RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 NISCHQ9Y2I1 1504 aa40.61■■■■■ 4.09
LIG1-204ENST00000542460 CCDC180Q9P1Z9 1646 aa35.83■■■■□ 3.33
LIG1-204ENST00000542460 ABCC9O60706 1549 aa34.75■■■■□ 3.15
LIG1-204ENST00000542460 ZCCHC6Q5VYS8 1495 aaKnown RBP33.92■■■■□ 3.02
LIG1-204ENST00000542460 DCAF8L2P0C7V8 631 aa33.82■■■■□ 3
LIG1-204ENST00000542460 DCAF1Q9Y4B6 1507 aa33.63■■■□□ 2.97
LIG1-204ENST00000542460 NACADO15069 1562 aa33.62■■■□□ 2.97
LIG1-204ENST00000542460 MYO15BQ96JP2 1530 aa33.6■■■□□ 2.97
LIG1-204ENST00000542460 RB1CC1Q8TDY2 1594 aa33.54■■■□□ 2.96
LIG1-204ENST00000542460 SCRIBQ14160 1630 aa32.75■■■□□ 2.83
LIG1-204ENST00000542460 UNC13AQ9UPW8 1703 aa32.68■■■□□ 2.82
LIG1-204ENST00000542460 PABPN1Q86U42 306 aaKnown RBP eCLIP32.51■■■□□ 2.8
LIG1-204ENST00000542460 BICRAQ9NZM4 1560 aa32.49■■■□□ 2.79
LIG1-204ENST00000542460 SHROOM4Q9ULL8 1493 aa32.39■■■□□ 2.78
LIG1-204ENST00000542460 DNAJC5BQ9UF47 199 aa32.26■■■□□ 2.75
LIG1-204ENST00000542460 EIF4G1Q04637 1599 aaKnown RBP31.61■■■□□ 2.65
LIG1-204ENST00000542460 CECR2Q9BXF3 1484 aa31.58■■■□□ 2.65
LIG1-204ENST00000542460 BAZ1AQ9NRL2 1556 aaPredicted RBP31.44■■■□□ 2.62
LIG1-204ENST00000542460 CC2D2AQ9P2K1 1620 aa31.42■■■□□ 2.62
LIG1-204ENST00000542460 SMARCA4P51532 1647 aa31.38■■■□□ 2.61
LIG1-204ENST00000542460 MROH2BQ7Z745 1585 aa31.3■■■□□ 2.6
LIG1-204ENST00000542460 RSF1Q96T23 1441 aaPredicted RBP31.15■■■□□ 2.58
LIG1-204ENST00000542460 ATAD2BQ9ULI0 1458 aa31.13■■■□□ 2.57
LIG1-204ENST00000542460 SMARCA2P51531 1590 aa31.11■■■□□ 2.57
LIG1-204ENST00000542460 PEG3Q9GZU2 1588 aa31.08■■■□□ 2.57
LIG1-204ENST00000542460 NCAPD3P42695 1498 aa31.06■■■□□ 2.56
LIG1-204ENST00000542460 WIZO95785 1651 aa30.95■■■□□ 2.55
LIG1-204ENST00000542460 HMGXB3Q12766 1538 aa30.9■■■□□ 2.54
LIG1-204ENST00000542460 BAZ1BQ9UIG0 1483 aaKnown RBP30.9■■■□□ 2.54
LIG1-204ENST00000542460 SUPT5HO00267 1087 aaKnown RBP30.76■■■□□ 2.51
LIG1-204ENST00000542460 TOP2AP11388 1531 aaKnown RBP30.68■■■□□ 2.5
LIG1-204ENST00000542460 CCDC88BA6NC98 1476 aa30.35■■■□□ 2.45
LIG1-204ENST00000542460 CADPSQ9ULU8 1353 aa30.19■■■□□ 2.42
LIG1-204ENST00000542460 NESP48681 1621 aa30.13■■■□□ 2.41
LIG1-204ENST00000542460 LAMC3Q9Y6N6 1575 aa30.12■■■□□ 2.41
LIG1-204ENST00000542460 CFTRP13569 1480 aa30.09■■■□□ 2.41
LIG1-204ENST00000542460 ERCC6Q03468 1493 aa30.01■■■□□ 2.39
LIG1-204ENST00000542460 PDS5BQ9NTI5 1447 aa29.96■■■□□ 2.39
LIG1-204ENST00000542460 FANCD2Q9BXW9 1451 aa29.81■■■□□ 2.36
LIG1-204ENST00000542460 CUX2O14529 1486 aa29.8■■■□□ 2.36
LIG1-204ENST00000542460 PRDM2Q13029 1718 aa29.77■■■□□ 2.36
LIG1-204ENST00000542460 CEP164Q9UPV0 1460 aa29.72■■■□□ 2.35
LIG1-204ENST00000542460 KIF21AQ7Z4S6 1674 aa29.72■■■□□ 2.35
LIG1-204ENST00000542460 THOC2Q8NI27 1593 aaKnown RBP29.59■■■□□ 2.33
LIG1-204ENST00000542460 MRC2Q9UBG0 1479 aa29.59■■■□□ 2.33
LIG1-204ENST00000542460 URB2Q14146 1524 aaKnown RBP29.47■■■□□ 2.31
LIG1-204ENST00000542460 WDR62O43379 1518 aa29.45■■■□□ 2.3
LIG1-204ENST00000542460 ABCC8Q09428 1581 aa29.43■■■□□ 2.3
LIG1-204ENST00000542460 DNAJC5Q9H3Z4 198 aa29.38■■■□□ 2.29
LIG1-204ENST00000542460 TOPBP1Q92547 1522 aa29.38■■■□□ 2.29
LIG1-204ENST00000542460 DNMBPQ6XZF7 1577 aa29.37■■■□□ 2.29
LIG1-204ENST00000542460 WRNQ14191 1432 aaPredicted RBP eCLIP29.36■■■□□ 2.29
LIG1-204ENST00000542460 CUX1P39880 1505 aa29.32■■■□□ 2.28
LIG1-204ENST00000542460 SYNJ1O43426 1573 aa29.2■■■□□ 2.27
LIG1-204ENST00000542460 TOP2BQ02880 1626 aa29.2■■■□□ 2.26
LIG1-204ENST00000542460 POLA1P09884 1462 aaPredicted RBP29.17■■■□□ 2.26
LIG1-204ENST00000542460 FGD5Q6ZNL6 1462 aa29.17■■■□□ 2.26
LIG1-204ENST00000542460 BIVM-ERCC5R4GMW8 1640 aa29.16■■■□□ 2.26
LIG1-204ENST00000542460 IFT140Q96RY7 1462 aa29.1■■■□□ 2.25
LIG1-204ENST00000542460 SOGA1O94964 1423 aa29.09■■■□□ 2.25
LIG1-204ENST00000542460 TRIM41Q8WV44 630 aa29.05■■■□□ 2.24
LIG1-204ENST00000542460 RAD54L2Q9Y4B4 1467 aa29.04■■■□□ 2.24
LIG1-204ENST00000542460 TARBP1Q13395 1621 aaKnown RBP28.99■■■□□ 2.23
LIG1-204ENST00000542460 CHIC1Q5VXU3 224 aa28.99■■■□□ 2.23
LIG1-204ENST00000542460 ABCA10Q8WWZ4 1543 aa28.92■■■□□ 2.22
LIG1-204ENST00000542460 ZNF608Q9ULD9 1512 aaPredicted RBP28.9■■■□□ 2.22
LIG1-204ENST00000542460 TDRD9Q8NDG6 1382 aaKnown RBP28.87■■■□□ 2.21
LIG1-204ENST00000542460 AQRO60306 1485 aaKnown RBP eCLIP28.84■■■□□ 2.216e-7■■■■■ 27.7
LIG1-204ENST00000542460 WDR97A6NE52 1622 aa28.82■■■□□ 2.2
LIG1-204ENST00000542460 EIF4G3O43432 1585 aaKnown RBP28.77■■■□□ 2.2
LIG1-204ENST00000542460 GAPVD1Q14C86 1478 aa28.75■■■□□ 2.19
LIG1-204ENST00000542460 KIF27Q86VH2 1401 aa28.72■■■□□ 2.19
LIG1-204ENST00000542460 ABCA5Q8WWZ7 1642 aa28.71■■■□□ 2.19
LIG1-204ENST00000542460 GRIN2BQ13224 1484 aa28.68■■■□□ 2.18
LIG1-204ENST00000542460 ERICH3Q5RHP9 1530 aa28.58■■■□□ 2.16
LIG1-204ENST00000542460 RUSC2Q8N2Y8 1516 aa28.57■■■□□ 2.16
LIG1-204ENST00000542460 PBRM1Q86U86 1689 aa28.56■■■□□ 2.16
LIG1-204ENST00000542460 IGF1RP08069 1367 aa28.55■■■□□ 2.16
LIG1-204ENST00000542460 SNAPC4Q5SXM2 1469 aa28.55■■■□□ 2.16
LIG1-204ENST00000542460 MAGI1Q96QZ7 1491 aaPredicted RBP28.54■■■□□ 2.16
LIG1-204ENST00000542460 EEA1Q15075 1411 aa28.49■■■□□ 2.15
LIG1-204ENST00000542460 OSCARQ8IYS5 282 aa28.48■■■□□ 2.15
LIG1-204ENST00000542460 FHAD1B1AJZ9 1412 aa28.44■■■□□ 2.14
LIG1-204ENST00000542460 FBLN2P98095 1184 aa28.43■■■□□ 2.14
LIG1-204ENST00000542460 CHMP7Q8WUX9 453 aaPredicted RBP28.43■■■□□ 2.14
LIG1-204ENST00000542460 SYNJ2O15056 1496 aa28.43■■■□□ 2.14
LIG1-204ENST00000542460 CSRNP3Q8WYN3 585 aa28.42■■■□□ 2.14
LIG1-204ENST00000542460 FAM9AQ8IZU1 332 aaPredicted RBP28.41■■■□□ 2.14
LIG1-204ENST00000542460 ADAMTS12P58397 1594 aa28.41■■■□□ 2.14
LIG1-204ENST00000542460 CARMIL1Q5VZK9 1371 aa28.39■■■□□ 2.14
LIG1-204ENST00000542460 CUL7Q14999 1698 aa28.37■■■□□ 2.13
LIG1-204ENST00000542460 GRIN2AQ12879 1464 aa28.3■■■□□ 2.12
LIG1-204ENST00000542460 CHD1O14646 1710 aa28.28■■■□□ 2.12
LIG1-204ENST00000542460 PRXQ9BXM0 1461 aa28.27■■■□□ 2.12
LIG1-204ENST00000542460 RAPGEF2Q9Y4G8 1499 aa28.26■■■□□ 2.11
LIG1-204ENST00000542460 NUP160Q12769 1436 aa28.16■■■□□ 2.1
LIG1-204ENST00000542460 RIMBP3CA6NJZ7 1639 aa28.13■■■□□ 2.09
LIG1-204ENST00000542460 RIMBP3BA6NNM3 1639 aa28.13■■■□□ 2.09
LIG1-204ENST00000542460 RIMBP3Q9UFD9 1639 aa28.13■■■□□ 2.09
LIG1-204ENST00000542460 CEP170Q5SW79 1584 aa28.1■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms