RNA–Protein interactions for RNA: ENST00000543755.1

CD4-211, Transcript of CD4 molecule, humanhuman

TSL 4

Gene CD4, Length 494 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-211ENST00000543755 NISCHQ9Y2I1 1504 aa22.6■■□□□ 1.21
CD4-211ENST00000543755 ABCC9O60706 1549 aa21.75■■□□□ 1.07
CD4-211ENST00000543755 DNAJC5BQ9UF47 199 aa21.28■■□□□ 1
CD4-211ENST00000543755 CCDC180Q9P1Z9 1646 aa20.64■□□□□ 0.89
CD4-211ENST00000543755 DNAJC5Q9H3Z4 198 aa20.27■□□□□ 0.84
CD4-211ENST00000543755 RB1CC1Q8TDY2 1594 aa20.16■□□□□ 0.82
CD4-211ENST00000543755 PABPN1Q86U42 306 aaKnown RBP eCLIP20.13■□□□□ 0.81
CD4-211ENST00000543755 NACADO15069 1562 aa19.74■□□□□ 0.75
CD4-211ENST00000543755 CECR2Q9BXF3 1484 aa19.67■□□□□ 0.74
CD4-211ENST00000543755 DCAF8L2P0C7V8 631 aa19.67■□□□□ 0.74
CD4-211ENST00000543755 UNC13AQ9UPW8 1703 aa19.59■□□□□ 0.73
CD4-211ENST00000543755 BICRAQ9NZM4 1560 aa19.57■□□□□ 0.72
CD4-211ENST00000543755 CC2D2AQ9P2K1 1620 aa19.51■□□□□ 0.71
CD4-211ENST00000543755 EIF4G1Q04637 1599 aaKnown RBP19.22■□□□□ 0.67
CD4-211ENST00000543755 SHROOM4Q9ULL8 1493 aa19.19■□□□□ 0.66
CD4-211ENST00000543755 MYO15BQ96JP2 1530 aa19.17■□□□□ 0.66
CD4-211ENST00000543755 TRIM41Q8WV44 630 aa19.12■□□□□ 0.65
CD4-211ENST00000543755 CUX2O14529 1486 aa19.09■□□□□ 0.65
CD4-211ENST00000543755 ERCC6Q03468 1493 aa18.88■□□□□ 0.61
CD4-211ENST00000543755 SCRIBQ14160 1630 aa18.82■□□□□ 0.6
CD4-211ENST00000543755 DCAF1Q9Y4B6 1507 aa18.61■□□□□ 0.57
CD4-211ENST00000543755 ZCCHC6Q5VYS8 1495 aaKnown RBP18.53■□□□□ 0.56
CD4-211ENST00000543755 NESP48681 1621 aa18.37■□□□□ 0.53
CD4-211ENST00000543755 THOC2Q8NI27 1593 aaKnown RBP18.31■□□□□ 0.52
CD4-211ENST00000543755 AEBP2Q6ZN18 517 aaPredicted RBP18.25■□□□□ 0.51
CD4-211ENST00000543755 NCAPD3P42695 1498 aa18.24■□□□□ 0.51
CD4-211ENST00000543755 SMARCA2P51531 1590 aa18.22■□□□□ 0.51
CD4-211ENST00000543755 OSCARQ8IYS5 282 aa18.11■□□□□ 0.49
CD4-211ENST00000543755 BAZ1AQ9NRL2 1556 aaPredicted RBP18.08■□□□□ 0.48
CD4-211ENST00000543755 ATAD2BQ9ULI0 1458 aa18.07■□□□□ 0.48
CD4-211ENST00000543755 KIF21AQ7Z4S6 1674 aa18.02■□□□□ 0.47
CD4-211ENST00000543755 TRHP20396 242 aaPredicted RBP18.01■□□□□ 0.47
CD4-211ENST00000543755 HMGXB3Q12766 1538 aa18■□□□□ 0.47
CD4-211ENST00000543755 LAMC3Q9Y6N6 1575 aa18■□□□□ 0.47
CD4-211ENST00000543755 PDS5BQ9NTI5 1447 aa17.99■□□□□ 0.47
CD4-211ENST00000543755 RIMBP3CA6NJZ7 1639 aa17.94■□□□□ 0.46
CD4-211ENST00000543755 RIMBP3BA6NNM3 1639 aa17.94■□□□□ 0.46
CD4-211ENST00000543755 RIMBP3Q9UFD9 1639 aa17.94■□□□□ 0.46
CD4-211ENST00000543755 MRC2Q9UBG0 1479 aa17.89■□□□□ 0.45
CD4-211ENST00000543755 BAZ1BQ9UIG0 1483 aaKnown RBP17.88■□□□□ 0.45
CD4-211ENST00000543755 WDR62O43379 1518 aa17.83■□□□□ 0.45
CD4-211ENST00000543755 CYB5RLQ6IPT4 315 aa17.81■□□□□ 0.44
CD4-211ENST00000543755 SMARCA4P51532 1647 aa17.8■□□□□ 0.44
CD4-211ENST00000543755 ARHGEF11O15085 1522 aa17.79■□□□□ 0.44
CD4-211ENST00000543755 CADPSQ9ULU8 1353 aa17.69■□□□□ 0.42
CD4-211ENST00000543755 CEP164Q9UPV0 1460 aa17.63■□□□□ 0.41
CD4-211ENST00000543755 PEG3Q9GZU2 1588 aa17.61■□□□□ 0.41
CD4-211ENST00000543755 ILDR1Q86SU0 546 aaPredicted RBP17.59■□□□□ 0.41
CD4-211ENST00000543755 ARAP1Q96P48 1450 aa17.55■□□□□ 0.4
CD4-211ENST00000543755 FANCD2Q9BXW9 1451 aa17.5■□□□□ 0.39
CD4-211ENST00000543755 URB2Q14146 1524 aaKnown RBP17.42■□□□□ 0.38
CD4-211ENST00000543755 ZNF608Q9ULD9 1512 aaPredicted RBP17.39■□□□□ 0.37
CD4-211ENST00000543755 MROH2BQ7Z745 1585 aa17.38■□□□□ 0.37
CD4-211ENST00000543755 FBLN2P98095 1184 aa17.33■□□□□ 0.36
CD4-211ENST00000543755 RSF1Q96T23 1441 aaPredicted RBP17.32■□□□□ 0.36
CD4-211ENST00000543755 IFT140Q96RY7 1462 aa17.3■□□□□ 0.36
CD4-211ENST00000543755 CFTRP13569 1480 aa17.25■□□□□ 0.35
CD4-211ENST00000543755 CHD1O14646 1710 aa17.24■□□□□ 0.35
CD4-211ENST00000543755 EIF4G3O43432 1585 aaKnown RBP17.21■□□□□ 0.35
CD4-211ENST00000543755 WIZO95785 1651 aa17.13■□□□□ 0.33
CD4-211ENST00000543755 AQRO60306 1485 aaKnown RBP eCLIP17.12■□□□□ 0.33
CD4-211ENST00000543755 TOPBP1Q92547 1522 aa17.04■□□□□ 0.32
CD4-211ENST00000543755 CLASP1Q7Z460 1538 aa17.02■□□□□ 0.32
CD4-211ENST00000543755 KDM4FA0A1W2PPD8 638 aa17.01■□□□□ 0.31
CD4-211ENST00000543755 GAPVD1Q14C86 1478 aa16.99■□□□□ 0.31
CD4-211ENST00000543755 ABCC8Q09428 1581 aa16.99■□□□□ 0.31
CD4-211ENST00000543755 CHMP7Q8WUX9 453 aaPredicted RBP16.97■□□□□ 0.31
CD4-211ENST00000543755 PRDM2Q13029 1718 aa16.96■□□□□ 0.31
CD4-211ENST00000543755 SYNJ1O43426 1573 aa16.96■□□□□ 0.31
CD4-211ENST00000543755 SNAPC4Q5SXM2 1469 aa16.92■□□□□ 0.3
CD4-211ENST00000543755 TARBP1Q13395 1621 aaKnown RBP16.92■□□□□ 0.3
CD4-211ENST00000543755 TOP2AP11388 1531 aaKnown RBP16.89■□□□□ 0.29
CD4-211ENST00000543755 DNMBPQ6XZF7 1577 aa16.88■□□□□ 0.29
CD4-211ENST00000543755 TDRD9Q8NDG6 1382 aaKnown RBP16.88■□□□□ 0.29
CD4-211ENST00000543755 RAD54L2Q9Y4B4 1467 aa16.81■□□□□ 0.28
CD4-211ENST00000543755 POLA1P09884 1462 aaPredicted RBP16.8■□□□□ 0.28
CD4-211ENST00000543755 KIF13AQ9H1H9 1805 aa16.77■□□□□ 0.28
CD4-211ENST00000543755 FBXO41Q8TF61 875 aa16.77■□□□□ 0.28
CD4-211ENST00000543755 MAGI1Q96QZ7 1491 aaPredicted RBP16.77■□□□□ 0.28
CD4-211ENST00000543755 ERCC6L2Q5T890 1561 aa16.76■□□□□ 0.27
CD4-211ENST00000543755 FAM69CQ0P6D2 419 aa16.75■□□□□ 0.27
CD4-211ENST00000543755 SYNJ2O15056 1496 aa16.74■□□□□ 0.27
CD4-211ENST00000543755 SOGA1O94964 1423 aa16.74■□□□□ 0.27
CD4-211ENST00000543755 HECW2Q9P2P5 1572 aa16.72■□□□□ 0.27
CD4-211ENST00000543755 WDR97A6NE52 1622 aa16.7■□□□□ 0.26
CD4-211ENST00000543755 KDM6BO15054 1643 aa16.7■□□□□ 0.26
CD4-211ENST00000543755 CCDC88BA6NC98 1476 aa16.7■□□□□ 0.26
CD4-211ENST00000543755 GRIN2BQ13224 1484 aa16.69■□□□□ 0.26
CD4-211ENST00000543755 LMTK3Q96Q04 1460 aa16.68■□□□□ 0.26
CD4-211ENST00000543755 ADGRL1O94910 1474 aa16.64■□□□□ 0.25
CD4-211ENST00000543755 ABCC10Q5T3U5 1492 aa16.62■□□□□ 0.25
CD4-211ENST00000543755 CEP170Q5SW79 1584 aa16.59■□□□□ 0.25
CD4-211ENST00000543755 FGD5Q6ZNL6 1462 aa16.57■□□□□ 0.24
CD4-211ENST00000543755 NPM1P06748 294 aaKnown RBP eCLIP16.57■□□□□ 0.24
CD4-211ENST00000543755 DIP2BQ9P265 1576 aa16.54■□□□□ 0.24
CD4-211ENST00000543755 SOCS7O14512 581 aa16.53■□□□□ 0.24
CD4-211ENST00000543755 PBRM1Q86U86 1689 aa16.5■□□□□ 0.23
CD4-211ENST00000543755 TSPOAP1O95153 1857 aa16.48■□□□□ 0.23
CD4-211ENST00000543755 GRIN2AQ12879 1464 aa16.48■□□□□ 0.23
CD4-211ENST00000543755 ILDR2Q71H61 639 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms