RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 NISCHQ9Y2I1 1504 aa20.51■□□□□ 0.87
CHMP4A-209ENST00000542700 ABCC9O60706 1549 aa19.88■□□□□ 0.77
CHMP4A-209ENST00000542700 DNAJC5BQ9UF47 199 aa19.5■□□□□ 0.71
CHMP4A-209ENST00000542700 CCDC180Q9P1Z9 1646 aa18.82■□□□□ 0.6
CHMP4A-209ENST00000542700 DNAJC5Q9H3Z4 198 aa18.61■□□□□ 0.57
CHMP4A-209ENST00000542700 RB1CC1Q8TDY2 1594 aa18.42■□□□□ 0.54
CHMP4A-209ENST00000542700 PABPN1Q86U42 306 aaKnown RBP eCLIP18.35■□□□□ 0.53
CHMP4A-209ENST00000542700 NACADO15069 1562 aa18.03■□□□□ 0.48
CHMP4A-209ENST00000542700 UNC13AQ9UPW8 1703 aa17.99■□□□□ 0.47
CHMP4A-209ENST00000542700 CECR2Q9BXF3 1484 aa17.99■□□□□ 0.47
CHMP4A-209ENST00000542700 BICRAQ9NZM4 1560 aa17.93■□□□□ 0.46
CHMP4A-209ENST00000542700 CC2D2AQ9P2K1 1620 aa17.87■□□□□ 0.45
CHMP4A-209ENST00000542700 DCAF8L2P0C7V8 631 aa17.8■□□□□ 0.44
CHMP4A-209ENST00000542700 EIF4G1Q04637 1599 aaKnown RBP17.58■□□□□ 0.41
CHMP4A-209ENST00000542700 SHROOM4Q9ULL8 1493 aa17.54■□□□□ 0.4
CHMP4A-209ENST00000542700 CUX2O14529 1486 aa17.5■□□□□ 0.39
CHMP4A-209ENST00000542700 TRIM41Q8WV44 630 aa17.47■□□□□ 0.39
CHMP4A-209ENST00000542700 MYO15BQ96JP2 1530 aa17.41■□□□□ 0.38
CHMP4A-209ENST00000542700 ERCC6Q03468 1493 aa17.24■□□□□ 0.35
CHMP4A-209ENST00000542700 SCRIBQ14160 1630 aa17.17■□□□□ 0.34
CHMP4A-209ENST00000542700 DCAF1Q9Y4B6 1507 aa16.83■□□□□ 0.28
CHMP4A-209ENST00000542700 THOC2Q8NI27 1593 aaKnown RBP16.8■□□□□ 0.28
CHMP4A-209ENST00000542700 ZCCHC6Q5VYS8 1495 aaKnown RBP16.8■□□□□ 0.28
CHMP4A-209ENST00000542700 NESP48681 1621 aa16.79■□□□□ 0.28
CHMP4A-209ENST00000542700 SMARCA2P51531 1590 aa16.67■□□□□ 0.26
CHMP4A-209ENST00000542700 AEBP2Q6ZN18 517 aaPredicted RBP16.66■□□□□ 0.26
CHMP4A-209ENST00000542700 NCAPD3P42695 1498 aa16.66■□□□□ 0.26
CHMP4A-209ENST00000542700 BAZ1AQ9NRL2 1556 aaPredicted RBP16.57■□□□□ 0.24
CHMP4A-209ENST00000542700 KIF21AQ7Z4S6 1674 aa16.51■□□□□ 0.23
CHMP4A-209ENST00000542700 OSCARQ8IYS5 282 aa16.51■□□□□ 0.23
CHMP4A-209ENST00000542700 ATAD2BQ9ULI0 1458 aa16.49■□□□□ 0.23
CHMP4A-209ENST00000542700 HMGXB3Q12766 1538 aa16.46■□□□□ 0.23
CHMP4A-209ENST00000542700 LAMC3Q9Y6N6 1575 aa16.45■□□□□ 0.22
CHMP4A-209ENST00000542700 RIMBP3CA6NJZ7 1639 aa16.45■□□□□ 0.22
CHMP4A-209ENST00000542700 RIMBP3BA6NNM3 1639 aa16.45■□□□□ 0.22
CHMP4A-209ENST00000542700 RIMBP3Q9UFD9 1639 aa16.45■□□□□ 0.22
CHMP4A-209ENST00000542700 TRHP20396 242 aaPredicted RBP16.41■□□□□ 0.22
CHMP4A-209ENST00000542700 PDS5BQ9NTI5 1447 aa16.39■□□□□ 0.21
CHMP4A-209ENST00000542700 MRC2Q9UBG0 1479 aa16.35■□□□□ 0.21
CHMP4A-209ENST00000542700 WDR62O43379 1518 aa16.33■□□□□ 0.2
CHMP4A-209ENST00000542700 ARHGEF11O15085 1522 aa16.3■□□□□ 0.2
CHMP4A-209ENST00000542700 BAZ1BQ9UIG0 1483 aaKnown RBP16.3■□□□□ 0.2
CHMP4A-209ENST00000542700 CYB5RLQ6IPT4 315 aa16.24■□□□□ 0.19
CHMP4A-209ENST00000542700 SMARCA4P51532 1647 aa16.23■□□□□ 0.19
CHMP4A-209ENST00000542700 ILDR1Q86SU0 546 aaPredicted RBP16.14■□□□□ 0.17
CHMP4A-209ENST00000542700 CADPSQ9ULU8 1353 aa16.12■□□□□ 0.17
CHMP4A-209ENST00000542700 CEP164Q9UPV0 1460 aa16.09■□□□□ 0.17
CHMP4A-209ENST00000542700 ARAP1Q96P48 1450 aa16.08■□□□□ 0.16
CHMP4A-209ENST00000542700 PEG3Q9GZU2 1588 aa16.04■□□□□ 0.16
CHMP4A-209ENST00000542700 FANCD2Q9BXW9 1451 aa15.97■□□□□ 0.15
CHMP4A-209ENST00000542700 URB2Q14146 1524 aaKnown RBP15.91■□□□□ 0.14
CHMP4A-209ENST00000542700 ZNF608Q9ULD9 1512 aaPredicted RBP15.89■□□□□ 0.13
CHMP4A-209ENST00000542700 RSF1Q96T23 1441 aaPredicted RBP15.85■□□□□ 0.13
CHMP4A-209ENST00000542700 MROH2BQ7Z745 1585 aa15.83■□□□□ 0.12
CHMP4A-209ENST00000542700 CHD1O14646 1710 aa15.8■□□□□ 0.12
CHMP4A-209ENST00000542700 IFT140Q96RY7 1462 aa15.78■□□□□ 0.12
CHMP4A-209ENST00000542700 EIF4G3O43432 1585 aaKnown RBP15.75■□□□□ 0.11
CHMP4A-209ENST00000542700 FBLN2P98095 1184 aa15.73■□□□□ 0.11
CHMP4A-209ENST00000542700 CFTRP13569 1480 aa15.72■□□□□ 0.11
CHMP4A-209ENST00000542700 AQRO60306 1485 aaKnown RBP eCLIP15.6■□□□□ 0.097e-8■□□□□ 10.3
CHMP4A-209ENST00000542700 CLASP1Q7Z460 1538 aa15.59■□□□□ 0.09
CHMP4A-209ENST00000542700 WIZO95785 1651 aa15.58■□□□□ 0.08
CHMP4A-209ENST00000542700 KDM4FA0A1W2PPD8 638 aa15.57■□□□□ 0.08
CHMP4A-209ENST00000542700 TOPBP1Q92547 1522 aa15.55■□□□□ 0.08
CHMP4A-209ENST00000542700 GAPVD1Q14C86 1478 aa15.52■□□□□ 0.08
CHMP4A-209ENST00000542700 SYNJ1O43426 1573 aa15.49■□□□□ 0.07
CHMP4A-209ENST00000542700 TARBP1Q13395 1621 aaKnown RBP15.47■□□□□ 0.07
CHMP4A-209ENST00000542700 PRDM2Q13029 1718 aa15.46■□□□□ 0.06
CHMP4A-209ENST00000542700 SNAPC4Q5SXM2 1469 aa15.44■□□□□ 0.06
CHMP4A-209ENST00000542700 CHMP7Q8WUX9 453 aaPredicted RBP15.41■□□□□ 0.06
CHMP4A-209ENST00000542700 KIF13AQ9H1H9 1805 aa15.4■□□□□ 0.06
CHMP4A-209ENST00000542700 DNMBPQ6XZF7 1577 aa15.4■□□□□ 0.06
CHMP4A-209ENST00000542700 ABCC8Q09428 1581 aa15.39■□□□□ 0.05
CHMP4A-209ENST00000542700 ERCC6L2Q5T890 1561 aa15.38■□□□□ 0.05
CHMP4A-209ENST00000542700 TDRD9Q8NDG6 1382 aaKnown RBP15.36■□□□□ 0.05
CHMP4A-209ENST00000542700 HECW2Q9P2P5 1572 aa15.36■□□□□ 0.05
CHMP4A-209ENST00000542700 FBXO41Q8TF61 875 aa15.34■□□□□ 0.05
CHMP4A-209ENST00000542700 POLA1P09884 1462 aaPredicted RBP15.33■□□□□ 0.05
CHMP4A-209ENST00000542700 RAD54L2Q9Y4B4 1467 aa15.32■□□□□ 0.04
CHMP4A-209ENST00000542700 MAGI1Q96QZ7 1491 aaPredicted RBP15.31■□□□□ 0.04
CHMP4A-209ENST00000542700 TOP2AP11388 1531 aaKnown RBP15.31■□□□□ 0.04
CHMP4A-209ENST00000542700 LMTK3Q96Q04 1460 aa15.3■□□□□ 0.04
CHMP4A-209ENST00000542700 KDM6BO15054 1643 aa15.29■□□□□ 0.04
CHMP4A-209ENST00000542700 SYNJ2O15056 1496 aa15.28■□□□□ 0.04
CHMP4A-209ENST00000542700 FAM69CQ0P6D2 419 aa15.24■□□□□ 0.03
CHMP4A-209ENST00000542700 ADGRL1O94910 1474 aa15.23■□□□□ 0.03
CHMP4A-209ENST00000542700 SOGA1O94964 1423 aa15.23■□□□□ 0.03
CHMP4A-209ENST00000542700 GRIN2BQ13224 1484 aa15.21■□□□□ 0.03
CHMP4A-209ENST00000542700 WDR97A6NE52 1622 aa15.21■□□□□ 0.02
CHMP4A-209ENST00000542700 ABCC10Q5T3U5 1492 aa15.2■□□□□ 0.02
CHMP4A-209ENST00000542700 CEP170Q5SW79 1584 aa15.16■□□□□ 0.02
CHMP4A-209ENST00000542700 SOCS7O14512 581 aa15.15■□□□□ 0.02
CHMP4A-209ENST00000542700 DIP2BQ9P265 1576 aa15.15■□□□□ 0.02
CHMP4A-209ENST00000542700 CCDC88BA6NC98 1476 aa15.14■□□□□ 0.01
CHMP4A-209ENST00000542700 ILDR2Q71H61 639 aa15.11■□□□□ 0.01
CHMP4A-209ENST00000542700 FGD5Q6ZNL6 1462 aa15.1■□□□□ 0.01
CHMP4A-209ENST00000542700 TSPOAP1O95153 1857 aa15.1■□□□□ 0.01
CHMP4A-209ENST00000542700 PBRM1Q86U86 1689 aa15.09■□□□□ 0.01
CHMP4A-209ENST00000542700 MAPKBP1O60336 1514 aa15.07■□□□□ 0
CHMP4A-209ENST00000542700 SHROOM2Q13796 1616 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms