RNA–Protein interactions for RNA: ENST00000542687.1

MRPL40P1-201, Transcript of mitochondrial ribosomal protein L40 pseudogene 1, humanhuman

BASIC

Gene MRPL40P1, Length 604 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL40P1-201ENST00000542687 NISCHQ9Y2I1 1504 aa18.57■□□□□ 0.56
MRPL40P1-201ENST00000542687 CCDC180Q9P1Z9 1646 aa16.23■□□□□ 0.19
MRPL40P1-201ENST00000542687 ABCC9O60706 1549 aa15.79■□□□□ 0.12
MRPL40P1-201ENST00000542687 DCAF8L2P0C7V8 631 aa15.56■□□□□ 0.08
MRPL40P1-201ENST00000542687 ZCCHC6Q5VYS8 1495 aaKnown RBP15.52■□□□□ 0.08
MRPL40P1-201ENST00000542687 DCAF1Q9Y4B6 1507 aa15.36■□□□□ 0.05
MRPL40P1-201ENST00000542687 MYO15BQ96JP2 1530 aa15.28■□□□□ 0.04
MRPL40P1-201ENST00000542687 NACADO15069 1562 aa15.27■□□□□ 0.03
MRPL40P1-201ENST00000542687 RB1CC1Q8TDY2 1594 aa15.19■□□□□ 0.02
MRPL40P1-201ENST00000542687 SHROOM4Q9ULL8 1493 aa15.01□□□□□ -0.01
MRPL40P1-201ENST00000542687 SCRIBQ14160 1630 aa14.92□□□□□ -0.02
MRPL40P1-201ENST00000542687 PABPN1Q86U42 306 aaKnown RBP eCLIP14.81□□□□□ -0.04
MRPL40P1-201ENST00000542687 DNAJC5BQ9UF47 199 aa14.81□□□□□ -0.04
MRPL40P1-201ENST00000542687 UNC13AQ9UPW8 1703 aa14.72□□□□□ -0.05
MRPL40P1-201ENST00000542687 BICRAQ9NZM4 1560 aa14.68□□□□□ -0.06
MRPL40P1-201ENST00000542687 CECR2Q9BXF3 1484 aa14.44□□□□□ -0.1
MRPL40P1-201ENST00000542687 BAZ1AQ9NRL2 1556 aaPredicted RBP14.36□□□□□ -0.11
MRPL40P1-201ENST00000542687 SUPT5HO00267 1087 aaKnown RBP14.35□□□□□ -0.11
MRPL40P1-201ENST00000542687 RSF1Q96T23 1441 aaPredicted RBP14.33□□□□□ -0.11
MRPL40P1-201ENST00000542687 MROH2BQ7Z745 1585 aa14.32□□□□□ -0.12
MRPL40P1-201ENST00000542687 EIF4G1Q04637 1599 aaKnown RBP14.29□□□□□ -0.12
MRPL40P1-201ENST00000542687 SMARCA4P51532 1647 aa14.28□□□□□ -0.12
MRPL40P1-201ENST00000542687 CC2D2AQ9P2K1 1620 aa14.27□□□□□ -0.12
MRPL40P1-201ENST00000542687 ATAD2BQ9ULI0 1458 aa14.18□□□□□ -0.14
MRPL40P1-201ENST00000542687 SMARCA2P51531 1590 aa14.16□□□□□ -0.14
MRPL40P1-201ENST00000542687 NCAPD3P42695 1498 aa14.13□□□□□ -0.15
MRPL40P1-201ENST00000542687 WIZO95785 1651 aa14.13□□□□□ -0.15
MRPL40P1-201ENST00000542687 PEG3Q9GZU2 1588 aa14.13□□□□□ -0.15
MRPL40P1-201ENST00000542687 BAZ1BQ9UIG0 1483 aaKnown RBP14.09□□□□□ -0.15
MRPL40P1-201ENST00000542687 TOP2AP11388 1531 aaKnown RBP14.03□□□□□ -0.16
MRPL40P1-201ENST00000542687 HMGXB3Q12766 1538 aa14.03□□□□□ -0.16
MRPL40P1-201ENST00000542687 CCDC88BA6NC98 1476 aa13.93□□□□□ -0.18
MRPL40P1-201ENST00000542687 CADPSQ9ULU8 1353 aa13.78□□□□□ -0.2
MRPL40P1-201ENST00000542687 DNAJC5Q9H3Z4 198 aa13.74□□□□□ -0.21
MRPL40P1-201ENST00000542687 CFTRP13569 1480 aa13.73□□□□□ -0.21
MRPL40P1-201ENST00000542687 ERCC6Q03468 1493 aa13.67□□□□□ -0.22
MRPL40P1-201ENST00000542687 NESP48681 1621 aa13.66□□□□□ -0.22
MRPL40P1-201ENST00000542687 LAMC3Q9Y6N6 1575 aa13.64□□□□□ -0.23
MRPL40P1-201ENST00000542687 PDS5BQ9NTI5 1447 aa13.64□□□□□ -0.23
MRPL40P1-201ENST00000542687 CUX2O14529 1486 aa13.6□□□□□ -0.23
MRPL40P1-201ENST00000542687 CHIC1Q5VXU3 224 aa13.59□□□□□ -0.23
MRPL40P1-201ENST00000542687 FANCD2Q9BXW9 1451 aa13.58□□□□□ -0.24
MRPL40P1-201ENST00000542687 TRIM41Q8WV44 630 aa13.55□□□□□ -0.24
MRPL40P1-201ENST00000542687 CEP164Q9UPV0 1460 aa13.52□□□□□ -0.25
MRPL40P1-201ENST00000542687 WRNQ14191 1432 aaPredicted RBP eCLIP13.51□□□□□ -0.25
MRPL40P1-201ENST00000542687 ABCC8Q09428 1581 aa13.48□□□□□ -0.25
MRPL40P1-201ENST00000542687 THOC2Q8NI27 1593 aaKnown RBP13.46□□□□□ -0.25
MRPL40P1-201ENST00000542687 KIF21AQ7Z4S6 1674 aa13.44□□□□□ -0.26
MRPL40P1-201ENST00000542687 PRDM2Q13029 1718 aa13.43□□□□□ -0.26
MRPL40P1-201ENST00000542687 MRC2Q9UBG0 1479 aa13.42□□□□□ -0.26
MRPL40P1-201ENST00000542687 CUX1P39880 1505 aa13.4□□□□□ -0.26
MRPL40P1-201ENST00000542687 URB2Q14146 1524 aaKnown RBP13.39□□□□□ -0.27
MRPL40P1-201ENST00000542687 TOPBP1Q92547 1522 aa13.38□□□□□ -0.27
MRPL40P1-201ENST00000542687 SYNJ1O43426 1573 aa13.37□□□□□ -0.27
MRPL40P1-201ENST00000542687 DNMBPQ6XZF7 1577 aa13.37□□□□□ -0.27
MRPL40P1-201ENST00000542687 TOP2BQ02880 1626 aa13.35□□□□□ -0.27
MRPL40P1-201ENST00000542687 FGD5Q6ZNL6 1462 aa13.32□□□□□ -0.28
MRPL40P1-201ENST00000542687 WDR62O43379 1518 aa13.32□□□□□ -0.28
MRPL40P1-201ENST00000542687 SOGA1O94964 1423 aa13.31□□□□□ -0.28
MRPL40P1-201ENST00000542687 BIVM-ERCC5R4GMW8 1640 aa13.31□□□□□ -0.28
MRPL40P1-201ENST00000542687 POLA1P09884 1462 aaPredicted RBP13.29□□□□□ -0.28
MRPL40P1-201ENST00000542687 RAD54L2Q9Y4B4 1467 aa13.27□□□□□ -0.29
MRPL40P1-201ENST00000542687 FAM9AQ8IZU1 332 aaPredicted RBP13.26□□□□□ -0.29
MRPL40P1-201ENST00000542687 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
MRPL40P1-201ENST00000542687 KIF27Q86VH2 1401 aa13.22□□□□□ -0.29
MRPL40P1-201ENST00000542687 TDRD9Q8NDG6 1382 aaKnown RBP13.2□□□□□ -0.3
MRPL40P1-201ENST00000542687 ABCA10Q8WWZ4 1543 aa13.2□□□□□ -0.3
MRPL40P1-201ENST00000542687 CSRNP3Q8WYN3 585 aa13.2□□□□□ -0.3
MRPL40P1-201ENST00000542687 EEA1Q15075 1411 aa13.2□□□□□ -0.3
MRPL40P1-201ENST00000542687 RUSC2Q8N2Y8 1516 aa13.17□□□□□ -0.3
MRPL40P1-201ENST00000542687 TARBP1Q13395 1621 aaKnown RBP13.14□□□□□ -0.31
MRPL40P1-201ENST00000542687 IGF1RP08069 1367 aa13.14□□□□□ -0.31
MRPL40P1-201ENST00000542687 AQRO60306 1485 aaKnown RBP eCLIP13.14□□□□□ -0.31
MRPL40P1-201ENST00000542687 GAPVD1Q14C86 1478 aa13.14□□□□□ -0.31
MRPL40P1-201ENST00000542687 ZNF608Q9ULD9 1512 aaPredicted RBP13.13□□□□□ -0.31
MRPL40P1-201ENST00000542687 GRIN2BQ13224 1484 aa13.08□□□□□ -0.32
MRPL40P1-201ENST00000542687 CARMIL1Q5VZK9 1371 aa13.07□□□□□ -0.32
MRPL40P1-201ENST00000542687 EHMT2Q96KQ7 1210 aa13.07□□□□□ -0.32
MRPL40P1-201ENST00000542687 WDR97A6NE52 1622 aa13.06□□□□□ -0.32
MRPL40P1-201ENST00000542687 LOC105371045A0A1W2PR82 267 aa13.05□□□□□ -0.32
MRPL40P1-201ENST00000542687 ERICH3Q5RHP9 1530 aa13.04□□□□□ -0.32
MRPL40P1-201ENST00000542687 ABCA5Q8WWZ7 1642 aa13.04□□□□□ -0.32
MRPL40P1-201ENST00000542687 UBTFP17480 764 aaKnown RBP13.02□□□□□ -0.33
MRPL40P1-201ENST00000542687 PRXQ9BXM0 1461 aa13.02□□□□□ -0.33
MRPL40P1-201ENST00000542687 CHMP7Q8WUX9 453 aaPredicted RBP13.01□□□□□ -0.33
MRPL40P1-201ENST00000542687 EIF4G3O43432 1585 aaKnown RBP13.01□□□□□ -0.33
MRPL40P1-201ENST00000542687 RAPGEF2Q9Y4G8 1499 aa13□□□□□ -0.33
MRPL40P1-201ENST00000542687 FHAD1B1AJZ9 1412 aa13□□□□□ -0.33
MRPL40P1-201ENST00000542687 FBLN2P98095 1184 aa13□□□□□ -0.33
MRPL40P1-201ENST00000542687 SNAPC4Q5SXM2 1469 aa12.99□□□□□ -0.33
MRPL40P1-201ENST00000542687 GOLGA3Q08378 1498 aa12.97□□□□□ -0.33
MRPL40P1-201ENST00000542687 MAGI1Q96QZ7 1491 aaPredicted RBP12.97□□□□□ -0.33
MRPL40P1-201ENST00000542687 KIF21BO75037 1637 aa12.94□□□□□ -0.34
MRPL40P1-201ENST00000542687 CUL7Q14999 1698 aa12.93□□□□□ -0.34
MRPL40P1-201ENST00000542687 SYNJ2O15056 1496 aa12.93□□□□□ -0.34
MRPL40P1-201ENST00000542687 OSCARQ8IYS5 282 aa12.93□□□□□ -0.34
MRPL40P1-201ENST00000542687 PBRM1Q86U86 1689 aa12.93□□□□□ -0.34
MRPL40P1-201ENST00000542687 TNIKQ9UKE5 1360 aa12.92□□□□□ -0.34
MRPL40P1-201ENST00000542687 ADAMTS12P58397 1594 aa12.91□□□□□ -0.34
MRPL40P1-201ENST00000542687 GRIN2AQ12879 1464 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms