RNA–Protein interactions for RNA: ENST00000544584.1

CLSTN3-215, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-215ENST00000544584 NISCHQ9Y2I1 1504 aa13.39□□□□□ -0.27
CLSTN3-215ENST00000544584 ABCC9O60706 1549 aa12.52□□□□□ -0.4
CLSTN3-215ENST00000544584 DNAJC5BQ9UF47 199 aa12.28□□□□□ -0.44
CLSTN3-215ENST00000544584 CCDC180Q9P1Z9 1646 aa12.09□□□□□ -0.47
CLSTN3-215ENST00000544584 RB1CC1Q8TDY2 1594 aa11.73□□□□□ -0.53
CLSTN3-215ENST00000544584 DNAJC5Q9H3Z4 198 aa11.73□□□□□ -0.53
CLSTN3-215ENST00000544584 UNC13AQ9UPW8 1703 aa11.55□□□□□ -0.56
CLSTN3-215ENST00000544584 NACADO15069 1562 aa11.52□□□□□ -0.57
CLSTN3-215ENST00000544584 PABPN1Q86U42 306 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLSTN3-215ENST00000544584 BICRAQ9NZM4 1560 aa11.44□□□□□ -0.58
CLSTN3-215ENST00000544584 CECR2Q9BXF3 1484 aa11.37□□□□□ -0.59
CLSTN3-215ENST00000544584 CC2D2AQ9P2K1 1620 aa11.35□□□□□ -0.59
CLSTN3-215ENST00000544584 DCAF8L2P0C7V8 631 aa11.35□□□□□ -0.59
CLSTN3-215ENST00000544584 SHROOM4Q9ULL8 1493 aa11.26□□□□□ -0.61
CLSTN3-215ENST00000544584 MYO15BQ96JP2 1530 aa11.22□□□□□ -0.61
CLSTN3-215ENST00000544584 EIF4G1Q04637 1599 aaKnown RBP11.18□□□□□ -0.62
CLSTN3-215ENST00000544584 CUX2O14529 1486 aa11.12□□□□□ -0.63
CLSTN3-215ENST00000544584 DCAF1Q9Y4B6 1507 aa11.11□□□□□ -0.63
CLSTN3-215ENST00000544584 ZCCHC6Q5VYS8 1495 aaKnown RBP11.11□□□□□ -0.63
CLSTN3-215ENST00000544584 SCRIBQ14160 1630 aa10.87□□□□□ -0.67
CLSTN3-215ENST00000544584 TRIM41Q8WV44 630 aa10.86□□□□□ -0.67
CLSTN3-215ENST00000544584 ERCC6Q03468 1493 aa10.84□□□□□ -0.67
CLSTN3-215ENST00000544584 THOC2Q8NI27 1593 aaKnown RBP10.71□□□□□ -0.69
CLSTN3-215ENST00000544584 NCAPD3P42695 1498 aa10.62□□□□□ -0.71
CLSTN3-215ENST00000544584 NESP48681 1621 aa10.6□□□□□ -0.71
CLSTN3-215ENST00000544584 HMGXB3Q12766 1538 aa10.53□□□□□ -0.72
CLSTN3-215ENST00000544584 KIF21AQ7Z4S6 1674 aa10.51□□□□□ -0.73
CLSTN3-215ENST00000544584 BAZ1AQ9NRL2 1556 aaPredicted RBP10.51□□□□□ -0.73
CLSTN3-215ENST00000544584 LAMC3Q9Y6N6 1575 aa10.51□□□□□ -0.73
CLSTN3-215ENST00000544584 SMARCA2P51531 1590 aa10.5□□□□□ -0.73
CLSTN3-215ENST00000544584 ATAD2BQ9ULI0 1458 aa10.49□□□□□ -0.73
CLSTN3-215ENST00000544584 RIMBP3CA6NJZ7 1639 aa10.43□□□□□ -0.74
CLSTN3-215ENST00000544584 RIMBP3BA6NNM3 1639 aa10.43□□□□□ -0.74
CLSTN3-215ENST00000544584 RIMBP3Q9UFD9 1639 aa10.43□□□□□ -0.74
CLSTN3-215ENST00000544584 OSCARQ8IYS5 282 aa10.41□□□□□ -0.74
CLSTN3-215ENST00000544584 WDR62O43379 1518 aa10.4□□□□□ -0.74
CLSTN3-215ENST00000544584 PDS5BQ9NTI5 1447 aa10.4□□□□□ -0.75
CLSTN3-215ENST00000544584 SMARCA4P51532 1647 aa10.37□□□□□ -0.75
CLSTN3-215ENST00000544584 AEBP2Q6ZN18 517 aaPredicted RBP10.37□□□□□ -0.75
CLSTN3-215ENST00000544584 MRC2Q9UBG0 1479 aa10.36□□□□□ -0.75
CLSTN3-215ENST00000544584 BAZ1BQ9UIG0 1483 aaKnown RBP10.34□□□□□ -0.75
CLSTN3-215ENST00000544584 ARHGEF11O15085 1522 aa10.32□□□□□ -0.76
CLSTN3-215ENST00000544584 PEG3Q9GZU2 1588 aa10.31□□□□□ -0.76
CLSTN3-215ENST00000544584 MROH2BQ7Z745 1585 aa10.25□□□□□ -0.77
CLSTN3-215ENST00000544584 CADPSQ9ULU8 1353 aa10.23□□□□□ -0.77
CLSTN3-215ENST00000544584 TRHP20396 242 aaPredicted RBP10.22□□□□□ -0.77
CLSTN3-215ENST00000544584 CEP164Q9UPV0 1460 aa10.2□□□□□ -0.78
CLSTN3-215ENST00000544584 ARAP1Q96P48 1450 aa10.17□□□□□ -0.78
CLSTN3-215ENST00000544584 CYB5RLQ6IPT4 315 aa10.17□□□□□ -0.78
CLSTN3-215ENST00000544584 RSF1Q96T23 1441 aaPredicted RBP10.16□□□□□ -0.78
CLSTN3-215ENST00000544584 WIZO95785 1651 aa10.12□□□□□ -0.79
CLSTN3-215ENST00000544584 FANCD2Q9BXW9 1451 aa10.12□□□□□ -0.79
CLSTN3-215ENST00000544584 URB2Q14146 1524 aaKnown RBP10.1□□□□□ -0.79
CLSTN3-215ENST00000544584 ILDR1Q86SU0 546 aaPredicted RBP10.09□□□□□ -0.79
CLSTN3-215ENST00000544584 TOP2AP11388 1531 aaKnown RBP10.08□□□□□ -0.8
CLSTN3-215ENST00000544584 CHD1O14646 1710 aa10.06□□□□□ -0.8
CLSTN3-215ENST00000544584 ZNF608Q9ULD9 1512 aaPredicted RBP10.04□□□□□ -0.8
CLSTN3-215ENST00000544584 CFTRP13569 1480 aa10.02□□□□□ -0.81
CLSTN3-215ENST00000544584 IFT140Q96RY7 1462 aa10.02□□□□□ -0.81
CLSTN3-215ENST00000544584 EIF4G3O43432 1585 aaKnown RBP10.01□□□□□ -0.81
CLSTN3-215ENST00000544584 PRDM2Q13029 1718 aa9.98□□□□□ -0.81
CLSTN3-215ENST00000544584 CCDC88BA6NC98 1476 aa9.96□□□□□ -0.82
CLSTN3-215ENST00000544584 CLASP1Q7Z460 1538 aa9.94□□□□□ -0.82
CLSTN3-215ENST00000544584 SUPT5HO00267 1087 aaKnown RBP9.93□□□□□ -0.82
CLSTN3-215ENST00000544584 ABCC8Q09428 1581 aa9.91□□□□□ -0.82
CLSTN3-215ENST00000544584 TOPBP1Q92547 1522 aa9.88□□□□□ -0.83
CLSTN3-215ENST00000544584 TARBP1Q13395 1621 aaKnown RBP9.88□□□□□ -0.83
CLSTN3-215ENST00000544584 AQRO60306 1485 aaKnown RBP eCLIP9.85□□□□□ -0.83
CLSTN3-215ENST00000544584 KIF13AQ9H1H9 1805 aa9.85□□□□□ -0.83
CLSTN3-215ENST00000544584 SYNJ1O43426 1573 aa9.84□□□□□ -0.83
CLSTN3-215ENST00000544584 GAPVD1Q14C86 1478 aa9.82□□□□□ -0.84
CLSTN3-215ENST00000544584 DNMBPQ6XZF7 1577 aa9.81□□□□□ -0.84
CLSTN3-215ENST00000544584 FBLN2P98095 1184 aa9.81□□□□□ -0.84
CLSTN3-215ENST00000544584 KDM4FA0A1W2PPD8 638 aa9.79□□□□□ -0.84
CLSTN3-215ENST00000544584 WDR97A6NE52 1622 aa9.78□□□□□ -0.84
CLSTN3-215ENST00000544584 ERCC6L2Q5T890 1561 aa9.76□□□□□ -0.85
CLSTN3-215ENST00000544584 SNAPC4Q5SXM2 1469 aa9.76□□□□□ -0.85
CLSTN3-215ENST00000544584 MAGI1Q96QZ7 1491 aaPredicted RBP9.75□□□□□ -0.85
CLSTN3-215ENST00000544584 POLA1P09884 1462 aaPredicted RBP9.74□□□□□ -0.85
CLSTN3-215ENST00000544584 SOGA1O94964 1423 aa9.72□□□□□ -0.85
CLSTN3-215ENST00000544584 SYNJ2O15056 1496 aa9.71□□□□□ -0.86
CLSTN3-215ENST00000544584 HECW2Q9P2P5 1572 aa9.69□□□□□ -0.86
CLSTN3-215ENST00000544584 KDM6BO15054 1643 aa9.68□□□□□ -0.86
CLSTN3-215ENST00000544584 CHMP7Q8WUX9 453 aaPredicted RBP9.68□□□□□ -0.86
CLSTN3-215ENST00000544584 RAD54L2Q9Y4B4 1467 aa9.67□□□□□ -0.86
CLSTN3-215ENST00000544584 WRNQ14191 1432 aaPredicted RBP eCLIP9.67□□□□□ -0.86
CLSTN3-215ENST00000544584 TDRD9Q8NDG6 1382 aaKnown RBP9.67□□□□□ -0.86
CLSTN3-215ENST00000544584 GRIN2BQ13224 1484 aa9.66□□□□□ -0.86
CLSTN3-215ENST00000544584 FGD5Q6ZNL6 1462 aa9.66□□□□□ -0.86
CLSTN3-215ENST00000544584 FBXO41Q8TF61 875 aa9.65□□□□□ -0.86
CLSTN3-215ENST00000544584 ABCC10Q5T3U5 1492 aa9.65□□□□□ -0.87
CLSTN3-215ENST00000544584 CUX1P39880 1505 aa9.64□□□□□ -0.87
CLSTN3-215ENST00000544584 PBRM1Q86U86 1689 aa9.64□□□□□ -0.87
CLSTN3-215ENST00000544584 DIP2BQ9P265 1576 aa9.63□□□□□ -0.87
CLSTN3-215ENST00000544584 SHROOM2Q13796 1616 aa9.63□□□□□ -0.87
CLSTN3-215ENST00000544584 CEP170Q5SW79 1584 aa9.63□□□□□ -0.87
CLSTN3-215ENST00000544584 MAPKBP1O60336 1514 aa9.61□□□□□ -0.87
CLSTN3-215ENST00000544584 ADGRL1O94910 1474 aa9.6□□□□□ -0.87
CLSTN3-215ENST00000544584 ABCA10Q8WWZ4 1543 aa9.59□□□□□ -0.87
CLSTN3-215ENST00000544584 LMTK3Q96Q04 1460 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms