RNA–Protein interactions for RNA: ENST00000544004.1

AP000439.1-201, humanhuman

TSL 4 BASIC

Gene AP000439.1, Length 581 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP000439.1-201ENST00000544004 NISCHQ9Y2I1 1504 aa29.07■■■□□ 2.24
AP000439.1-201ENST00000544004 ABCC9O60706 1549 aa26.88■■□□□ 1.89
AP000439.1-201ENST00000544004 CCDC180Q9P1Z9 1646 aa26.33■■□□□ 1.81
AP000439.1-201ENST00000544004 DNAJC5BQ9UF47 199 aa25.7■■□□□ 1.7
AP000439.1-201ENST00000544004 RB1CC1Q8TDY2 1594 aa25.33■■□□□ 1.65
AP000439.1-201ENST00000544004 NACADO15069 1562 aa25.01■■□□□ 1.59
AP000439.1-201ENST00000544004 PABPN1Q86U42 306 aaKnown RBP eCLIP24.94■■□□□ 1.58
AP000439.1-201ENST00000544004 DCAF8L2P0C7V8 631 aa24.82■■□□□ 1.56
AP000439.1-201ENST00000544004 UNC13AQ9UPW8 1703 aa24.81■■□□□ 1.56
AP000439.1-201ENST00000544004 BICRAQ9NZM4 1560 aa24.62■■□□□ 1.53
AP000439.1-201ENST00000544004 MYO15BQ96JP2 1530 aa24.46■■□□□ 1.51
AP000439.1-201ENST00000544004 CECR2Q9BXF3 1484 aa24.26■■□□□ 1.47
AP000439.1-201ENST00000544004 CC2D2AQ9P2K1 1620 aa24.25■■□□□ 1.47
AP000439.1-201ENST00000544004 SHROOM4Q9ULL8 1493 aa24.18■■□□□ 1.46
AP000439.1-201ENST00000544004 EIF4G1Q04637 1599 aaKnown RBP24.06■■□□□ 1.44
AP000439.1-201ENST00000544004 DNAJC5Q9H3Z4 198 aa23.98■■□□□ 1.43
AP000439.1-201ENST00000544004 SCRIBQ14160 1630 aa23.97■■□□□ 1.43
AP000439.1-201ENST00000544004 ZCCHC6Q5VYS8 1495 aaKnown RBP23.97■■□□□ 1.43
AP000439.1-201ENST00000544004 DCAF1Q9Y4B6 1507 aa23.95■■□□□ 1.43
AP000439.1-201ENST00000544004 CUX2O14529 1486 aa23.36■■□□□ 1.33
AP000439.1-201ENST00000544004 ERCC6Q03468 1493 aa23.24■■□□□ 1.31
AP000439.1-201ENST00000544004 NCAPD3P42695 1498 aa23.09■■□□□ 1.29
AP000439.1-201ENST00000544004 ATAD2BQ9ULI0 1458 aa22.96■■□□□ 1.27
AP000439.1-201ENST00000544004 NESP48681 1621 aa22.93■■□□□ 1.26
AP000439.1-201ENST00000544004 HMGXB3Q12766 1538 aa22.87■■□□□ 1.25
AP000439.1-201ENST00000544004 SMARCA2P51531 1590 aa22.85■■□□□ 1.25
AP000439.1-201ENST00000544004 SMARCA4P51532 1647 aa22.81■■□□□ 1.24
AP000439.1-201ENST00000544004 THOC2Q8NI27 1593 aaKnown RBP22.8■■□□□ 1.24
AP000439.1-201ENST00000544004 TRIM41Q8WV44 630 aa22.74■■□□□ 1.23
AP000439.1-201ENST00000544004 BAZ1BQ9UIG0 1483 aaKnown RBP22.7■■□□□ 1.22
AP000439.1-201ENST00000544004 LAMC3Q9Y6N6 1575 aa22.67■■□□□ 1.22
AP000439.1-201ENST00000544004 KIF21AQ7Z4S6 1674 aa22.64■■□□□ 1.21
AP000439.1-201ENST00000544004 BAZ1AQ9NRL2 1556 aaPredicted RBP22.59■■□□□ 1.21
AP000439.1-201ENST00000544004 PEG3Q9GZU2 1588 aa22.57■■□□□ 1.2
AP000439.1-201ENST00000544004 PDS5BQ9NTI5 1447 aa22.55■■□□□ 1.2
AP000439.1-201ENST00000544004 MROH2BQ7Z745 1585 aa22.41■■□□□ 1.18
AP000439.1-201ENST00000544004 MRC2Q9UBG0 1479 aa22.39■■□□□ 1.17
AP000439.1-201ENST00000544004 CADPSQ9ULU8 1353 aa22.37■■□□□ 1.17
AP000439.1-201ENST00000544004 WDR62O43379 1518 aa22.36■■□□□ 1.17
AP000439.1-201ENST00000544004 OSCARQ8IYS5 282 aa22.21■■□□□ 1.15
AP000439.1-201ENST00000544004 CEP164Q9UPV0 1460 aa22.2■■□□□ 1.14
AP000439.1-201ENST00000544004 WIZO95785 1651 aa22.14■■□□□ 1.13
AP000439.1-201ENST00000544004 FANCD2Q9BXW9 1451 aa22.12■■□□□ 1.13
AP000439.1-201ENST00000544004 RIMBP3CA6NJZ7 1639 aa22.01■■□□□ 1.11
AP000439.1-201ENST00000544004 RIMBP3BA6NNM3 1639 aa22.01■■□□□ 1.11
AP000439.1-201ENST00000544004 RIMBP3Q9UFD9 1639 aa22.01■■□□□ 1.11
AP000439.1-201ENST00000544004 CFTRP13569 1480 aa22■■□□□ 1.11
AP000439.1-201ENST00000544004 URB2Q14146 1524 aaKnown RBP21.98■■□□□ 1.11
AP000439.1-201ENST00000544004 ARHGEF11O15085 1522 aa21.86■■□□□ 1.09
AP000439.1-201ENST00000544004 ZNF608Q9ULD9 1512 aaPredicted RBP21.8■■□□□ 1.08
AP000439.1-201ENST00000544004 TOP2AP11388 1531 aaKnown RBP21.78■■□□□ 1.08
AP000439.1-201ENST00000544004 PRDM2Q13029 1718 aa21.77■■□□□ 1.08
AP000439.1-201ENST00000544004 CYB5RLQ6IPT4 315 aa21.76■■□□□ 1.07
AP000439.1-201ENST00000544004 IFT140Q96RY7 1462 aa21.76■■□□□ 1.07
AP000439.1-201ENST00000544004 RSF1Q96T23 1441 aaPredicted RBP21.72■■□□□ 1.07
AP000439.1-201ENST00000544004 TRHP20396 242 aaPredicted RBP21.7■■□□□ 1.06
AP000439.1-201ENST00000544004 EIF4G3O43432 1585 aaKnown RBP21.66■■□□□ 1.06
AP000439.1-201ENST00000544004 TOPBP1Q92547 1522 aa21.65■■□□□ 1.06
AP000439.1-201ENST00000544004 CHD1O14646 1710 aa21.63■■□□□ 1.05
AP000439.1-201ENST00000544004 ARAP1Q96P48 1450 aa21.61■■□□□ 1.05
AP000439.1-201ENST00000544004 ABCC8Q09428 1581 aa21.56■■□□□ 1.04
AP000439.1-201ENST00000544004 CCDC88BA6NC98 1476 aa21.55■■□□□ 1.04
AP000439.1-201ENST00000544004 AQRO60306 1485 aaKnown RBP eCLIP21.54■■□□□ 1.04
AP000439.1-201ENST00000544004 FBLN2P98095 1184 aa21.52■■□□□ 1.04
AP000439.1-201ENST00000544004 DNMBPQ6XZF7 1577 aa21.52■■□□□ 1.04
AP000439.1-201ENST00000544004 TARBP1Q13395 1621 aaKnown RBP21.51■■□□□ 1.03
AP000439.1-201ENST00000544004 AEBP2Q6ZN18 517 aaPredicted RBP21.46■■□□□ 1.03
AP000439.1-201ENST00000544004 POLA1P09884 1462 aaPredicted RBP21.39■■□□□ 1.01
AP000439.1-201ENST00000544004 RAD54L2Q9Y4B4 1467 aa21.33■■□□□ 1.01
AP000439.1-201ENST00000544004 CLASP1Q7Z460 1538 aa21.33■■□□□ 1
AP000439.1-201ENST00000544004 TDRD9Q8NDG6 1382 aaKnown RBP21.32■■□□□ 1
AP000439.1-201ENST00000544004 SNAPC4Q5SXM2 1469 aa21.3■■□□□ 1
AP000439.1-201ENST00000544004 SOGA1O94964 1423 aa21.29■■□□□ 1
AP000439.1-201ENST00000544004 SYNJ1O43426 1573 aa21.27■■□□□ 1
AP000439.1-201ENST00000544004 CHMP7Q8WUX9 453 aaPredicted RBP21.26■□□□□ 0.99
AP000439.1-201ENST00000544004 WDR97A6NE52 1622 aa21.22■□□□□ 0.99
AP000439.1-201ENST00000544004 MAGI1Q96QZ7 1491 aaPredicted RBP21.2■□□□□ 0.98
AP000439.1-201ENST00000544004 FGD5Q6ZNL6 1462 aa21.19■□□□□ 0.98
AP000439.1-201ENST00000544004 GRIN2BQ13224 1484 aa21.15■□□□□ 0.98
AP000439.1-201ENST00000544004 SYNJ2O15056 1496 aa21.14■□□□□ 0.98
AP000439.1-201ENST00000544004 GAPVD1Q14C86 1478 aa21.14■□□□□ 0.98
AP000439.1-201ENST00000544004 PBRM1Q86U86 1689 aa21.08■□□□□ 0.96
AP000439.1-201ENST00000544004 CUX1P39880 1505 aa21.08■□□□□ 0.96
AP000439.1-201ENST00000544004 ERCC6L2Q5T890 1561 aa20.98■□□□□ 0.95
AP000439.1-201ENST00000544004 ABCA5Q8WWZ7 1642 aa20.93■□□□□ 0.94
AP000439.1-201ENST00000544004 ABCA10Q8WWZ4 1543 aa20.9■□□□□ 0.94
AP000439.1-201ENST00000544004 GRIN2AQ12879 1464 aa20.89■□□□□ 0.94
AP000439.1-201ENST00000544004 CEP170Q5SW79 1584 aa20.89■□□□□ 0.93
AP000439.1-201ENST00000544004 KIF13AQ9H1H9 1805 aa20.88■□□□□ 0.93
AP000439.1-201ENST00000544004 NUP160Q12769 1436 aa20.83■□□□□ 0.93
AP000439.1-201ENST00000544004 SHROOM2Q13796 1616 aa20.82■□□□□ 0.92
AP000439.1-201ENST00000544004 ADAMTS12P58397 1594 aa20.81■□□□□ 0.92
AP000439.1-201ENST00000544004 FHAD1B1AJZ9 1412 aa20.71■□□□□ 0.91
AP000439.1-201ENST00000544004 WRNQ14191 1432 aaPredicted RBP eCLIP20.7■□□□□ 0.9
AP000439.1-201ENST00000544004 PRG4Q92954 1404 aaPredicted RBP20.69■□□□□ 0.9
AP000439.1-201ENST00000544004 FAM69CQ0P6D2 419 aa20.68■□□□□ 0.9
AP000439.1-201ENST00000544004 ABCC10Q5T3U5 1492 aa20.66■□□□□ 0.9
AP000439.1-201ENST00000544004 JPH4Q96JJ6 628 aa20.64■□□□□ 0.89
AP000439.1-201ENST00000544004 ERICH3Q5RHP9 1530 aa20.63■□□□□ 0.89
AP000439.1-201ENST00000544004 KDM4FA0A1W2PPD8 638 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms