRIN2B	Q13224	1484 aa		29.24	■■■□□ 2.27
HMBS-223	ENST00000545901	ARHGEF11	O15085	1522 aa		29.19	■■■□□ 2.26
HMBS-223	ENST00000545901	ERICH3	Q5RHP9	1530 aa		29.17	■■■□□ 2.26
HMBS-223	ENST00000545901	MAGI1	Q96QZ7	1491 aa	Predicted RBP	29.13	■■■□□ 2.25
HMBS-223	ENST00000545901	EEA1	Q15075	1411 aa		29.11	■■■□□ 2.25
HMBS-223	ENST00000545901	IGF1R	P08069	1367 aa		29.11	■■■□□ 2.25
HMBS-223	ENST00000545901	SNAPC4	Q5SXM2	1469 aa		29.09	■■■□□ 2.25
HMBS-223	ENST00000545901	PBRM1	Q86U86	1689 aa		29.09	■■■□□ 2.25
HMBS-223	ENST00000545901	RUSC2	Q8N2Y8	1516 aa		29.07	■■■□□ 2.24
HMBS-223	ENST00000545901	FHAD1	B1AJZ9	1412 aa		29.01	■■■□□ 2.23
HMBS-223	ENST00000545901	SYNJ2	O15056	1496 aa		28.99	■■■□□ 2.23
HMBS-223	ENST00000545901	ADAMTS12	P58397	1594 aa		28.97	■■■□□ 2.23
HMBS-223	ENST00000545901	CUL7	Q14999	1698 aa		28.95	■■■□□ 2.22
HMBS-223	ENST00000545901	CARMIL1	Q5VZK9	1371 aa		28.93	■■■□□ 2.22
HMBS-223	ENST00000545901	CSRNP3	Q8WYN3	585 aa		28.93	■■■□□ 2.22
HMBS-223	ENST00000545901	CYB5RL	Q6IPT4	315 aa		28.91	■■■□□ 2.22
HMBS-223	ENST00000545901	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.91	■■■□□ 2.22
HMBS-223	ENST00000545901	TRH	P20396	242 aa	Predicted RBP	28.9	■■■□□ 2.22
HMBS-223	ENST00000545901	PRX	Q9BXM0	1461 aa		28.87	■■■□□ 2.21
HMBS-223	ENST00000545901	GRIN2A	Q12879	1464 aa		28.85	■■■□□ 2.21
HMBS-223	ENST00000545901	ARAP1	Q96P48	1450 aa		28.85	■■■□□ 2.21
HMBS-223	ENST00000545901	FBLN2	P98095	1184 aa		28.83	■■■□□ 2.21
HMBS-223	ENST00000545901	RAPGEF2	Q9Y4G8	1499 aa		28.82	■■■□□ 2.2

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms