RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 NISCHQ9Y2I1 1504 aa14.94□□□□□ -0.02
LTBR-212ENST00000543542 CCDC180Q9P1Z9 1646 aa13.25□□□□□ -0.29
LTBR-212ENST00000543542 ABCC9O60706 1549 aa12.88□□□□□ -0.35
LTBR-212ENST00000543542 DCAF8L2P0C7V8 631 aa12.57□□□□□ -0.4
LTBR-212ENST00000543542 ZCCHC6Q5VYS8 1495 aaKnown RBP12.46□□□□□ -0.41
LTBR-212ENST00000543542 RB1CC1Q8TDY2 1594 aa12.43□□□□□ -0.42
LTBR-212ENST00000543542 NACADO15069 1562 aa12.42□□□□□ -0.42
LTBR-212ENST00000543542 DCAF1Q9Y4B6 1507 aa12.34□□□□□ -0.43
LTBR-212ENST00000543542 MYO15BQ96JP2 1530 aa12.33□□□□□ -0.44
LTBR-212ENST00000543542 UNC13AQ9UPW8 1703 aa12.16□□□□□ -0.46
LTBR-212ENST00000543542 SCRIBQ14160 1630 aa12.15□□□□□ -0.47
LTBR-212ENST00000543542 PABPN1Q86U42 306 aaKnown RBP eCLIP12.06□□□□□ -0.48
LTBR-212ENST00000543542 BICRAQ9NZM4 1560 aa11.99□□□□□ -0.49
LTBR-212ENST00000543542 SHROOM4Q9ULL8 1493 aa11.97□□□□□ -0.49
LTBR-212ENST00000543542 EIF4G1Q04637 1599 aaKnown RBP11.71□□□□□ -0.54
LTBR-212ENST00000543542 CC2D2AQ9P2K1 1620 aa11.64□□□□□ -0.55
LTBR-212ENST00000543542 DNAJC5BQ9UF47 199 aa11.63□□□□□ -0.55
LTBR-212ENST00000543542 CECR2Q9BXF3 1484 aa11.63□□□□□ -0.55
LTBR-212ENST00000543542 BAZ1AQ9NRL2 1556 aaPredicted RBP11.6□□□□□ -0.55
LTBR-212ENST00000543542 SMARCA4P51532 1647 aa11.59□□□□□ -0.55
LTBR-212ENST00000543542 MROH2BQ7Z745 1585 aa11.53□□□□□ -0.56
LTBR-212ENST00000543542 SMARCA2P51531 1590 aa11.5□□□□□ -0.57
LTBR-212ENST00000543542 ATAD2BQ9ULI0 1458 aa11.47□□□□□ -0.57
LTBR-212ENST00000543542 WIZO95785 1651 aa11.44□□□□□ -0.58
LTBR-212ENST00000543542 NCAPD3P42695 1498 aa11.43□□□□□ -0.58
LTBR-212ENST00000543542 BAZ1BQ9UIG0 1483 aaKnown RBP11.43□□□□□ -0.58
LTBR-212ENST00000543542 RSF1Q96T23 1441 aaPredicted RBP11.43□□□□□ -0.58
LTBR-212ENST00000543542 PEG3Q9GZU2 1588 aa11.42□□□□□ -0.58
LTBR-212ENST00000543542 HMGXB3Q12766 1538 aa11.4□□□□□ -0.58
LTBR-212ENST00000543542 SUPT5HO00267 1087 aaKnown RBP11.34□□□□□ -0.59
LTBR-212ENST00000543542 TOP2AP11388 1531 aaKnown RBP11.3□□□□□ -0.6
LTBR-212ENST00000543542 CCDC88BA6NC98 1476 aa11.17□□□□□ -0.62
LTBR-212ENST00000543542 NESP48681 1621 aa11.16□□□□□ -0.62
LTBR-212ENST00000543542 LAMC3Q9Y6N6 1575 aa11.16□□□□□ -0.62
LTBR-212ENST00000543542 CADPSQ9ULU8 1353 aa11.13□□□□□ -0.63
LTBR-212ENST00000543542 ERCC6Q03468 1493 aa11.12□□□□□ -0.63
LTBR-212ENST00000543542 PDS5BQ9NTI5 1447 aa11.09□□□□□ -0.63
LTBR-212ENST00000543542 PRDM2Q13029 1718 aa11.06□□□□□ -0.64
LTBR-212ENST00000543542 CFTRP13569 1480 aa11.06□□□□□ -0.64
LTBR-212ENST00000543542 KIF21AQ7Z4S6 1674 aa11.06□□□□□ -0.64
LTBR-212ENST00000543542 FANCD2Q9BXW9 1451 aa11.02□□□□□ -0.65
LTBR-212ENST00000543542 CEP164Q9UPV0 1460 aa11.01□□□□□ -0.65
LTBR-212ENST00000543542 THOC2Q8NI27 1593 aaKnown RBP10.95□□□□□ -0.66
LTBR-212ENST00000543542 MRC2Q9UBG0 1479 aa10.95□□□□□ -0.66
LTBR-212ENST00000543542 CUX2O14529 1486 aa10.9□□□□□ -0.66
LTBR-212ENST00000543542 WDR62O43379 1518 aa10.89□□□□□ -0.67
LTBR-212ENST00000543542 URB2Q14146 1524 aaKnown RBP10.89□□□□□ -0.67
LTBR-212ENST00000543542 ABCC8Q09428 1581 aa10.87□□□□□ -0.67
LTBR-212ENST00000543542 DNMBPQ6XZF7 1577 aa10.86□□□□□ -0.67
LTBR-212ENST00000543542 TOPBP1Q92547 1522 aa10.85□□□□□ -0.67
LTBR-212ENST00000543542 CUX1P39880 1505 aa10.81□□□□□ -0.68
LTBR-212ENST00000543542 WRNQ14191 1432 aaPredicted RBP eCLIP10.81□□□□□ -0.68
LTBR-212ENST00000543542 FGD5Q6ZNL6 1462 aa10.77□□□□□ -0.69
LTBR-212ENST00000543542 SYNJ1O43426 1573 aa10.77□□□□□ -0.69
LTBR-212ENST00000543542 BIVM-ERCC5R4GMW8 1640 aa10.76□□□□□ -0.69
LTBR-212ENST00000543542 POLA1P09884 1462 aaPredicted RBP10.76□□□□□ -0.69
LTBR-212ENST00000543542 TOP2BQ02880 1626 aa10.76□□□□□ -0.69
LTBR-212ENST00000543542 IFT140Q96RY7 1462 aa10.75□□□□□ -0.69
LTBR-212ENST00000543542 SOGA1O94964 1423 aa10.75□□□□□ -0.69
LTBR-212ENST00000543542 RAD54L2Q9Y4B4 1467 aa10.73□□□□□ -0.69
LTBR-212ENST00000543542 TARBP1Q13395 1621 aaKnown RBP10.71□□□□□ -0.69
LTBR-212ENST00000543542 TRIM41Q8WV44 630 aa10.7□□□□□ -0.7
LTBR-212ENST00000543542 ZNF608Q9ULD9 1512 aaPredicted RBP10.68□□□□□ -0.7
LTBR-212ENST00000543542 EIF4G3O43432 1585 aaKnown RBP10.68□□□□□ -0.7
LTBR-212ENST00000543542 TDRD9Q8NDG6 1382 aaKnown RBP10.66□□□□□ -0.7
LTBR-212ENST00000543542 WDR97A6NE52 1622 aa10.66□□□□□ -0.7
LTBR-212ENST00000543542 AQRO60306 1485 aaKnown RBP eCLIP10.66□□□□□ -0.72e-7■■■■□ 24.6
LTBR-212ENST00000543542 ABCA10Q8WWZ4 1543 aa10.64□□□□□ -0.71
LTBR-212ENST00000543542 PBRM1Q86U86 1689 aa10.63□□□□□ -0.71
LTBR-212ENST00000543542 GAPVD1Q14C86 1478 aa10.62□□□□□ -0.71
LTBR-212ENST00000543542 ABCA5Q8WWZ7 1642 aa10.6□□□□□ -0.71
LTBR-212ENST00000543542 GRIN2BQ13224 1484 aa10.6□□□□□ -0.71
LTBR-212ENST00000543542 FBLN2P98095 1184 aa10.59□□□□□ -0.71
LTBR-212ENST00000543542 CHIC1Q5VXU3 224 aa10.59□□□□□ -0.71
LTBR-212ENST00000543542 KIF27Q86VH2 1401 aa10.58□□□□□ -0.72
LTBR-212ENST00000543542 SNAPC4Q5SXM2 1469 aa10.57□□□□□ -0.72
LTBR-212ENST00000543542 CHD1O14646 1710 aa10.55□□□□□ -0.72
LTBR-212ENST00000543542 MAGI1Q96QZ7 1491 aaPredicted RBP10.55□□□□□ -0.72
LTBR-212ENST00000543542 CHMP7Q8WUX9 453 aaPredicted RBP10.54□□□□□ -0.72
LTBR-212ENST00000543542 ERICH3Q5RHP9 1530 aa10.53□□□□□ -0.72
LTBR-212ENST00000543542 ADAMTS12P58397 1594 aa10.51□□□□□ -0.73
LTBR-212ENST00000543542 SYNJ2O15056 1496 aa10.5□□□□□ -0.73
LTBR-212ENST00000543542 RUSC2Q8N2Y8 1516 aa10.5□□□□□ -0.73
LTBR-212ENST00000543542 OSCARQ8IYS5 282 aa10.5□□□□□ -0.73
LTBR-212ENST00000543542 FAM9AQ8IZU1 332 aaPredicted RBP10.5□□□□□ -0.73
LTBR-212ENST00000543542 CUL7Q14999 1698 aa10.5□□□□□ -0.73
LTBR-212ENST00000543542 FHAD1B1AJZ9 1412 aa10.5□□□□□ -0.73
LTBR-212ENST00000543542 IGF1RP08069 1367 aa10.48□□□□□ -0.73
LTBR-212ENST00000543542 CARMIL1Q5VZK9 1371 aa10.46□□□□□ -0.74
LTBR-212ENST00000543542 EEA1Q15075 1411 aa10.46□□□□□ -0.74
LTBR-212ENST00000543542 GRIN2AQ12879 1464 aa10.45□□□□□ -0.74
LTBR-212ENST00000543542 CSRNP3Q8WYN3 585 aa10.43□□□□□ -0.74
LTBR-212ENST00000543542 RAPGEF2Q9Y4G8 1499 aa10.42□□□□□ -0.74
LTBR-212ENST00000543542 DNAJC5Q9H3Z4 198 aa10.4□□□□□ -0.74
LTBR-212ENST00000543542 CEP170Q5SW79 1584 aa10.39□□□□□ -0.75
LTBR-212ENST00000543542 EHMT2Q96KQ7 1210 aa10.39□□□□□ -0.75
LTBR-212ENST00000543542 NUP160Q12769 1436 aa10.37□□□□□ -0.75
LTBR-212ENST00000543542 CLASP1Q7Z460 1538 aa10.37□□□□□ -0.75
LTBR-212ENST00000543542 PRXQ9BXM0 1461 aa10.36□□□□□ -0.75
LTBR-212ENST00000543542 CTTNBP2Q8WZ74 1663 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms