RNA–Protein interactions for RNA: ENST00000544128.5

SP140-214, Transcript of SP140 nuclear body protein, humanhuman

TSL 3

Gene SP140, Length 910 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-214ENST00000544128 NISCHQ9Y2I1 1504 aa22.18■■□□□ 1.14
SP140-214ENST00000544128 AEBP2Q6ZN18 517 aaPredicted RBP21.05■□□□□ 0.96
SP140-214ENST00000544128 CHIC1Q5VXU3 224 aa21.03■□□□□ 0.96
SP140-214ENST00000544128 ABCC9O60706 1549 aa19.54■□□□□ 0.72
SP140-214ENST00000544128 CCDC180Q9P1Z9 1646 aa19.51■□□□□ 0.71
SP140-214ENST00000544128 DNAJC5BQ9UF47 199 aa19.07■□□□□ 0.64
SP140-214ENST00000544128 PHF23Q9BUL5 403 aaPredicted RBP18.57■□□□□ 0.56
SP140-214ENST00000544128 ZCCHC6Q5VYS8 1495 aaKnown RBP18.54■□□□□ 0.56
SP140-214ENST00000544128 DCAF8L2P0C7V8 631 aa18.48■□□□□ 0.55
SP140-214ENST00000544128 DCAF1Q9Y4B6 1507 aa18.33■□□□□ 0.52
SP140-214ENST00000544128 NACADO15069 1562 aa18.25■□□□□ 0.51
SP140-214ENST00000544128 MYO15BQ96JP2 1530 aa18.23■□□□□ 0.51
SP140-214ENST00000544128 RB1CC1Q8TDY2 1594 aa18.21■□□□□ 0.51
SP140-214ENST00000544128 PABPN1Q86U42 306 aaKnown RBP eCLIP18.09■□□□□ 0.49
SP140-214ENST00000544128 DNAJC5Q9H3Z4 198 aa18.02■□□□□ 0.48
SP140-214ENST00000544128 UNC13AQ9UPW8 1703 aa17.91■□□□□ 0.46
SP140-214ENST00000544128 SCRIBQ14160 1630 aa17.9■□□□□ 0.46
SP140-214ENST00000544128 SHROOM4Q9ULL8 1493 aa17.87■□□□□ 0.45
SP140-214ENST00000544128 BICRAQ9NZM4 1560 aa17.76■□□□□ 0.43
SP140-214ENST00000544128 SENP3Q9H4L4 574 aaPredicted RBP17.71■□□□□ 0.43
SP140-214ENST00000544128 CECR2Q9BXF3 1484 aa17.66■□□□□ 0.42
SP140-214ENST00000544128 CC2D2AQ9P2K1 1620 aa17.61■□□□□ 0.41
SP140-214ENST00000544128 PLPPR3Q6T4P5 718 aa17.53■□□□□ 0.4
SP140-214ENST00000544128 EIF4G1Q04637 1599 aaKnown RBP17.36■□□□□ 0.37
SP140-214ENST00000544128 BAZ1AQ9NRL2 1556 aaPredicted RBP17.15■□□□□ 0.34
SP140-214ENST00000544128 SMARCA4P51532 1647 aa17.13■□□□□ 0.33
SP140-214ENST00000544128 MROH2BQ7Z745 1585 aa17.12■□□□□ 0.33
SP140-214ENST00000544128 CUX2O14529 1486 aa17.09■□□□□ 0.33
SP140-214ENST00000544128 RSF1Q96T23 1441 aaPredicted RBP17.07■□□□□ 0.32
SP140-214ENST00000544128 SUPT5HO00267 1087 aaKnown RBP17.02■□□□□ 0.32
SP140-214ENST00000544128 WIZO95785 1651 aa16.97■□□□□ 0.31
SP140-214ENST00000544128 TRIM41Q8WV44 630 aa16.94■□□□□ 0.3
SP140-214ENST00000544128 ATAD2BQ9ULI0 1458 aa16.93■□□□□ 0.3
SP140-214ENST00000544128 SMARCA2P51531 1590 aa16.92■□□□□ 0.3
SP140-214ENST00000544128 PEG3Q9GZU2 1588 aa16.91■□□□□ 0.3
SP140-214ENST00000544128 ERCC6Q03468 1493 aa16.9■□□□□ 0.3
SP140-214ENST00000544128 NCAPD3P42695 1498 aa16.85■□□□□ 0.29
SP140-214ENST00000544128 BAZ1BQ9UIG0 1483 aaKnown RBP16.82■□□□□ 0.28
SP140-214ENST00000544128 HMGXB3Q12766 1538 aa16.79■□□□□ 0.28
SP140-214ENST00000544128 TOP2AP11388 1531 aaKnown RBP16.78■□□□□ 0.28
SP140-214ENST00000544128 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
SP140-214ENST00000544128 NESP48681 1621 aa16.59■□□□□ 0.25
SP140-214ENST00000544128 THOC2Q8NI27 1593 aaKnown RBP16.53■□□□□ 0.24
SP140-214ENST00000544128 FOXD1Q16676 465 aa16.53■□□□□ 0.24
SP140-214ENST00000544128 CADPSQ9ULU8 1353 aa16.39■□□□□ 0.21
SP140-214ENST00000544128 EHMT2Q96KQ7 1210 aa16.38■□□□□ 0.21
SP140-214ENST00000544128 KIF21AQ7Z4S6 1674 aa16.37■□□□□ 0.21
SP140-214ENST00000544128 CFTRP13569 1480 aa16.36■□□□□ 0.21
SP140-214ENST00000544128 LAMC3Q9Y6N6 1575 aa16.34■□□□□ 0.21
SP140-214ENST00000544128 ADRA2BP18089 450 aa16.33■□□□□ 0.2
SP140-214ENST00000544128 KCNA4P22459 653 aa16.29■□□□□ 0.2
SP140-214ENST00000544128 PRDM2Q13029 1718 aa16.28■□□□□ 0.2
SP140-214ENST00000544128 PDS5BQ9NTI5 1447 aa16.23■□□□□ 0.19
SP140-214ENST00000544128 OSCARQ8IYS5 282 aa16.22■□□□□ 0.19
SP140-214ENST00000544128 FANCD2Q9BXW9 1451 aa16.22■□□□□ 0.19
SP140-214ENST00000544128 CEP164Q9UPV0 1460 aa16.16■□□□□ 0.18
SP140-214ENST00000544128 ABCC8Q09428 1581 aa16.14■□□□□ 0.17
SP140-214ENST00000544128 RIMBP3CA6NJZ7 1639 aa16.13■□□□□ 0.17
SP140-214ENST00000544128 RIMBP3BA6NNM3 1639 aa16.13■□□□□ 0.17
SP140-214ENST00000544128 RIMBP3Q9UFD9 1639 aa16.13■□□□□ 0.17
SP140-214ENST00000544128 MRC2Q9UBG0 1479 aa16.12■□□□□ 0.17
SP140-214ENST00000544128 WDR62O43379 1518 aa16.11■□□□□ 0.17
SP140-214ENST00000544128 WRNQ14191 1432 aaPredicted RBP eCLIP16.08■□□□□ 0.16
SP140-214ENST00000544128 PPP6R1Q9UPN7 881 aa16.05■□□□□ 0.16
SP140-214ENST00000544128 CUX1P39880 1505 aa16.04■□□□□ 0.16
SP140-214ENST00000544128 URB2Q14146 1524 aaKnown RBP16.03■□□□□ 0.16
SP140-214ENST00000544128 SYNJ1O43426 1573 aa16.02■□□□□ 0.16
SP140-214ENST00000544128 TRHP20396 242 aaPredicted RBP16.01■□□□□ 0.15
SP140-214ENST00000544128 DNMBPQ6XZF7 1577 aa16■□□□□ 0.15
SP140-214ENST00000544128 TOPBP1Q92547 1522 aa15.99■□□□□ 0.15
SP140-214ENST00000544128 TOP2BQ02880 1626 aa15.98■□□□□ 0.15
SP140-214ENST00000544128 BIVM-ERCC5R4GMW8 1640 aa15.98■□□□□ 0.15
SP140-214ENST00000544128 ARHGEF11O15085 1522 aa15.97■□□□□ 0.15
SP140-214ENST00000544128 CYB5RLQ6IPT4 315 aa15.94■□□□□ 0.14
SP140-214ENST00000544128 FGD5Q6ZNL6 1462 aa15.92■□□□□ 0.14
SP140-214ENST00000544128 POLA1P09884 1462 aaPredicted RBP15.89■□□□□ 0.13
SP140-214ENST00000544128 SOGA1O94964 1423 aa15.85■□□□□ 0.13
SP140-214ENST00000544128 RAD54L2Q9Y4B4 1467 aa15.84■□□□□ 0.13
SP140-214ENST00000544128 TARBP1Q13395 1621 aaKnown RBP15.79■□□□□ 0.12
SP140-214ENST00000544128 IFT140Q96RY7 1462 aa15.78■□□□□ 0.12
SP140-214ENST00000544128 ABCA10Q8WWZ4 1543 aa15.76■□□□□ 0.11
SP140-214ENST00000544128 ARAP1Q96P48 1450 aa15.76■□□□□ 0.11
SP140-214ENST00000544128 FAM9AQ8IZU1 332 aaPredicted RBP15.74■□□□□ 0.11
SP140-214ENST00000544128 WDR97A6NE52 1622 aa15.74■□□□□ 0.11
SP140-214ENST00000544128 RUSC2Q8N2Y8 1516 aa15.73■□□□□ 0.11
SP140-214ENST00000544128 TDRD9Q8NDG6 1382 aaKnown RBP15.73■□□□□ 0.11
SP140-214ENST00000544128 SLC4A1APQ9BWU0 796 aaKnown RBP15.72■□□□□ 0.11
SP140-214ENST00000544128 KIF27Q86VH2 1401 aa15.71■□□□□ 0.11
SP140-214ENST00000544128 CSRNP3Q8WYN3 585 aa15.71■□□□□ 0.11
SP140-214ENST00000544128 ZNF608Q9ULD9 1512 aaPredicted RBP15.71■□□□□ 0.11
SP140-214ENST00000544128 AQRO60306 1485 aaKnown RBP eCLIP15.68■□□□□ 0.1
SP140-214ENST00000544128 GAPVD1Q14C86 1478 aa15.66■□□□□ 0.1
SP140-214ENST00000544128 EEA1Q15075 1411 aa15.66■□□□□ 0.1
SP140-214ENST00000544128 ABCA5Q8WWZ7 1642 aa15.65■□□□□ 0.1
SP140-214ENST00000544128 CHD1O14646 1710 aa15.65■□□□□ 0.1
SP140-214ENST00000544128 EIF4G3O43432 1585 aaKnown RBP15.64■□□□□ 0.09
SP140-214ENST00000544128 IGF1RP08069 1367 aa15.61■□□□□ 0.09
SP140-214ENST00000544128 PBRM1Q86U86 1689 aa15.6■□□□□ 0.09
SP140-214ENST00000544128 GRIN2BQ13224 1484 aa15.59■□□□□ 0.09
SP140-214ENST00000544128 ERICH3Q5RHP9 1530 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms