RNA–Protein interactions for RNA: ENST00000543324.1

CIT-213, Transcript of citron rho-interacting serine/threonine kinase, human

TSL 3

Gene CIT, Length 497 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIT-213	ENST00000543324	DNAJC5B	Q9UF47	199 aa		16.72	■□□□□ 0.27
CIT-213	ENST00000543324	ABCC9	O60706	1549 aa		16.62	■□□□□ 0.25
CIT-213	ENST00000543324	NISCH	Q9Y2I1	1504 aa		16.57	■□□□□ 0.24
CIT-213	ENST00000543324	DNAJC5	Q9H3Z4	198 aa		16.27	■□□□□ 0.2
CIT-213	ENST00000543324	CCDC180	Q9P1Z9	1646 aa		15.47	■□□□□ 0.07
CIT-213	ENST00000543324	RB1CC1	Q8TDY2	1594 aa		15.3	■□□□□ 0.04
CIT-213	ENST00000543324	PABPN1	Q86U42	306 aa	Known RBP eCLIP	15.22	■□□□□ 0.03
CIT-213	ENST00000543324	CECR2	Q9BXF3	1484 aa		15.12	■□□□□ 0.01
CIT-213	ENST00000543324	UNC13A	Q9UPW8	1703 aa		15	□□□□□ -0.01
CIT-213	ENST00000543324	CC2D2A	Q9P2K1	1620 aa		14.99	□□□□□ -0.01
CIT-213	ENST00000543324	TRIM41	Q8WV44	630 aa		14.97	□□□□□ -0.01
CIT-213	ENST00000543324	BICRA	Q9NZM4	1560 aa		14.94	□□□□□ -0.02
CIT-213	ENST00000543324	NACAD	O15069	1562 aa		14.9	□□□□□ -0.02
CIT-213	ENST00000543324	CUX2	O14529	1486 aa		14.89	□□□□□ -0.03
CIT-213	ENST00000543324	EIF4G1	Q04637	1599 aa	Known RBP	14.65	□□□□□ -0.06
CIT-213	ENST00000543324	SHROOM4	Q9ULL8	1493 aa		14.62	□□□□□ -0.07
CIT-213	ENST00000543324	ERCC6	Q03468	1493 aa		14.42	□□□□□ -0.1
CIT-213	ENST00000543324	AEBP2	Q6ZN18	517 aa	Predicted RBP	14.41	□□□□□ -0.1
CIT-213	ENST00000543324	DCAF8L2	P0C7V8	631 aa		14.36	□□□□□ -0.11
CIT-213	ENST00000543324	MYO15B	Q96JP2	1530 aa		14.31	□□□□□ -0.12
CIT-213	ENST00000543324	ILDR1	Q86SU0	546 aa	Predicted RBP	14.14	□□□□□ -0.15
CIT-213	ENST00000543324	THOC2	Q8NI27	1593 aa	Known RBP	14.11	□□□□□ -0.15
CIT-213	ENST00000543324	SCRIB	Q14160	1630 aa		14.01	□□□□□ -0.17
CIT-213	ENST00000543324	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.96	□□□□□ -0.17
CIT-213	ENST00000543324	RIMBP3C	A6NJZ7	1639 aa		13.96	□□□□□ -0.17
CIT-213	ENST00000543324	RIMBP3B	A6NNM3	1639 aa		13.96	□□□□□ -0.17
CIT-213	ENST00000543324	RIMBP3	Q9UFD9	1639 aa		13.96	□□□□□ -0.17
CIT-213	ENST00000543324	NES	P48681	1621 aa		13.93	□□□□□ -0.18
CIT-213	ENST00000543324	OSCAR	Q8IYS5	282 aa		13.91	□□□□□ -0.18
CIT-213	ENST00000543324	TRH	P20396	242 aa	Predicted RBP	13.89	□□□□□ -0.19
CIT-213	ENST00000543324	SMARCA2	P51531	1590 aa		13.83	□□□□□ -0.2
CIT-213	ENST00000543324	ARHGEF11	O15085	1522 aa		13.77	□□□□□ -0.21
CIT-213	ENST00000543324	NCAPD3	P42695	1498 aa		13.76	□□□□□ -0.21
CIT-213	ENST00000543324	CHIC1	Q5VXU3	224 aa		13.75	□□□□□ -0.21
CIT-213	ENST00000543324	KIF21A	Q7Z4S6	1674 aa		13.75	□□□□□ -0.21
CIT-213	ENST00000543324	LAMC3	Q9Y6N6	1575 aa		13.66	□□□□□ -0.22
CIT-213	ENST00000543324	CYB5RL	Q6IPT4	315 aa		13.65	□□□□□ -0.22
CIT-213	ENST00000543324	DCAF1	Q9Y4B6	1507 aa		13.64	□□□□□ -0.23
CIT-213	ENST00000543324	WDR62	O43379	1518 aa		13.61	□□□□□ -0.23
CIT-213	ENST00000543324	PDS5B	Q9NTI5	1447 aa		13.57	□□□□□ -0.24
CIT-213	ENST00000543324	HMGXB3	Q12766	1538 aa		13.57	□□□□□ -0.24
CIT-213	ENST00000543324	MRC2	Q9UBG0	1479 aa		13.56	□□□□□ -0.24
CIT-213	ENST00000543324	ARAP1	Q96P48	1450 aa		13.55	□□□□□ -0.24
CIT-213	ENST00000543324	ATAD2B	Q9ULI0	1458 aa		13.53	□□□□□ -0.24
CIT-213	ENST00000543324	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.48	□□□□□ -0.25
CIT-213	ENST00000543324	LMTK3	Q96Q04	1460 aa		13.35	□□□□□ -0.27
CIT-213	ENST00000543324	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.3	□□□□□ -0.28
CIT-213	ENST00000543324	SOCS7	O14512	581 aa		13.3	□□□□□ -0.28
CIT-213	ENST00000543324	RSF1	Q96T23	1441 aa	Predicted RBP	13.3	□□□□□ -0.28
CIT-213	ENST00000543324	ERCC6L2	Q5T890	1561 aa		13.28	□□□□□ -0.28
CIT-213	ENST00000543324	KDM4F	A0A1W2PPD8	638 aa		13.28	□□□□□ -0.28
CIT-213	ENST00000543324	FBXO41	Q8TF61	875 aa		13.28	□□□□□ -0.28
CIT-213	ENST00000543324	CADPS	Q9ULU8	1353 aa		13.25	□□□□□ -0.29
CIT-213	ENST00000543324	CEP164	Q9UPV0	1460 aa		13.24	□□□□□ -0.29
CIT-213	ENST00000543324	SMARCA4	P51532	1647 aa		13.21	□□□□□ -0.29
CIT-213	ENST00000543324	CHD1	O14646	1710 aa		13.17	□□□□□ -0.3
CIT-213	ENST00000543324	ILDR2	Q71H61	639 aa		13.15	□□□□□ -0.3
CIT-213	ENST00000543324	HECW2	Q9P2P5	1572 aa		13.14	□□□□□ -0.31
CIT-213	ENST00000543324	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.13	□□□□□ -0.31
CIT-213	ENST00000543324	PEG3	Q9GZU2	1588 aa		13.13	□□□□□ -0.31
CIT-213	ENST00000543324	FANCD2	Q9BXW9	1451 aa		13.1	□□□□□ -0.31
CIT-213	ENST00000543324	URB2	Q14146	1524 aa	Known RBP	13.1	□□□□□ -0.31
CIT-213	ENST00000543324	EIF4G3	O43432	1585 aa	Known RBP	13.03	□□□□□ -0.32
CIT-213	ENST00000543324	IFT140	Q96RY7	1462 aa		13.03	□□□□□ -0.32
CIT-213	ENST00000543324	KIF13A	Q9H1H9	1805 aa		13.02	□□□□□ -0.33
CIT-213	ENST00000543324	CLASP1	Q7Z460	1538 aa		13.01	□□□□□ -0.33
CIT-213	ENST00000543324	DISP3	Q9P2K9	1392 aa		12.96	□□□□□ -0.33
CIT-213	ENST00000543324	SYNJ2	O15056	1496 aa		12.94	□□□□□ -0.34
CIT-213	ENST00000543324	GAPVD1	Q14C86	1478 aa		12.92	□□□□□ -0.34
CIT-213	ENST00000543324	FBLN2	P98095	1184 aa		12.91	□□□□□ -0.34
CIT-213	ENST00000543324	ADGRL1	O94910	1474 aa		12.89	□□□□□ -0.35
CIT-213	ENST00000543324	KDM6B	O15054	1643 aa		12.88	□□□□□ -0.35
CIT-213	ENST00000543324	CFTR	P13569	1480 aa		12.86	□□□□□ -0.35
CIT-213	ENST00000543324	SYNJ1	O43426	1573 aa		12.85	□□□□□ -0.35
CIT-213	ENST00000543324	AQR	O60306	1485 aa	Known RBP eCLIP	12.84	□□□□□ -0.35	3e-8	■■■■■ 26.9
CIT-213	ENST00000543324	SPATA31D1	Q6ZQQ2	1576 aa		12.78	□□□□□ -0.36
CIT-213	ENST00000543324	TARBP1	Q13395	1621 aa	Known RBP	12.75	□□□□□ -0.37
CIT-213	ENST00000543324	MROH2B	Q7Z745	1585 aa		12.75	□□□□□ -0.37
CIT-213	ENST00000543324	TOPBP1	Q92547	1522 aa		12.73	□□□□□ -0.37
CIT-213	ENST00000543324	ABCC10	Q5T3U5	1492 aa		12.72	□□□□□ -0.37
CIT-213	ENST00000543324	FAM69C	Q0P6D2	419 aa		12.69	□□□□□ -0.38
CIT-213	ENST00000543324	SNAPC4	Q5SXM2	1469 aa		12.68	□□□□□ -0.38
CIT-213	ENST00000543324	DIP2B	Q9P265	1576 aa		12.68	□□□□□ -0.38
CIT-213	ENST00000543324	PRDM2	Q13029	1718 aa		12.68	□□□□□ -0.38
CIT-213	ENST00000543324	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.64	□□□□□ -0.39
CIT-213	ENST00000543324	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.61	□□□□□ -0.39
CIT-213	ENST00000543324	TSPOAP1	O95153	1857 aa		12.61	□□□□□ -0.39
CIT-213	ENST00000543324	ABCC8	Q09428	1581 aa		12.6	□□□□□ -0.39
CIT-213	ENST00000543324	MAPKBP1	O60336	1514 aa		12.59	□□□□□ -0.39
CIT-213	ENST00000543324	DNMBP	Q6XZF7	1577 aa		12.58	□□□□□ -0.4
CIT-213	ENST00000543324	WDR97	A6NE52	1622 aa		12.55	□□□□□ -0.4
CIT-213	ENST00000543324	TOP2B	Q02880	1626 aa		12.54	□□□□□ -0.4
CIT-213	ENST00000543324	WIZ	O95785	1651 aa		12.54	□□□□□ -0.4
CIT-213	ENST00000543324	CEP170	Q5SW79	1584 aa		12.53	□□□□□ -0.4
CIT-213	ENST00000543324	TDRD9	Q8NDG6	1382 aa	Known RBP	12.53	□□□□□ -0.4
CIT-213	ENST00000543324	POLA1	P09884	1462 aa	Predicted RBP	12.53	□□□□□ -0.4
CIT-213	ENST00000543324	CERK	Q8TCT0	537 aa		12.51	□□□□□ -0.41
CIT-213	ENST00000543324	RAD54L2	Q9Y4B4	1467 aa		12.47	□□□□□ -0.41
CIT-213	ENST00000543324	SHROOM2	Q13796	1616 aa		12.47	□□□□□ -0.41
CIT-213	ENST00000543324	GRIN2B	Q13224	1484 aa		12.46	□□□□□ -0.41

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