RNA–Protein interactions for RNA: ENST00000541284.5

CNOT4-212, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CNOT4, Length 3,563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-212ENST00000541284 NISCHQ9Y2I1 1504 aa21.16■□□□□ 0.98
CNOT4-212ENST00000541284 CCDC180Q9P1Z9 1646 aa18.68■□□□□ 0.58
CNOT4-212ENST00000541284 ZCCHC6Q5VYS8 1495 aaKnown RBP17.97■□□□□ 0.47
CNOT4-212ENST00000541284 DCAF1Q9Y4B6 1507 aa17.8■□□□□ 0.44
CNOT4-212ENST00000541284 MYO15BQ96JP2 1530 aa17.51■□□□□ 0.39
CNOT4-212ENST00000541284 NACADO15069 1562 aa17.03■□□□□ 0.32
CNOT4-212ENST00000541284 UNC13AQ9UPW8 1703 aa16.95■□□□□ 0.3
CNOT4-212ENST00000541284 ABCC9O60706 1549 aa16.95■□□□□ 0.3
CNOT4-212ENST00000541284 SHROOM4Q9ULL8 1493 aa16.91■□□□□ 0.3
CNOT4-212ENST00000541284 SCRIBQ14160 1630 aa16.73■□□□□ 0.27
CNOT4-212ENST00000541284 RB1CC1Q8TDY2 1594 aa16.7■□□□□ 0.26
CNOT4-212ENST00000541284 SUPT5HO00267 1087 aaKnown RBP16.54■□□□□ 0.24
CNOT4-212ENST00000541284 BICRAQ9NZM4 1560 aa16.54■□□□□ 0.24
CNOT4-212ENST00000541284 EIF4G1Q04637 1599 aaKnown RBP16.44■□□□□ 0.22
CNOT4-212ENST00000541284 RSF1Q96T23 1441 aaPredicted RBP16.4■□□□□ 0.22
CNOT4-212ENST00000541284 BAZ1AQ9NRL2 1556 aaPredicted RBP16.36■□□□□ 0.21
CNOT4-212ENST00000541284 PEG3Q9GZU2 1588 aa16.35■□□□□ 0.21
CNOT4-212ENST00000541284 MROH2BQ7Z745 1585 aa16.32■□□□□ 0.2
CNOT4-212ENST00000541284 SMARCA4P51532 1647 aa16.3■□□□□ 0.2
CNOT4-212ENST00000541284 CECR2Q9BXF3 1484 aa16.28■□□□□ 0.2
CNOT4-212ENST00000541284 WIZO95785 1651 aa16.27■□□□□ 0.2
CNOT4-212ENST00000541284 CHIC1Q5VXU3 224 aa16.27■□□□□ 0.2
CNOT4-212ENST00000541284 DCAF8L2P0C7V8 631 aa16.18■□□□□ 0.18
CNOT4-212ENST00000541284 TOP2AP11388 1531 aaKnown RBP16.12■□□□□ 0.17
CNOT4-212ENST00000541284 SMARCA2P51531 1590 aa16.04■□□□□ 0.16
CNOT4-212ENST00000541284 HRCP23327 699 aa15.87■□□□□ 0.13
CNOT4-212ENST00000541284 PRDM2Q13029 1718 aa15.84■□□□□ 0.13
CNOT4-212ENST00000541284 HMGXB3Q12766 1538 aa15.82■□□□□ 0.12
CNOT4-212ENST00000541284 CCDC88BA6NC98 1476 aa15.79■□□□□ 0.12
CNOT4-212ENST00000541284 ATAD2BQ9ULI0 1458 aa15.77■□□□□ 0.12
CNOT4-212ENST00000541284 LOC105371045A0A1W2PR82 267 aa15.74■□□□□ 0.11
CNOT4-212ENST00000541284 PCGF6Q9BYE7 350 aa15.7■□□□□ 0.1
CNOT4-212ENST00000541284 NCAPD3P42695 1498 aa15.65■□□□□ 0.1
CNOT4-212ENST00000541284 BIVM-ERCC5R4GMW8 1640 aa15.63■□□□□ 0.09
CNOT4-212ENST00000541284 ABCC8Q09428 1581 aa15.53■□□□□ 0.08
CNOT4-212ENST00000541284 SYNJ1O43426 1573 aa15.52■□□□□ 0.08
CNOT4-212ENST00000541284 BAZ1BQ9UIG0 1483 aaKnown RBP15.52■□□□□ 0.07
CNOT4-212ENST00000541284 PPARGC1BQ86YN6 1023 aaKnown RBP15.51■□□□□ 0.07
CNOT4-212ENST00000541284 TOP2BQ02880 1626 aa15.48■□□□□ 0.07
CNOT4-212ENST00000541284 TRIM26Q12899 539 aaPredicted RBP15.44■□□□□ 0.06
CNOT4-212ENST00000541284 CC2D2AQ9P2K1 1620 aa15.43■□□□□ 0.06
CNOT4-212ENST00000541284 PABPN1Q86U42 306 aaKnown RBP eCLIP15.43■□□□□ 0.06
CNOT4-212ENST00000541284 TRIM41Q8WV44 630 aa15.41■□□□□ 0.06
CNOT4-212ENST00000541284 CFTRP13569 1480 aa15.38■□□□□ 0.05
CNOT4-212ENST00000541284 KIF21BO75037 1637 aa15.36■□□□□ 0.05
CNOT4-212ENST00000541284 WDR97A6NE52 1622 aa15.29■□□□□ 0.04
CNOT4-212ENST00000541284 CUX1P39880 1505 aa15.28■□□□□ 0.04
CNOT4-212ENST00000541284 FAM9AQ8IZU1 332 aaPredicted RBP15.25■□□□□ 0.03
CNOT4-212ENST00000541284 EEA1Q15075 1411 aa15.24■□□□□ 0.03
CNOT4-212ENST00000541284 WRNQ14191 1432 aaPredicted RBP eCLIP15.23■□□□□ 0.03
CNOT4-212ENST00000541284 RUSC2Q8N2Y8 1516 aa15.19■□□□□ 0.02
CNOT4-212ENST00000541284 SOGA1O94964 1423 aa15.17■□□□□ 0.02
CNOT4-212ENST00000541284 ERICH3Q5RHP9 1530 aa15.14■□□□□ 0.01
CNOT4-212ENST00000541284 LAMC3Q9Y6N6 1575 aa15.13■□□□□ 0.01
CNOT4-212ENST00000541284 PRXQ9BXM0 1461 aa15.07■□□□□ 0
CNOT4-212ENST00000541284 EHMT2Q96KQ7 1210 aa15.06■□□□□ 0
CNOT4-212ENST00000541284 ZEB1P37275 1124 aaPredicted RBP15.06■□□□□ 0
CNOT4-212ENST00000541284 DNMBPQ6XZF7 1577 aa15.05■□□□□ -0
CNOT4-212ENST00000541284 KIF21AQ7Z4S6 1674 aa15.05■□□□□ -0
CNOT4-212ENST00000541284 CADPSQ9ULU8 1353 aa15.02■□□□□ -0
CNOT4-212ENST00000541284 ABCA5Q8WWZ7 1642 aa15□□□□□ -0.01
CNOT4-212ENST00000541284 TNIKQ9UKE5 1360 aa15□□□□□ -0.01
CNOT4-212ENST00000541284 GOLGA3Q08378 1498 aa14.98□□□□□ -0.01
CNOT4-212ENST00000541284 CEP164Q9UPV0 1460 aa14.98□□□□□ -0.01
CNOT4-212ENST00000541284 TARBP1Q13395 1621 aaKnown RBP14.96□□□□□ -0.02
CNOT4-212ENST00000541284 CEP162Q5TB80 1403 aa14.92□□□□□ -0.02
CNOT4-212ENST00000541284 ABCA10Q8WWZ4 1543 aa14.91□□□□□ -0.02
CNOT4-212ENST00000541284 RAPGEF2Q9Y4G8 1499 aa14.91□□□□□ -0.02
CNOT4-212ENST00000541284 FANCD2Q9BXW9 1451 aa14.9□□□□□ -0.02
CNOT4-212ENST00000541284 CUL7Q14999 1698 aa14.9□□□□□ -0.02
CNOT4-212ENST00000541284 TOPBP1Q92547 1522 aa14.9□□□□□ -0.02
CNOT4-212ENST00000541284 URB2Q14146 1524 aaKnown RBP14.89□□□□□ -0.03
CNOT4-212ENST00000541284 CTTNBP2Q8WZ74 1663 aa14.89□□□□□ -0.03
CNOT4-212ENST00000541284 FGD5Q6ZNL6 1462 aa14.88□□□□□ -0.03
CNOT4-212ENST00000541284 NESP48681 1621 aa14.87□□□□□ -0.03
CNOT4-212ENST00000541284 PBRM1Q86U86 1689 aa14.84□□□□□ -0.03
CNOT4-212ENST00000541284 POLA1P09884 1462 aaPredicted RBP14.83□□□□□ -0.04
CNOT4-212ENST00000541284 ARAP1Q96P48 1450 aa14.81□□□□□ -0.04
CNOT4-212ENST00000541284 THOC2Q8NI27 1593 aaKnown RBP14.81□□□□□ -0.04
CNOT4-212ENST00000541284 WDR62O43379 1518 aa14.8□□□□□ -0.04
CNOT4-212ENST00000541284 CSRNP3Q8WYN3 585 aa14.79□□□□□ -0.04
CNOT4-212ENST00000541284 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.79□□□□□ -0.04
CNOT4-212ENST00000541284 LRRIQ1Q96JM4 1722 aa14.78□□□□□ -0.04
CNOT4-212ENST00000541284 CFAP43Q8NDM7 1665 aa14.77□□□□□ -0.05
CNOT4-212ENST00000541284 SAMD9Q5K651 1589 aa14.76□□□□□ -0.05
CNOT4-212ENST00000541284 KIF27Q86VH2 1401 aa14.74□□□□□ -0.05
CNOT4-212ENST00000541284 IGF1RP08069 1367 aa14.71□□□□□ -0.05
CNOT4-212ENST00000541284 MAP3K1Q13233 1512 aa14.71□□□□□ -0.05
CNOT4-212ENST00000541284 VPS8Q8N3P4 1428 aa14.69□□□□□ -0.06
CNOT4-212ENST00000541284 ARHGAP35Q9NRY4 1499 aa14.68□□□□□ -0.06
CNOT4-212ENST00000541284 SCAF1Q9H7N4 1312 aaKnown RBP14.67□□□□□ -0.06
CNOT4-212ENST00000541284 CUX2O14529 1486 aa14.67□□□□□ -0.06
CNOT4-212ENST00000541284 CCER1Q8TC90 406 aaPredicted RBP14.67□□□□□ -0.06
CNOT4-212ENST00000541284 CLIP1P30622 1438 aa14.66□□□□□ -0.06
CNOT4-212ENST00000541284 ADAMTS12P58397 1594 aa14.66□□□□□ -0.06
CNOT4-212ENST00000541284 DNAJC5BQ9UF47 199 aa14.64□□□□□ -0.07
CNOT4-212ENST00000541284 RAD54L2Q9Y4B4 1467 aa14.63□□□□□ -0.07
CNOT4-212ENST00000541284 EFCAB5A4FU69 1503 aa14.62□□□□□ -0.07
CNOT4-212ENST00000541284 UBTFP17480 764 aaKnown RBP14.62□□□□□ -0.07
CNOT4-212ENST00000541284 TTBK1Q5TCY1 1321 aaPredicted RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms