RNA–Protein interactions for RNA: ENST00000545445.1

LTBR-214, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 379 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-214ENST00000545445 NISCHQ9Y2I1 1504 aa28.6■■■□□ 2.17
LTBR-214ENST00000545445 ABCC9O60706 1549 aa26.38■■□□□ 1.81
LTBR-214ENST00000545445 CCDC180Q9P1Z9 1646 aa25.83■■□□□ 1.73
LTBR-214ENST00000545445 DNAJC5BQ9UF47 199 aa25.14■■□□□ 1.62
LTBR-214ENST00000545445 RB1CC1Q8TDY2 1594 aa24.84■■□□□ 1.57
LTBR-214ENST00000545445 NACADO15069 1562 aa24.54■■□□□ 1.52
LTBR-214ENST00000545445 PABPN1Q86U42 306 aaKnown RBP eCLIP24.49■■□□□ 1.51
LTBR-214ENST00000545445 DCAF8L2P0C7V8 631 aa24.36■■□□□ 1.49
LTBR-214ENST00000545445 UNC13AQ9UPW8 1703 aa24.24■■□□□ 1.47
LTBR-214ENST00000545445 BICRAQ9NZM4 1560 aa24.16■■□□□ 1.46
LTBR-214ENST00000545445 MYO15BQ96JP2 1530 aa24.02■■□□□ 1.44
LTBR-214ENST00000545445 CECR2Q9BXF3 1484 aa23.79■■□□□ 1.4
LTBR-214ENST00000545445 CC2D2AQ9P2K1 1620 aa23.76■■□□□ 1.39
LTBR-214ENST00000545445 SHROOM4Q9ULL8 1493 aa23.74■■□□□ 1.39
LTBR-214ENST00000545445 ZCCHC6Q5VYS8 1495 aaKnown RBP23.62■■□□□ 1.37
LTBR-214ENST00000545445 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
LTBR-214ENST00000545445 SCRIBQ14160 1630 aa23.59■■□□□ 1.37
LTBR-214ENST00000545445 DCAF1Q9Y4B6 1507 aa23.56■■□□□ 1.36
LTBR-214ENST00000545445 DNAJC5Q9H3Z4 198 aa23.38■■□□□ 1.33
LTBR-214ENST00000545445 CUX2O14529 1486 aa22.87■■□□□ 1.25
LTBR-214ENST00000545445 ERCC6Q03468 1493 aa22.79■■□□□ 1.24
LTBR-214ENST00000545445 NCAPD3P42695 1498 aa22.67■■□□□ 1.22
LTBR-214ENST00000545445 ATAD2BQ9ULI0 1458 aa22.57■■□□□ 1.2
LTBR-214ENST00000545445 NESP48681 1621 aa22.53■■□□□ 1.2
LTBR-214ENST00000545445 HMGXB3Q12766 1538 aa22.47■■□□□ 1.19
LTBR-214ENST00000545445 SMARCA2P51531 1590 aa22.45■■□□□ 1.18
LTBR-214ENST00000545445 SMARCA4P51532 1647 aa22.42■■□□□ 1.18
LTBR-214ENST00000545445 THOC2Q8NI27 1593 aaKnown RBP22.37■■□□□ 1.17
LTBR-214ENST00000545445 BAZ1BQ9UIG0 1483 aaKnown RBP22.33■■□□□ 1.16
LTBR-214ENST00000545445 TRIM41Q8WV44 630 aa22.24■■□□□ 1.15
LTBR-214ENST00000545445 BAZ1AQ9NRL2 1556 aaPredicted RBP22.22■■□□□ 1.15
LTBR-214ENST00000545445 LAMC3Q9Y6N6 1575 aa22.22■■□□□ 1.15
LTBR-214ENST00000545445 KIF21AQ7Z4S6 1674 aa22.17■■□□□ 1.14
LTBR-214ENST00000545445 PEG3Q9GZU2 1588 aa22.17■■□□□ 1.14
LTBR-214ENST00000545445 PDS5BQ9NTI5 1447 aa22.13■■□□□ 1.13
LTBR-214ENST00000545445 MROH2BQ7Z745 1585 aa22.06■■□□□ 1.12
LTBR-214ENST00000545445 MRC2Q9UBG0 1479 aa22■■□□□ 1.11
LTBR-214ENST00000545445 CADPSQ9ULU8 1353 aa21.97■■□□□ 1.11
LTBR-214ENST00000545445 WDR62O43379 1518 aa21.95■■□□□ 1.1
LTBR-214ENST00000545445 CEP164Q9UPV0 1460 aa21.82■■□□□ 1.08
LTBR-214ENST00000545445 FANCD2Q9BXW9 1451 aa21.75■■□□□ 1.07
LTBR-214ENST00000545445 WIZO95785 1651 aa21.75■■□□□ 1.07
LTBR-214ENST00000545445 OSCARQ8IYS5 282 aa21.72■■□□□ 1.07
LTBR-214ENST00000545445 CFTRP13569 1480 aa21.63■■□□□ 1.05
LTBR-214ENST00000545445 URB2Q14146 1524 aaKnown RBP21.61■■□□□ 1.05
LTBR-214ENST00000545445 RIMBP3CA6NJZ7 1639 aa21.54■■□□□ 1.04
LTBR-214ENST00000545445 RIMBP3BA6NNM3 1639 aa21.54■■□□□ 1.04
LTBR-214ENST00000545445 RIMBP3Q9UFD9 1639 aa21.54■■□□□ 1.04
LTBR-214ENST00000545445 TOP2AP11388 1531 aaKnown RBP21.45■■□□□ 1.02
LTBR-214ENST00000545445 ARHGEF11O15085 1522 aa21.44■■□□□ 1.02
LTBR-214ENST00000545445 ZNF608Q9ULD9 1512 aaPredicted RBP21.44■■□□□ 1.02
LTBR-214ENST00000545445 RSF1Q96T23 1441 aaPredicted RBP21.43■■□□□ 1.02
LTBR-214ENST00000545445 IFT140Q96RY7 1462 aa21.39■■□□□ 1.01
LTBR-214ENST00000545445 PRDM2Q13029 1718 aa21.29■■□□□ 1
LTBR-214ENST00000545445 CYB5RLQ6IPT4 315 aa21.29■■□□□ 1
LTBR-214ENST00000545445 TOPBP1Q92547 1522 aa21.28■■□□□ 1
LTBR-214ENST00000545445 EIF4G3O43432 1585 aaKnown RBP21.27■■□□□ 1
LTBR-214ENST00000545445 CCDC88BA6NC98 1476 aa21.21■□□□□ 0.99
LTBR-214ENST00000545445 ARAP1Q96P48 1450 aa21.21■□□□□ 0.99
LTBR-214ENST00000545445 TRHP20396 242 aaPredicted RBP21.21■□□□□ 0.99
LTBR-214ENST00000545445 CHD1O14646 1710 aa21.17■□□□□ 0.98
LTBR-214ENST00000545445 AQRO60306 1485 aaKnown RBP eCLIP21.16■□□□□ 0.989e-10■■■■□ 25.7
LTBR-214ENST00000545445 DNMBPQ6XZF7 1577 aa21.15■□□□□ 0.98
LTBR-214ENST00000545445 ABCC8Q09428 1581 aa21.14■□□□□ 0.97
LTBR-214ENST00000545445 SUPT5HO00267 1087 aaKnown RBP21.12■□□□□ 0.97
LTBR-214ENST00000545445 TARBP1Q13395 1621 aaKnown RBP21.11■□□□□ 0.97
LTBR-214ENST00000545445 FBLN2P98095 1184 aa21.11■□□□□ 0.97
LTBR-214ENST00000545445 POLA1P09884 1462 aaPredicted RBP21.04■□□□□ 0.96
LTBR-214ENST00000545445 RAD54L2Q9Y4B4 1467 aa20.99■□□□□ 0.95
LTBR-214ENST00000545445 TDRD9Q8NDG6 1382 aaKnown RBP20.97■□□□□ 0.95
LTBR-214ENST00000545445 SNAPC4Q5SXM2 1469 aa20.95■□□□□ 0.94
LTBR-214ENST00000545445 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
LTBR-214ENST00000545445 AEBP2Q6ZN18 517 aaPredicted RBP20.92■□□□□ 0.94
LTBR-214ENST00000545445 SOGA1O94964 1423 aa20.91■□□□□ 0.94
LTBR-214ENST00000545445 SYNJ1O43426 1573 aa20.86■□□□□ 0.93
LTBR-214ENST00000545445 CHMP7Q8WUX9 453 aaPredicted RBP20.85■□□□□ 0.93
LTBR-214ENST00000545445 FGD5Q6ZNL6 1462 aa20.85■□□□□ 0.93
LTBR-214ENST00000545445 MAGI1Q96QZ7 1491 aaPredicted RBP20.83■□□□□ 0.93
LTBR-214ENST00000545445 WDR97A6NE52 1622 aa20.82■□□□□ 0.92
LTBR-214ENST00000545445 GRIN2BQ13224 1484 aa20.79■□□□□ 0.92
LTBR-214ENST00000545445 SYNJ2O15056 1496 aa20.78■□□□□ 0.92
LTBR-214ENST00000545445 CUX1P39880 1505 aa20.76■□□□□ 0.91
LTBR-214ENST00000545445 GAPVD1Q14C86 1478 aa20.75■□□□□ 0.91
LTBR-214ENST00000545445 PBRM1Q86U86 1689 aa20.66■□□□□ 0.9
LTBR-214ENST00000545445 ERCC6L2Q5T890 1561 aa20.62■□□□□ 0.89
LTBR-214ENST00000545445 ABCA5Q8WWZ7 1642 aa20.58■□□□□ 0.89
LTBR-214ENST00000545445 ABCA10Q8WWZ4 1543 aa20.56■□□□□ 0.88
LTBR-214ENST00000545445 GRIN2AQ12879 1464 aa20.54■□□□□ 0.88
LTBR-214ENST00000545445 CEP170Q5SW79 1584 aa20.51■□□□□ 0.87
LTBR-214ENST00000545445 ADAMTS12P58397 1594 aa20.48■□□□□ 0.87
LTBR-214ENST00000545445 NUP160Q12769 1436 aa20.48■□□□□ 0.87
LTBR-214ENST00000545445 SHROOM2Q13796 1616 aa20.42■□□□□ 0.86
LTBR-214ENST00000545445 WRNQ14191 1432 aaPredicted RBP eCLIP20.38■□□□□ 0.85
LTBR-214ENST00000545445 KIF13AQ9H1H9 1805 aa20.38■□□□□ 0.85
LTBR-214ENST00000545445 FHAD1B1AJZ9 1412 aa20.37■□□□□ 0.85
LTBR-214ENST00000545445 PRG4Q92954 1404 aaPredicted RBP20.33■□□□□ 0.84
LTBR-214ENST00000545445 ERICH3Q5RHP9 1530 aa20.27■□□□□ 0.84
LTBR-214ENST00000545445 FAM69CQ0P6D2 419 aa20.27■□□□□ 0.84
LTBR-214ENST00000545445 ABCC10Q5T3U5 1492 aa20.26■□□□□ 0.83
LTBR-214ENST00000545445 TOP2BQ02880 1626 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 112.9 ms