RNA–Protein interactions for RNA: ENST00000543916.5

CD9-210, Transcript of CD9 molecule, humanhuman

TSL 1 (best)

Gene CD9, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-210ENST00000543916 NISCHQ9Y2I1 1504 aa36.47■■■■□ 3.43
CD9-210ENST00000543916 CCDC180Q9P1Z9 1646 aa32.38■■■□□ 2.77
CD9-210ENST00000543916 ABCC9O60706 1549 aa31.43■■■□□ 2.62
CD9-210ENST00000543916 ZCCHC6Q5VYS8 1495 aaKnown RBP30.44■■■□□ 2.46
CD9-210ENST00000543916 NACADO15069 1562 aa30.33■■■□□ 2.45
CD9-210ENST00000543916 RB1CC1Q8TDY2 1594 aa30.32■■■□□ 2.45
CD9-210ENST00000543916 DCAF8L2P0C7V8 631 aa30.28■■■□□ 2.44
CD9-210ENST00000543916 MYO15BQ96JP2 1530 aa30.21■■■□□ 2.43
CD9-210ENST00000543916 DCAF1Q9Y4B6 1507 aa30.17■■■□□ 2.42
CD9-210ENST00000543916 UNC13AQ9UPW8 1703 aa29.76■■■□□ 2.36
CD9-210ENST00000543916 SCRIBQ14160 1630 aa29.56■■■□□ 2.32
CD9-210ENST00000543916 BICRAQ9NZM4 1560 aa29.46■■■□□ 2.31
CD9-210ENST00000543916 PABPN1Q86U42 306 aaKnown RBP eCLIP29.35■■■□□ 2.29
CD9-210ENST00000543916 SHROOM4Q9ULL8 1493 aa29.09■■■□□ 2.25
CD9-210ENST00000543916 EIF4G1Q04637 1599 aaKnown RBP28.62■■■□□ 2.17
CD9-210ENST00000543916 DNAJC5BQ9UF47 199 aa28.62■■■□□ 2.17
CD9-210ENST00000543916 CC2D2AQ9P2K1 1620 aa28.47■■■□□ 2.15
CD9-210ENST00000543916 CECR2Q9BXF3 1484 aa28.4■■■□□ 2.14
CD9-210ENST00000543916 SMARCA4P51532 1647 aa28.29■■■□□ 2.12
CD9-210ENST00000543916 BAZ1AQ9NRL2 1556 aaPredicted RBP28.24■■■□□ 2.11
CD9-210ENST00000543916 MROH2BQ7Z745 1585 aa28.13■■■□□ 2.09
CD9-210ENST00000543916 ATAD2BQ9ULI0 1458 aa28.02■■■□□ 2.08
CD9-210ENST00000543916 SMARCA2P51531 1590 aa28.01■■■□□ 2.07
CD9-210ENST00000543916 PEG3Q9GZU2 1588 aa27.99■■■□□ 2.07
CD9-210ENST00000543916 NCAPD3P42695 1498 aa27.95■■■□□ 2.07
CD9-210ENST00000543916 HMGXB3Q12766 1538 aa27.89■■■□□ 2.06
CD9-210ENST00000543916 WIZO95785 1651 aa27.87■■■□□ 2.05
CD9-210ENST00000543916 RSF1Q96T23 1441 aaPredicted RBP27.84■■■□□ 2.05
CD9-210ENST00000543916 BAZ1BQ9UIG0 1483 aaKnown RBP27.81■■■□□ 2.04
CD9-210ENST00000543916 TOP2AP11388 1531 aaKnown RBP27.56■■■□□ 2
CD9-210ENST00000543916 NESP48681 1621 aa27.28■■□□□ 1.96
CD9-210ENST00000543916 SUPT5HO00267 1087 aaKnown RBP27.26■■□□□ 1.95
CD9-210ENST00000543916 LAMC3Q9Y6N6 1575 aa27.23■■□□□ 1.95
CD9-210ENST00000543916 CCDC88BA6NC98 1476 aa27.2■■□□□ 1.95
CD9-210ENST00000543916 CADPSQ9ULU8 1353 aa27.14■■□□□ 1.94
CD9-210ENST00000543916 CFTRP13569 1480 aa27.06■■□□□ 1.92
CD9-210ENST00000543916 ERCC6Q03468 1493 aa27.04■■□□□ 1.92
CD9-210ENST00000543916 KIF21AQ7Z4S6 1674 aa27.03■■□□□ 1.92
CD9-210ENST00000543916 PRDM2Q13029 1718 aa26.99■■□□□ 1.91
CD9-210ENST00000543916 PDS5BQ9NTI5 1447 aa26.97■■□□□ 1.91
CD9-210ENST00000543916 FANCD2Q9BXW9 1451 aa26.87■■□□□ 1.89
CD9-210ENST00000543916 THOC2Q8NI27 1593 aaKnown RBP26.86■■□□□ 1.89
CD9-210ENST00000543916 CEP164Q9UPV0 1460 aa26.81■■□□□ 1.88
CD9-210ENST00000543916 MRC2Q9UBG0 1479 aa26.73■■□□□ 1.87
CD9-210ENST00000543916 CUX2O14529 1486 aa26.68■■□□□ 1.86
CD9-210ENST00000543916 WDR62O43379 1518 aa26.66■■□□□ 1.86
CD9-210ENST00000543916 URB2Q14146 1524 aaKnown RBP26.62■■□□□ 1.85
CD9-210ENST00000543916 DNMBPQ6XZF7 1577 aa26.48■■□□□ 1.83
CD9-210ENST00000543916 TOPBP1Q92547 1522 aa26.48■■□□□ 1.83
CD9-210ENST00000543916 ABCC8Q09428 1581 aa26.43■■□□□ 1.82
CD9-210ENST00000543916 CUX1P39880 1505 aa26.38■■□□□ 1.81
CD9-210ENST00000543916 POLA1P09884 1462 aaPredicted RBP26.27■■□□□ 1.8
CD9-210ENST00000543916 BIVM-ERCC5R4GMW8 1640 aa26.25■■□□□ 1.79
CD9-210ENST00000543916 SYNJ1O43426 1573 aa26.24■■□□□ 1.79
CD9-210ENST00000543916 FGD5Q6ZNL6 1462 aa26.23■■□□□ 1.79
CD9-210ENST00000543916 WRNQ14191 1432 aaPredicted RBP eCLIP26.23■■□□□ 1.79
CD9-210ENST00000543916 IFT140Q96RY7 1462 aa26.23■■□□□ 1.79
CD9-210ENST00000543916 TOP2BQ02880 1626 aa26.21■■□□□ 1.79
CD9-210ENST00000543916 TARBP1Q13395 1621 aaKnown RBP26.21■■□□□ 1.79
CD9-210ENST00000543916 RAD54L2Q9Y4B4 1467 aa26.15■■□□□ 1.78
CD9-210ENST00000543916 ZNF608Q9ULD9 1512 aaPredicted RBP26.13■■□□□ 1.77
CD9-210ENST00000543916 SOGA1O94964 1423 aa26.12■■□□□ 1.77
CD9-210ENST00000543916 WDR97A6NE52 1622 aa26.1■■□□□ 1.77
CD9-210ENST00000543916 EIF4G3O43432 1585 aaKnown RBP26.08■■□□□ 1.77
CD9-210ENST00000543916 AQRO60306 1485 aaKnown RBP eCLIP25.98■■□□□ 1.75
CD9-210ENST00000543916 ABCA10Q8WWZ4 1543 aa25.98■■□□□ 1.75
CD9-210ENST00000543916 TDRD9Q8NDG6 1382 aaKnown RBP25.95■■□□□ 1.75
CD9-210ENST00000543916 ABCA5Q8WWZ7 1642 aa25.92■■□□□ 1.74
CD9-210ENST00000543916 PBRM1Q86U86 1689 aa25.88■■□□□ 1.73
CD9-210ENST00000543916 GAPVD1Q14C86 1478 aa25.84■■□□□ 1.73
CD9-210ENST00000543916 GRIN2BQ13224 1484 aa25.8■■□□□ 1.72
CD9-210ENST00000543916 SNAPC4Q5SXM2 1469 aa25.77■■□□□ 1.72
CD9-210ENST00000543916 CHD1O14646 1710 aa25.74■■□□□ 1.71
CD9-210ENST00000543916 MAGI1Q96QZ7 1491 aaPredicted RBP25.72■■□□□ 1.71
CD9-210ENST00000543916 TRIM41Q8WV44 630 aa25.7■■□□□ 1.7
CD9-210ENST00000543916 ERICH3Q5RHP9 1530 aa25.68■■□□□ 1.7
CD9-210ENST00000543916 KIF27Q86VH2 1401 aa25.65■■□□□ 1.7
CD9-210ENST00000543916 ADAMTS12P58397 1594 aa25.65■■□□□ 1.7
CD9-210ENST00000543916 SYNJ2O15056 1496 aa25.61■■□□□ 1.69
CD9-210ENST00000543916 FBLN2P98095 1184 aa25.57■■□□□ 1.68
CD9-210ENST00000543916 CHIC1Q5VXU3 224 aa25.57■■□□□ 1.68
CD9-210ENST00000543916 DNAJC5Q9H3Z4 198 aa25.56■■□□□ 1.68
CD9-210ENST00000543916 RUSC2Q8N2Y8 1516 aa25.56■■□□□ 1.68
CD9-210ENST00000543916 OSCARQ8IYS5 282 aa25.54■■□□□ 1.68
CD9-210ENST00000543916 FHAD1B1AJZ9 1412 aa25.54■■□□□ 1.68
CD9-210ENST00000543916 CUL7Q14999 1698 aa25.52■■□□□ 1.68
CD9-210ENST00000543916 CHMP7Q8WUX9 453 aaPredicted RBP25.52■■□□□ 1.68
CD9-210ENST00000543916 IGF1RP08069 1367 aa25.52■■□□□ 1.68
CD9-210ENST00000543916 GRIN2AQ12879 1464 aa25.5■■□□□ 1.67
CD9-210ENST00000543916 CLASP1Q7Z460 1538 aa25.42■■□□□ 1.66
CD9-210ENST00000543916 CEP170Q5SW79 1584 aa25.4■■□□□ 1.66
CD9-210ENST00000543916 CARMIL1Q5VZK9 1371 aa25.37■■□□□ 1.65
CD9-210ENST00000543916 NUP160Q12769 1436 aa25.37■■□□□ 1.65
CD9-210ENST00000543916 EEA1Q15075 1411 aa25.3■■□□□ 1.64
CD9-210ENST00000543916 RAPGEF2Q9Y4G8 1499 aa25.27■■□□□ 1.64
CD9-210ENST00000543916 RIMBP3CA6NJZ7 1639 aa25.25■■□□□ 1.63
CD9-210ENST00000543916 RIMBP3BA6NNM3 1639 aa25.25■■□□□ 1.63
CD9-210ENST00000543916 RIMBP3Q9UFD9 1639 aa25.25■■□□□ 1.63
CD9-210ENST00000543916 PRXQ9BXM0 1461 aa25.24■■□□□ 1.63
CD9-210ENST00000543916 ARHGEF11O15085 1522 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms