RNA–Protein interactions for RNA: ENST00000544588.1

CIT-214, Transcript of citron rho-interacting serine/threonine kinase, humanhuman

TSL 4

Gene CIT, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIT-214ENST00000544588 NISCHQ9Y2I1 1504 aa32.01■■■□□ 2.72
CIT-214ENST00000544588 ABCC9O60706 1549 aa28.37■■■□□ 2.13
CIT-214ENST00000544588 CCDC180Q9P1Z9 1646 aa28.36■■■□□ 2.13
CIT-214ENST00000544588 DCAF8L2P0C7V8 631 aa27.28■■□□□ 1.96
CIT-214ENST00000544588 RB1CC1Q8TDY2 1594 aa27■■□□□ 1.91
CIT-214ENST00000544588 NACADO15069 1562 aa26.89■■□□□ 1.9
CIT-214ENST00000544588 PABPN1Q86U42 306 aaKnown RBP eCLIP26.62■■□□□ 1.85
CIT-214ENST00000544588 MYO15BQ96JP2 1530 aa26.58■■□□□ 1.85
CIT-214ENST00000544588 ZCCHC6Q5VYS8 1495 aaKnown RBP26.56■■□□□ 1.84
CIT-214ENST00000544588 DNAJC5BQ9UF47 199 aa26.44■■□□□ 1.82
CIT-214ENST00000544588 DCAF1Q9Y4B6 1507 aa26.37■■□□□ 1.81
CIT-214ENST00000544588 BICRAQ9NZM4 1560 aa26.13■■□□□ 1.77
CIT-214ENST00000544588 UNC13AQ9UPW8 1703 aa26.12■■□□□ 1.77
CIT-214ENST00000544588 SCRIBQ14160 1630 aa26.06■■□□□ 1.76
CIT-214ENST00000544588 SHROOM4Q9ULL8 1493 aa25.82■■□□□ 1.72
CIT-214ENST00000544588 EIF4G1Q04637 1599 aaKnown RBP25.53■■□□□ 1.68
CIT-214ENST00000544588 CECR2Q9BXF3 1484 aa25.5■■□□□ 1.67
CIT-214ENST00000544588 CC2D2AQ9P2K1 1620 aa25.49■■□□□ 1.67
CIT-214ENST00000544588 NCAPD3P42695 1498 aa24.89■■□□□ 1.58
CIT-214ENST00000544588 ATAD2BQ9ULI0 1458 aa24.89■■□□□ 1.57
CIT-214ENST00000544588 SMARCA4P51532 1647 aa24.82■■□□□ 1.56
CIT-214ENST00000544588 BAZ1AQ9NRL2 1556 aaPredicted RBP24.8■■□□□ 1.56
CIT-214ENST00000544588 SMARCA2P51531 1590 aa24.77■■□□□ 1.56
CIT-214ENST00000544588 DNAJC5Q9H3Z4 198 aa24.75■■□□□ 1.55
CIT-214ENST00000544588 MROH2BQ7Z745 1585 aa24.69■■□□□ 1.54
CIT-214ENST00000544588 BAZ1BQ9UIG0 1483 aaKnown RBP24.67■■□□□ 1.54
CIT-214ENST00000544588 HMGXB3Q12766 1538 aa24.63■■□□□ 1.53
CIT-214ENST00000544588 PEG3Q9GZU2 1588 aa24.53■■□□□ 1.52
CIT-214ENST00000544588 ERCC6Q03468 1493 aa24.51■■□□□ 1.51
CIT-214ENST00000544588 NESP48681 1621 aa24.42■■□□□ 1.5
CIT-214ENST00000544588 RSF1Q96T23 1441 aaPredicted RBP24.36■■□□□ 1.49
CIT-214ENST00000544588 WIZO95785 1651 aa24.34■■□□□ 1.49
CIT-214ENST00000544588 CADPSQ9ULU8 1353 aa24.24■■□□□ 1.47
CIT-214ENST00000544588 CUX2O14529 1486 aa24.21■■□□□ 1.47
CIT-214ENST00000544588 PDS5BQ9NTI5 1447 aa24.21■■□□□ 1.47
CIT-214ENST00000544588 LAMC3Q9Y6N6 1575 aa24.19■■□□□ 1.46
CIT-214ENST00000544588 TOP2AP11388 1531 aaKnown RBP24.08■■□□□ 1.45
CIT-214ENST00000544588 CFTRP13569 1480 aa23.95■■□□□ 1.42
CIT-214ENST00000544588 THOC2Q8NI27 1593 aaKnown RBP23.92■■□□□ 1.42
CIT-214ENST00000544588 FANCD2Q9BXW9 1451 aa23.92■■□□□ 1.42
CIT-214ENST00000544588 MRC2Q9UBG0 1479 aa23.91■■□□□ 1.42
CIT-214ENST00000544588 KIF21AQ7Z4S6 1674 aa23.91■■□□□ 1.42
CIT-214ENST00000544588 CCDC88BA6NC98 1476 aa23.9■■□□□ 1.42
CIT-214ENST00000544588 CEP164Q9UPV0 1460 aa23.89■■□□□ 1.42
CIT-214ENST00000544588 SUPT5HO00267 1087 aaKnown RBP23.8■■□□□ 1.4
CIT-214ENST00000544588 WDR62O43379 1518 aa23.75■■□□□ 1.39
CIT-214ENST00000544588 URB2Q14146 1524 aaKnown RBP23.65■■□□□ 1.38
CIT-214ENST00000544588 TOPBP1Q92547 1522 aa23.46■■□□□ 1.35
CIT-214ENST00000544588 ABCC8Q09428 1581 aa23.44■■□□□ 1.34
CIT-214ENST00000544588 IFT140Q96RY7 1462 aa23.42■■□□□ 1.34
CIT-214ENST00000544588 PRDM2Q13029 1718 aa23.39■■□□□ 1.33
CIT-214ENST00000544588 OSCARQ8IYS5 282 aa23.37■■□□□ 1.33
CIT-214ENST00000544588 ZNF608Q9ULD9 1512 aaPredicted RBP23.35■■□□□ 1.33
CIT-214ENST00000544588 DNMBPQ6XZF7 1577 aa23.35■■□□□ 1.33
CIT-214ENST00000544588 TRIM41Q8WV44 630 aa23.31■■□□□ 1.32
CIT-214ENST00000544588 SOGA1O94964 1423 aa23.26■■□□□ 1.31
CIT-214ENST00000544588 POLA1P09884 1462 aaPredicted RBP23.25■■□□□ 1.31
CIT-214ENST00000544588 AQRO60306 1485 aaKnown RBP eCLIP23.24■■□□□ 1.31
CIT-214ENST00000544588 RAD54L2Q9Y4B4 1467 aa23.24■■□□□ 1.31
CIT-214ENST00000544588 FBLN2P98095 1184 aa23.21■■□□□ 1.31
CIT-214ENST00000544588 TDRD9Q8NDG6 1382 aaKnown RBP23.21■■□□□ 1.31
CIT-214ENST00000544588 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
CIT-214ENST00000544588 CUX1P39880 1505 aa23.16■■□□□ 1.3
CIT-214ENST00000544588 TARBP1Q13395 1621 aaKnown RBP23.11■■□□□ 1.29
CIT-214ENST00000544588 EIF4G3O43432 1585 aaKnown RBP23.1■■□□□ 1.29
CIT-214ENST00000544588 CHMP7Q8WUX9 453 aaPredicted RBP23.04■■□□□ 1.28
CIT-214ENST00000544588 WRNQ14191 1432 aaPredicted RBP eCLIP23■■□□□ 1.27
CIT-214ENST00000544588 SNAPC4Q5SXM2 1469 aa22.96■■□□□ 1.27
CIT-214ENST00000544588 GRIN2BQ13224 1484 aa22.95■■□□□ 1.26
CIT-214ENST00000544588 GAPVD1Q14C86 1478 aa22.92■■□□□ 1.26
CIT-214ENST00000544588 ABCA10Q8WWZ4 1543 aa22.89■■□□□ 1.26
CIT-214ENST00000544588 MAGI1Q96QZ7 1491 aaPredicted RBP22.86■■□□□ 1.25
CIT-214ENST00000544588 CYB5RLQ6IPT4 315 aa22.86■■□□□ 1.25
CIT-214ENST00000544588 WDR97A6NE52 1622 aa22.86■■□□□ 1.25
CIT-214ENST00000544588 SYNJ1O43426 1573 aa22.82■■□□□ 1.24
CIT-214ENST00000544588 TOP2BQ02880 1626 aa22.82■■□□□ 1.24
CIT-214ENST00000544588 SYNJ2O15056 1496 aa22.81■■□□□ 1.24
CIT-214ENST00000544588 ARHGEF11O15085 1522 aa22.81■■□□□ 1.24
CIT-214ENST00000544588 CHD1O14646 1710 aa22.78■■□□□ 1.24
CIT-214ENST00000544588 RIMBP3CA6NJZ7 1639 aa22.77■■□□□ 1.24
CIT-214ENST00000544588 RIMBP3BA6NNM3 1639 aa22.77■■□□□ 1.24
CIT-214ENST00000544588 RIMBP3Q9UFD9 1639 aa22.77■■□□□ 1.24
CIT-214ENST00000544588 BIVM-ERCC5R4GMW8 1640 aa22.74■■□□□ 1.23
CIT-214ENST00000544588 ABCA5Q8WWZ7 1642 aa22.71■■□□□ 1.23
CIT-214ENST00000544588 FHAD1B1AJZ9 1412 aa22.65■■□□□ 1.22
CIT-214ENST00000544588 PBRM1Q86U86 1689 aa22.65■■□□□ 1.22
CIT-214ENST00000544588 GRIN2AQ12879 1464 aa22.62■■□□□ 1.21
CIT-214ENST00000544588 CLASP1Q7Z460 1538 aa22.62■■□□□ 1.21
CIT-214ENST00000544588 ARAP1Q96P48 1450 aa22.61■■□□□ 1.21
CIT-214ENST00000544588 ERICH3Q5RHP9 1530 aa22.58■■□□□ 1.21
CIT-214ENST00000544588 KIF27Q86VH2 1401 aa22.57■■□□□ 1.2
CIT-214ENST00000544588 ADAMTS12P58397 1594 aa22.55■■□□□ 1.2
CIT-214ENST00000544588 TRHP20396 242 aaPredicted RBP22.55■■□□□ 1.2
CIT-214ENST00000544588 IGF1RP08069 1367 aa22.53■■□□□ 1.2
CIT-214ENST00000544588 NUP160Q12769 1436 aa22.52■■□□□ 1.2
CIT-214ENST00000544588 JPH4Q96JJ6 628 aa22.48■■□□□ 1.19
CIT-214ENST00000544588 CEP170Q5SW79 1584 aa22.46■■□□□ 1.19
CIT-214ENST00000544588 CARMIL1Q5VZK9 1371 aa22.41■■□□□ 1.18
CIT-214ENST00000544588 PRG4Q92954 1404 aaPredicted RBP22.39■■□□□ 1.17
CIT-214ENST00000544588 ERCC6L2Q5T890 1561 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 174.7 ms