RNA–Protein interactions for RNA: ENST00000543262.5

ME3-212, Transcript of malic enzyme 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ME3, Length 2,311 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ME3-212ENST00000543262 NISCHQ9Y2I1 1504 aa44.75■■■■■ 4.75
ME3-212ENST00000543262 CCDC180Q9P1Z9 1646 aa38.57■■■■□ 3.76
ME3-212ENST00000543262 ZCCHC6Q5VYS8 1495 aaKnown RBP37.71■■■■□ 3.63
ME3-212ENST00000543262 SHROOM4Q9ULL8 1493 aa37.29■■■■□ 3.56
ME3-212ENST00000543262 DCAF8L2P0C7V8 631 aa37.02■■■■□ 3.52
ME3-212ENST00000543262 DCAF1Q9Y4B6 1507 aa36.87■■■■□ 3.49
ME3-212ENST00000543262 SUPT5HO00267 1087 aaKnown RBP36.23■■■■□ 3.39
ME3-212ENST00000543262 MYO15BQ96JP2 1530 aa36.12■■■■□ 3.37
ME3-212ENST00000543262 ABCC9O60706 1549 aa36.07■■■■□ 3.37
ME3-212ENST00000543262 NACADO15069 1562 aa35.78■■■■□ 3.32
ME3-212ENST00000543262 SCRIBQ14160 1630 aa35.78■■■■□ 3.32
ME3-212ENST00000543262 RB1CC1Q8TDY2 1594 aa35.33■■■■□ 3.25
ME3-212ENST00000543262 RSF1Q96T23 1441 aaPredicted RBP35.05■■■■□ 3.2
ME3-212ENST00000543262 CHIC1Q5VXU3 224 aa34.97■■■■□ 3.19
ME3-212ENST00000543262 CECR2Q9BXF3 1484 aa34.84■■■■□ 3.17
ME3-212ENST00000543262 UNC13AQ9UPW8 1703 aa34.77■■■■□ 3.16
ME3-212ENST00000543262 MROH2BQ7Z745 1585 aa34.68■■■■□ 3.14
ME3-212ENST00000543262 WIZO95785 1651 aa34.47■■■■□ 3.11
ME3-212ENST00000543262 BAZ1AQ9NRL2 1556 aaPredicted RBP34.46■■■■□ 3.11
ME3-212ENST00000543262 BICRAQ9NZM4 1560 aa34.34■■■■□ 3.09
ME3-212ENST00000543262 PABPN1Q86U42 306 aaKnown RBP eCLIP34.26■■■■□ 3.07
ME3-212ENST00000543262 SMARCA4P51532 1647 aa34.25■■■■□ 3.07
ME3-212ENST00000543262 TOP2AP11388 1531 aaKnown RBP34■■■■□ 3.03
ME3-212ENST00000543262 TRIM41Q8WV44 630 aa33.92■■■■□ 3.02
ME3-212ENST00000543262 LOC105371045A0A1W2PR82 267 aa33.8■■■■□ 3
ME3-212ENST00000543262 CCDC88BA6NC98 1476 aa33.76■■■■□ 3
ME3-212ENST00000543262 SMARCA2P51531 1590 aa33.76■■■□□ 2.99
ME3-212ENST00000543262 EIF4G1Q04637 1599 aaKnown RBP33.74■■■□□ 2.99
ME3-212ENST00000543262 PEG3Q9GZU2 1588 aa33.72■■■□□ 2.99
ME3-212ENST00000543262 ATAD2BQ9ULI0 1458 aa33.52■■■□□ 2.96
ME3-212ENST00000543262 FAM9AQ8IZU1 332 aaPredicted RBP33.46■■■□□ 2.95
ME3-212ENST00000543262 BAZ1BQ9UIG0 1483 aaKnown RBP33.38■■■□□ 2.93
ME3-212ENST00000543262 ABCC8Q09428 1581 aa33.35■■■□□ 2.93
ME3-212ENST00000543262 EHMT2Q96KQ7 1210 aa33.07■■■□□ 2.89
ME3-212ENST00000543262 NCAPD3P42695 1498 aa33.06■■■□□ 2.88
ME3-212ENST00000543262 HMGXB3Q12766 1538 aa33.03■■■□□ 2.88
ME3-212ENST00000543262 PCGF6Q9BYE7 350 aa33■■■□□ 2.87
ME3-212ENST00000543262 WRNQ14191 1432 aaPredicted RBP eCLIP32.95■■■□□ 2.87
ME3-212ENST00000543262 SOGA1O94964 1423 aa32.88■■■□□ 2.85
ME3-212ENST00000543262 SYNJ1O43426 1573 aa32.82■■■□□ 2.85
ME3-212ENST00000543262 EEA1Q15075 1411 aa32.76■■■□□ 2.83
ME3-212ENST00000543262 RUSC2Q8N2Y8 1516 aa32.75■■■□□ 2.83
ME3-212ENST00000543262 TRIM26Q12899 539 aaPredicted RBP32.68■■■□□ 2.82
ME3-212ENST00000543262 CSRNP3Q8WYN3 585 aa32.67■■■□□ 2.82
ME3-212ENST00000543262 CC2D2AQ9P2K1 1620 aa32.59■■■□□ 2.81
ME3-212ENST00000543262 TOP2BQ02880 1626 aa32.57■■■□□ 2.8
ME3-212ENST00000543262 CFTRP13569 1480 aa32.56■■■□□ 2.8
ME3-212ENST00000543262 HRCP23327 699 aa32.55■■■□□ 2.8
ME3-212ENST00000543262 BIVM-ERCC5R4GMW8 1640 aa32.5■■■□□ 2.79
ME3-212ENST00000543262 TNIKQ9UKE5 1360 aa32.47■■■□□ 2.79
ME3-212ENST00000543262 GOLGA3Q08378 1498 aa32.42■■■□□ 2.78
ME3-212ENST00000543262 CEP162Q5TB80 1403 aa32.4■■■□□ 2.78
ME3-212ENST00000543262 PRDM2Q13029 1718 aa32.39■■■□□ 2.78
ME3-212ENST00000543262 UBTFP17480 764 aaKnown RBP32.39■■■□□ 2.78
ME3-212ENST00000543262 CUX1P39880 1505 aa32.36■■■□□ 2.77
ME3-212ENST00000543262 KIF21BO75037 1637 aa32.34■■■□□ 2.77
ME3-212ENST00000543262 CEP164Q9UPV0 1460 aa32.33■■■□□ 2.77
ME3-212ENST00000543262 CADPSQ9ULU8 1353 aa32.32■■■□□ 2.76
ME3-212ENST00000543262 PPARGC1BQ86YN6 1023 aaKnown RBP32.22■■■□□ 2.75
ME3-212ENST00000543262 RAPGEF2Q9Y4G8 1499 aa32.14■■■□□ 2.74
ME3-212ENST00000543262 KIF27Q86VH2 1401 aa32.03■■■□□ 2.72
ME3-212ENST00000543262 PRXQ9BXM0 1461 aa32■■■□□ 2.71
ME3-212ENST00000543262 FANCD2Q9BXW9 1451 aa31.98■■■□□ 2.71
ME3-212ENST00000543262 CLIP1P30622 1438 aa31.98■■■□□ 2.71
ME3-212ENST00000543262 ERICH3Q5RHP9 1530 aa31.97■■■□□ 2.71
ME3-212ENST00000543262 NESP48681 1621 aa31.92■■■□□ 2.7
ME3-212ENST00000543262 FGD5Q6ZNL6 1462 aa31.89■■■□□ 2.7
ME3-212ENST00000543262 CUX2O14529 1486 aa31.84■■■□□ 2.69
ME3-212ENST00000543262 TTBK1Q5TCY1 1321 aaPredicted RBP31.82■■■□□ 2.68
ME3-212ENST00000543262 LAMC3Q9Y6N6 1575 aa31.8■■■□□ 2.68
ME3-212ENST00000543262 RANGAP1P46060 587 aaPredicted RBP31.8■■■□□ 2.68
ME3-212ENST00000543262 DNMBPQ6XZF7 1577 aa31.77■■■□□ 2.68
ME3-212ENST00000543262 VPS8Q8N3P4 1428 aa31.77■■■□□ 2.68
ME3-212ENST00000543262 DNAJC5BQ9UF47 199 aa31.76■■■□□ 2.68
ME3-212ENST00000543262 IGF1RP08069 1367 aa31.73■■■□□ 2.67
ME3-212ENST00000543262 TOPBP1Q92547 1522 aa31.71■■■□□ 2.67
ME3-212ENST00000543262 ZEB1P37275 1124 aaPredicted RBP31.67■■■□□ 2.66
ME3-212ENST00000543262 POLA1P09884 1462 aaPredicted RBP31.62■■■□□ 2.65
ME3-212ENST00000543262 RAD54L2Q9Y4B4 1467 aa31.6■■■□□ 2.65
ME3-212ENST00000543262 CARMIL1Q5VZK9 1371 aa31.57■■■□□ 2.64
ME3-212ENST00000543262 ARAP1Q96P48 1450 aa31.57■■■□□ 2.64
ME3-212ENST00000543262 PDS5BQ9NTI5 1447 aa31.56■■■□□ 2.64
ME3-212ENST00000543262 ABCA10Q8WWZ4 1543 aa31.56■■■□□ 2.64
ME3-212ENST00000543262 URB2Q14146 1524 aaKnown RBP31.56■■■□□ 2.64
ME3-212ENST00000543262 APLP2Q06481 763 aa31.53■■■□□ 2.64
ME3-212ENST00000543262 KIF21AQ7Z4S6 1674 aa31.48■■■□□ 2.63
ME3-212ENST00000543262 ARHGAP35Q9NRY4 1499 aa31.43■■■□□ 2.62
ME3-212ENST00000543262 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.42■■■□□ 2.62
ME3-212ENST00000543262 WDR97A6NE52 1622 aa31.39■■■□□ 2.62
ME3-212ENST00000543262 CCER1Q8TC90 406 aaPredicted RBP31.33■■■□□ 2.61
ME3-212ENST00000543262 CUL7Q14999 1698 aa31.31■■■□□ 2.6
ME3-212ENST00000543262 ABCA5Q8WWZ7 1642 aa31.25■■■□□ 2.59
ME3-212ENST00000543262 TDRD9Q8NDG6 1382 aaKnown RBP31.25■■■□□ 2.59
ME3-212ENST00000543262 KANK4Q5T7N3 995 aaPredicted RBP31.21■■■□□ 2.59
ME3-212ENST00000543262 GAPVD1Q14C86 1478 aa31.19■■■□□ 2.58
ME3-212ENST00000543262 TARBP1Q13395 1621 aaKnown RBP31.17■■■□□ 2.58
ME3-212ENST00000543262 HNRNPUL2Q1KMD3 747 aaKnown RBP31.15■■■□□ 2.58
ME3-212ENST00000543262 MRC2Q9UBG0 1479 aa31.12■■■□□ 2.57
ME3-212ENST00000543262 CTTNBP2Q8WZ74 1663 aa31.12■■■□□ 2.57
ME3-212ENST00000543262 P3H3Q8IVL6 736 aa31.04■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms