RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	NISCH	Q9Y2I1	1504 aa		23.77	■■□□□ 1.4
CPSF7-221	ENST00000543545	CCDC180	Q9P1Z9	1646 aa		20.84	■□□□□ 0.93
CPSF7-221	ENST00000543545	ABCC9	O60706	1549 aa		20.34	■□□□□ 0.85
CPSF7-221	ENST00000543545	DCAF8L2	P0C7V8	631 aa		20.04	■□□□□ 0.8
CPSF7-221	ENST00000543545	ZCCHC6	Q5VYS8	1495 aa	Known RBP	19.84	■□□□□ 0.77
CPSF7-221	ENST00000543545	NACAD	O15069	1562 aa		19.64	■□□□□ 0.73
CPSF7-221	ENST00000543545	DCAF1	Q9Y4B6	1507 aa		19.61	■□□□□ 0.73
CPSF7-221	ENST00000543545	RB1CC1	Q8TDY2	1594 aa		19.59	■□□□□ 0.73
CPSF7-221	ENST00000543545	MYO15B	Q96JP2	1530 aa		19.58	■□□□□ 0.73
CPSF7-221	ENST00000543545	SCRIB	Q14160	1630 aa		19.18	■□□□□ 0.66
CPSF7-221	ENST00000543545	PABPN1	Q86U42	306 aa	Known RBP eCLIP	19.18	■□□□□ 0.66
CPSF7-221	ENST00000543545	SHROOM4	Q9ULL8	1493 aa		19.16	■□□□□ 0.66
CPSF7-221	ENST00000543545	UNC13A	Q9UPW8	1703 aa		18.95	■□□□□ 0.62
CPSF7-221	ENST00000543545	BICRA	Q9NZM4	1560 aa		18.93	■□□□□ 0.62
CPSF7-221	ENST00000543545	CECR2	Q9BXF3	1484 aa		18.53	■□□□□ 0.56
CPSF7-221	ENST00000543545	EIF4G1	Q04637	1599 aa	Known RBP	18.46	■□□□□ 0.55
CPSF7-221	ENST00000543545	DNAJC5B	Q9UF47	199 aa		18.44	■□□□□ 0.54
CPSF7-221	ENST00000543545	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	18.39	■□□□□ 0.53
CPSF7-221	ENST00000543545	MROH2B	Q7Z745	1585 aa		18.34	■□□□□ 0.53
CPSF7-221	ENST00000543545	SMARCA4	P51532	1647 aa		18.32	■□□□□ 0.52
CPSF7-221	ENST00000543545	CC2D2A	Q9P2K1	1620 aa		18.31	■□□□□ 0.52
CPSF7-221	ENST00000543545	RSF1	Q96T23	1441 aa	Predicted RBP	18.29	■□□□□ 0.52
CPSF7-221	ENST00000543545	SUPT5H	O00267	1087 aa	Known RBP	18.25	■□□□□ 0.51
CPSF7-221	ENST00000543545	ATAD2B	Q9ULI0	1458 aa		18.24	■□□□□ 0.51
CPSF7-221	ENST00000543545	SMARCA2	P51531	1590 aa		18.19	■□□□□ 0.5
CPSF7-221	ENST00000543545	NCAPD3	P42695	1498 aa		18.17	■□□□□ 0.5
CPSF7-221	ENST00000543545	BAZ1B	Q9UIG0	1483 aa	Known RBP	18.12	■□□□□ 0.49
CPSF7-221	ENST00000543545	PEG3	Q9GZU2	1588 aa		18.1	■□□□□ 0.49
CPSF7-221	ENST00000543545	WIZ	O95785	1651 aa		18.09	■□□□□ 0.49
CPSF7-221	ENST00000543545	HMGXB3	Q12766	1538 aa		18.03	■□□□□ 0.48
CPSF7-221	ENST00000543545	TOP2A	P11388	1531 aa	Known RBP	17.95	■□□□□ 0.46
CPSF7-221	ENST00000543545	CCDC88B	A6NC98	1476 aa		17.81	■□□□□ 0.44
CPSF7-221	ENST00000543545	CADPS	Q9ULU8	1353 aa		17.72	■□□□□ 0.43
CPSF7-221	ENST00000543545	NES	P48681	1621 aa		17.65	■□□□□ 0.42
CPSF7-221	ENST00000543545	CFTR	P13569	1480 aa		17.61	■□□□□ 0.41
CPSF7-221	ENST00000543545	LAMC3	Q9Y6N6	1575 aa		17.57	■□□□□ 0.4
CPSF7-221	ENST00000543545	PDS5B	Q9NTI5	1447 aa		17.57	■□□□□ 0.4
CPSF7-221	ENST00000543545	ERCC6	Q03468	1493 aa		17.54	■□□□□ 0.4
CPSF7-221	ENST00000543545	FANCD2	Q9BXW9	1451 aa		17.49	■□□□□ 0.39
CPSF7-221	ENST00000543545	CEP164	Q9UPV0	1460 aa		17.42	■□□□□ 0.38
CPSF7-221	ENST00000543545	MRC2	Q9UBG0	1479 aa		17.32	■□□□□ 0.36
CPSF7-221	ENST00000543545	KIF21A	Q7Z4S6	1674 aa		17.3	■□□□□ 0.36
CPSF7-221	ENST00000543545	PRDM2	Q13029	1718 aa		17.25	■□□□□ 0.35
CPSF7-221	ENST00000543545	WRN	Q14191	1432 aa	Predicted RBP eCLIP	17.25	■□□□□ 0.35
CPSF7-221	ENST00000543545	URB2	Q14146	1524 aa	Known RBP	17.25	■□□□□ 0.35
CPSF7-221	ENST00000543545	ABCC8	Q09428	1581 aa		17.23	■□□□□ 0.35
CPSF7-221	ENST00000543545	TOPBP1	Q92547	1522 aa		17.21	■□□□□ 0.34
CPSF7-221	ENST00000543545	TRIM41	Q8WV44	630 aa		17.2	■□□□□ 0.34
CPSF7-221	ENST00000543545	THOC2	Q8NI27	1593 aa	Known RBP	17.19	■□□□□ 0.34
CPSF7-221	ENST00000543545	WDR62	O43379	1518 aa		17.18	■□□□□ 0.34
CPSF7-221	ENST00000543545	CUX1	P39880	1505 aa		17.17	■□□□□ 0.34
CPSF7-221	ENST00000543545	DNMBP	Q6XZF7	1577 aa		17.17	■□□□□ 0.34
CPSF7-221	ENST00000543545	CUX2	O14529	1486 aa		17.14	■□□□□ 0.33
CPSF7-221	ENST00000543545	CHIC1	Q5VXU3	224 aa		17.14	■□□□□ 0.33
CPSF7-221	ENST00000543545	SOGA1	O94964	1423 aa		17.11	■□□□□ 0.33
CPSF7-221	ENST00000543545	FGD5	Q6ZNL6	1462 aa		17.11	■□□□□ 0.33
CPSF7-221	ENST00000543545	SYNJ1	O43426	1573 aa		17.09	■□□□□ 0.33
CPSF7-221	ENST00000543545	POLA1	P09884	1462 aa	Predicted RBP	17.08	■□□□□ 0.32
CPSF7-221	ENST00000543545	RAD54L2	Q9Y4B4	1467 aa		17.06	■□□□□ 0.32
CPSF7-221	ENST00000543545	TOP2B	Q02880	1626 aa		17.06	■□□□□ 0.32
CPSF7-221	ENST00000543545	IFT140	Q96RY7	1462 aa		17.05	■□□□□ 0.32
CPSF7-221	ENST00000543545	TDRD9	Q8NDG6	1382 aa	Known RBP	17	■□□□□ 0.31
CPSF7-221	ENST00000543545	BIVM-ERCC5	R4GMW8	1640 aa		16.99	■□□□□ 0.31
CPSF7-221	ENST00000543545	ZNF608	Q9ULD9	1512 aa	Predicted RBP	16.95	■□□□□ 0.3
CPSF7-221	ENST00000543545	AQR	O60306	1485 aa	Known RBP eCLIP	16.94	■□□□□ 0.3	3e-7	■■■■■ 48.1
CPSF7-221	ENST00000543545	ABCA10	Q8WWZ4	1543 aa		16.93	■□□□□ 0.3
CPSF7-221	ENST00000543545	TARBP1	Q13395	1621 aa	Known RBP	16.9	■□□□□ 0.3
CPSF7-221	ENST00000543545	KIF27	Q86VH2	1401 aa		16.89	■□□□□ 0.29
CPSF7-221	ENST00000543545	FAM9A	Q8IZU1	332 aa	Predicted RBP	16.88	■□□□□ 0.29
CPSF7-221	ENST00000543545	GAPVD1	Q14C86	1478 aa		16.86	■□□□□ 0.29
CPSF7-221	ENST00000543545	FBLN2	P98095	1184 aa		16.82	■□□□□ 0.28
CPSF7-221	ENST00000543545	GRIN2B	Q13224	1484 aa		16.81	■□□□□ 0.28
CPSF7-221	ENST00000543545	RUSC2	Q8N2Y8	1516 aa		16.8	■□□□□ 0.28
CPSF7-221	ENST00000543545	IGF1R	P08069	1367 aa		16.79	■□□□□ 0.28
CPSF7-221	ENST00000543545	EIF4G3	O43432	1585 aa	Known RBP	16.79	■□□□□ 0.28
CPSF7-221	ENST00000543545	CHMP7	Q8WUX9	453 aa	Predicted RBP	16.78	■□□□□ 0.28
CPSF7-221	ENST00000543545	CSRNP3	Q8WYN3	585 aa		16.78	■□□□□ 0.28
CPSF7-221	ENST00000543545	WDR97	A6NE52	1622 aa		16.77	■□□□□ 0.27
CPSF7-221	ENST00000543545	SNAPC4	Q5SXM2	1469 aa		16.75	■□□□□ 0.27
CPSF7-221	ENST00000543545	EEA1	Q15075	1411 aa		16.74	■□□□□ 0.27
CPSF7-221	ENST00000543545	ABCA5	Q8WWZ7	1642 aa		16.74	■□□□□ 0.27
CPSF7-221	ENST00000543545	CARMIL1	Q5VZK9	1371 aa		16.72	■□□□□ 0.27
CPSF7-221	ENST00000543545	MAGI1	Q96QZ7	1491 aa	Predicted RBP	16.71	■□□□□ 0.27
CPSF7-221	ENST00000543545	ERICH3	Q5RHP9	1530 aa		16.7	■□□□□ 0.26
CPSF7-221	ENST00000543545	FHAD1	B1AJZ9	1412 aa		16.7	■□□□□ 0.26
CPSF7-221	ENST00000543545	EHMT2	Q96KQ7	1210 aa		16.68	■□□□□ 0.26
CPSF7-221	ENST00000543545	OSCAR	Q8IYS5	282 aa		16.66	■□□□□ 0.26
CPSF7-221	ENST00000543545	SYNJ2	O15056	1496 aa		16.66	■□□□□ 0.26
CPSF7-221	ENST00000543545	PBRM1	Q86U86	1689 aa		16.62	■□□□□ 0.25
CPSF7-221	ENST00000543545	RAPGEF2	Q9Y4G8	1499 aa		16.6	■□□□□ 0.25
CPSF7-221	ENST00000543545	ADAMTS12	P58397	1594 aa		16.6	■□□□□ 0.25
CPSF7-221	ENST00000543545	PRX	Q9BXM0	1461 aa		16.58	■□□□□ 0.24
CPSF7-221	ENST00000543545	GRIN2A	Q12879	1464 aa		16.57	■□□□□ 0.24
CPSF7-221	ENST00000543545	UBTF	P17480	764 aa	Known RBP	16.57	■□□□□ 0.24
CPSF7-221	ENST00000543545	CUL7	Q14999	1698 aa		16.56	■□□□□ 0.24
CPSF7-221	ENST00000543545	LOC105371045	A0A1W2PR82	267 aa		16.5	■□□□□ 0.23
CPSF7-221	ENST00000543545	NUP160	Q12769	1436 aa		16.48	■□□□□ 0.23
CPSF7-221	ENST00000543545	GOLGA3	Q08378	1498 aa		16.48	■□□□□ 0.23
CPSF7-221	ENST00000543545	RANGAP1	P46060	587 aa	Predicted RBP	16.47	■□□□□ 0.23
CPSF7-221	ENST00000543545	CHD1	O14646	1710 aa		16.47	■□□□□ 0.23

Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms