RNA–Protein interactions for RNA: ENST00000544454.5

LTBR-213, Transcript of lymphotoxin beta receptor, humanhuman

TSL 5

Gene LTBR, Length 632 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-213ENST00000544454 NISCHQ9Y2I1 1504 aa33.01■■■□□ 2.87
LTBR-213ENST00000544454 CCDC180Q9P1Z9 1646 aa29.21■■■□□ 2.27
LTBR-213ENST00000544454 ABCC9O60706 1549 aa28.56■■■□□ 2.16
LTBR-213ENST00000544454 DCAF8L2P0C7V8 631 aa27.61■■■□□ 2.01
LTBR-213ENST00000544454 NACADO15069 1562 aa27.52■■■□□ 2
LTBR-213ENST00000544454 RB1CC1Q8TDY2 1594 aa27.51■■□□□ 1.99
LTBR-213ENST00000544454 ZCCHC6Q5VYS8 1495 aaKnown RBP27.49■■□□□ 1.99
LTBR-213ENST00000544454 MYO15BQ96JP2 1530 aa27.42■■□□□ 1.98
LTBR-213ENST00000544454 DCAF1Q9Y4B6 1507 aa27.33■■□□□ 1.97
LTBR-213ENST00000544454 PABPN1Q86U42 306 aaKnown RBP eCLIP26.77■■□□□ 1.88
LTBR-213ENST00000544454 UNC13AQ9UPW8 1703 aa26.73■■□□□ 1.87
LTBR-213ENST00000544454 SCRIBQ14160 1630 aa26.66■■□□□ 1.86
LTBR-213ENST00000544454 BICRAQ9NZM4 1560 aa26.65■■□□□ 1.86
LTBR-213ENST00000544454 SHROOM4Q9ULL8 1493 aa26.44■■□□□ 1.82
LTBR-213ENST00000544454 DNAJC5BQ9UF47 199 aa26.2■■□□□ 1.78
LTBR-213ENST00000544454 EIF4G1Q04637 1599 aaKnown RBP25.95■■□□□ 1.75
LTBR-213ENST00000544454 CC2D2AQ9P2K1 1620 aa25.81■■□□□ 1.72
LTBR-213ENST00000544454 CECR2Q9BXF3 1484 aa25.69■■□□□ 1.7
LTBR-213ENST00000544454 BAZ1AQ9NRL2 1556 aaPredicted RBP25.56■■□□□ 1.68
LTBR-213ENST00000544454 SMARCA4P51532 1647 aa25.53■■□□□ 1.68
LTBR-213ENST00000544454 NCAPD3P42695 1498 aa25.45■■□□□ 1.66
LTBR-213ENST00000544454 ATAD2BQ9ULI0 1458 aa25.44■■□□□ 1.66
LTBR-213ENST00000544454 MROH2BQ7Z745 1585 aa25.42■■□□□ 1.66
LTBR-213ENST00000544454 SMARCA2P51531 1590 aa25.39■■□□□ 1.66
LTBR-213ENST00000544454 PEG3Q9GZU2 1588 aa25.31■■□□□ 1.64
LTBR-213ENST00000544454 HMGXB3Q12766 1538 aa25.25■■□□□ 1.63
LTBR-213ENST00000544454 BAZ1BQ9UIG0 1483 aaKnown RBP25.21■■□□□ 1.63
LTBR-213ENST00000544454 RSF1Q96T23 1441 aaPredicted RBP25.21■■□□□ 1.63
LTBR-213ENST00000544454 WIZO95785 1651 aa25.09■■□□□ 1.61
LTBR-213ENST00000544454 TOP2AP11388 1531 aaKnown RBP24.87■■□□□ 1.57
LTBR-213ENST00000544454 NESP48681 1621 aa24.73■■□□□ 1.55
LTBR-213ENST00000544454 CADPSQ9ULU8 1353 aa24.72■■□□□ 1.55
LTBR-213ENST00000544454 LAMC3Q9Y6N6 1575 aa24.69■■□□□ 1.54
LTBR-213ENST00000544454 SUPT5HO00267 1087 aaKnown RBP24.66■■□□□ 1.54
LTBR-213ENST00000544454 CCDC88BA6NC98 1476 aa24.63■■□□□ 1.53
LTBR-213ENST00000544454 ERCC6Q03468 1493 aa24.63■■□□□ 1.53
LTBR-213ENST00000544454 PDS5BQ9NTI5 1447 aa24.6■■□□□ 1.53
LTBR-213ENST00000544454 CFTRP13569 1480 aa24.57■■□□□ 1.52
LTBR-213ENST00000544454 FANCD2Q9BXW9 1451 aa24.38■■□□□ 1.49
LTBR-213ENST00000544454 KIF21AQ7Z4S6 1674 aa24.34■■□□□ 1.49
LTBR-213ENST00000544454 CUX2O14529 1486 aa24.34■■□□□ 1.49
LTBR-213ENST00000544454 CEP164Q9UPV0 1460 aa24.33■■□□□ 1.49
LTBR-213ENST00000544454 MRC2Q9UBG0 1479 aa24.28■■□□□ 1.48
LTBR-213ENST00000544454 THOC2Q8NI27 1593 aaKnown RBP24.28■■□□□ 1.48
LTBR-213ENST00000544454 PRDM2Q13029 1718 aa24.19■■□□□ 1.46
LTBR-213ENST00000544454 WDR62O43379 1518 aa24.17■■□□□ 1.46
LTBR-213ENST00000544454 URB2Q14146 1524 aaKnown RBP24.11■■□□□ 1.45
LTBR-213ENST00000544454 ABCC8Q09428 1581 aa24.05■■□□□ 1.44
LTBR-213ENST00000544454 TOPBP1Q92547 1522 aa23.99■■□□□ 1.43
LTBR-213ENST00000544454 DNMBPQ6XZF7 1577 aa23.95■■□□□ 1.42
LTBR-213ENST00000544454 IFT140Q96RY7 1462 aa23.85■■□□□ 1.41
LTBR-213ENST00000544454 CUX1P39880 1505 aa23.83■■□□□ 1.41
LTBR-213ENST00000544454 POLA1P09884 1462 aaPredicted RBP23.8■■□□□ 1.4
LTBR-213ENST00000544454 SOGA1O94964 1423 aa23.76■■□□□ 1.39
LTBR-213ENST00000544454 WRNQ14191 1432 aaPredicted RBP eCLIP23.76■■□□□ 1.39
LTBR-213ENST00000544454 FGD5Q6ZNL6 1462 aa23.74■■□□□ 1.39
LTBR-213ENST00000544454 ZNF608Q9ULD9 1512 aaPredicted RBP23.69■■□□□ 1.38
LTBR-213ENST00000544454 RAD54L2Q9Y4B4 1467 aa23.69■■□□□ 1.38
LTBR-213ENST00000544454 TARBP1Q13395 1621 aaKnown RBP23.69■■□□□ 1.38
LTBR-213ENST00000544454 TOP2BQ02880 1626 aa23.64■■□□□ 1.38
LTBR-213ENST00000544454 SYNJ1O43426 1573 aa23.61■■□□□ 1.37
LTBR-213ENST00000544454 AQRO60306 1485 aaKnown RBP eCLIP23.61■■□□□ 1.373e-7■■■■□ 25.8
LTBR-213ENST00000544454 BIVM-ERCC5R4GMW8 1640 aa23.6■■□□□ 1.37
LTBR-213ENST00000544454 TDRD9Q8NDG6 1382 aaKnown RBP23.6■■□□□ 1.37
LTBR-213ENST00000544454 DNAJC5Q9H3Z4 198 aa23.57■■□□□ 1.36
LTBR-213ENST00000544454 EIF4G3O43432 1585 aaKnown RBP23.54■■□□□ 1.36
LTBR-213ENST00000544454 ABCA10Q8WWZ4 1543 aa23.54■■□□□ 1.36
LTBR-213ENST00000544454 WDR97A6NE52 1622 aa23.52■■□□□ 1.36
LTBR-213ENST00000544454 GAPVD1Q14C86 1478 aa23.45■■□□□ 1.34
LTBR-213ENST00000544454 GRIN2BQ13224 1484 aa23.44■■□□□ 1.34
LTBR-213ENST00000544454 OSCARQ8IYS5 282 aa23.44■■□□□ 1.34
LTBR-213ENST00000544454 ABCA5Q8WWZ7 1642 aa23.37■■□□□ 1.33
LTBR-213ENST00000544454 SNAPC4Q5SXM2 1469 aa23.36■■□□□ 1.33
LTBR-213ENST00000544454 MAGI1Q96QZ7 1491 aaPredicted RBP23.36■■□□□ 1.33
LTBR-213ENST00000544454 FBLN2P98095 1184 aa23.34■■□□□ 1.33
LTBR-213ENST00000544454 CHMP7Q8WUX9 453 aaPredicted RBP23.32■■□□□ 1.32
LTBR-213ENST00000544454 TRIM41Q8WV44 630 aa23.32■■□□□ 1.32
LTBR-213ENST00000544454 KIF27Q86VH2 1401 aa23.28■■□□□ 1.32
LTBR-213ENST00000544454 SYNJ2O15056 1496 aa23.27■■□□□ 1.32
LTBR-213ENST00000544454 PBRM1Q86U86 1689 aa23.25■■□□□ 1.31
LTBR-213ENST00000544454 ERICH3Q5RHP9 1530 aa23.25■■□□□ 1.31
LTBR-213ENST00000544454 FHAD1B1AJZ9 1412 aa23.2■■□□□ 1.3
LTBR-213ENST00000544454 IGF1RP08069 1367 aa23.2■■□□□ 1.3
LTBR-213ENST00000544454 CHD1O14646 1710 aa23.18■■□□□ 1.3
LTBR-213ENST00000544454 ADAMTS12P58397 1594 aa23.14■■□□□ 1.29
LTBR-213ENST00000544454 GRIN2AQ12879 1464 aa23.11■■□□□ 1.29
LTBR-213ENST00000544454 CHIC1Q5VXU3 224 aa23.09■■□□□ 1.29
LTBR-213ENST00000544454 CARMIL1Q5VZK9 1371 aa23.05■■□□□ 1.28
LTBR-213ENST00000544454 RUSC2Q8N2Y8 1516 aa23.04■■□□□ 1.28
LTBR-213ENST00000544454 NUP160Q12769 1436 aa23.03■■□□□ 1.28
LTBR-213ENST00000544454 CLASP1Q7Z460 1538 aa23.02■■□□□ 1.28
LTBR-213ENST00000544454 CUL7Q14999 1698 aa23■■□□□ 1.27
LTBR-213ENST00000544454 CEP170Q5SW79 1584 aa22.95■■□□□ 1.26
LTBR-213ENST00000544454 ARHGEF11O15085 1522 aa22.94■■□□□ 1.26
LTBR-213ENST00000544454 CSRNP3Q8WYN3 585 aa22.9■■□□□ 1.26
LTBR-213ENST00000544454 EEA1Q15075 1411 aa22.9■■□□□ 1.26
LTBR-213ENST00000544454 RIMBP3CA6NJZ7 1639 aa22.9■■□□□ 1.26
LTBR-213ENST00000544454 RIMBP3BA6NNM3 1639 aa22.9■■□□□ 1.26
LTBR-213ENST00000544454 RIMBP3Q9UFD9 1639 aa22.9■■□□□ 1.26
LTBR-213ENST00000544454 RAPGEF2Q9Y4G8 1499 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms