RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 NISCHQ9Y2I1 1504 aa27.8■■■□□ 2.04
AP003559.1-201ENST00000540906 CCDC180Q9P1Z9 1646 aa24.14■■□□□ 1.45
AP003559.1-201ENST00000540906 ZCCHC6Q5VYS8 1495 aaKnown RBP23.37■■□□□ 1.33
AP003559.1-201ENST00000540906 DCAF8L2P0C7V8 631 aa22.96■■□□□ 1.27
AP003559.1-201ENST00000540906 ABCC9O60706 1549 aa22.91■■□□□ 1.26
AP003559.1-201ENST00000540906 DCAF1Q9Y4B6 1507 aa22.89■■□□□ 1.26
AP003559.1-201ENST00000540906 SHROOM4Q9ULL8 1493 aa22.86■■□□□ 1.25
AP003559.1-201ENST00000540906 MYO15BQ96JP2 1530 aa22.56■■□□□ 1.2
AP003559.1-201ENST00000540906 NACADO15069 1562 aa22.44■■□□□ 1.18
AP003559.1-201ENST00000540906 SCRIBQ14160 1630 aa22.34■■□□□ 1.17
AP003559.1-201ENST00000540906 RB1CC1Q8TDY2 1594 aa22.24■■□□□ 1.15
AP003559.1-201ENST00000540906 SUPT5HO00267 1087 aaKnown RBP21.97■■□□□ 1.11
AP003559.1-201ENST00000540906 UNC13AQ9UPW8 1703 aa21.95■■□□□ 1.1
AP003559.1-201ENST00000540906 BICRAQ9NZM4 1560 aa21.71■■□□□ 1.07
AP003559.1-201ENST00000540906 CECR2Q9BXF3 1484 aa21.7■■□□□ 1.06
AP003559.1-201ENST00000540906 PABPN1Q86U42 306 aaKnown RBP eCLIP21.63■■□□□ 1.05
AP003559.1-201ENST00000540906 RSF1Q96T23 1441 aaPredicted RBP21.63■■□□□ 1.05
AP003559.1-201ENST00000540906 MROH2BQ7Z745 1585 aa21.55■■□□□ 1.04
AP003559.1-201ENST00000540906 BAZ1AQ9NRL2 1556 aaPredicted RBP21.4■■□□□ 1.02
AP003559.1-201ENST00000540906 WIZO95785 1651 aa21.39■■□□□ 1.02
AP003559.1-201ENST00000540906 SMARCA4P51532 1647 aa21.37■■□□□ 1.01
AP003559.1-201ENST00000540906 TOP2AP11388 1531 aaKnown RBP21.09■□□□□ 0.97
AP003559.1-201ENST00000540906 CHIC1Q5VXU3 224 aa21.06■□□□□ 0.96
AP003559.1-201ENST00000540906 PEG3Q9GZU2 1588 aa21.04■□□□□ 0.96
AP003559.1-201ENST00000540906 EIF4G1Q04637 1599 aaKnown RBP20.99■□□□□ 0.95
AP003559.1-201ENST00000540906 ATAD2BQ9ULI0 1458 aa20.99■□□□□ 0.95
AP003559.1-201ENST00000540906 SMARCA2P51531 1590 aa20.94■□□□□ 0.94
AP003559.1-201ENST00000540906 CCDC88BA6NC98 1476 aa20.91■□□□□ 0.94
AP003559.1-201ENST00000540906 BAZ1BQ9UIG0 1483 aaKnown RBP20.84■□□□□ 0.93
AP003559.1-201ENST00000540906 DNAJC5BQ9UF47 199 aa20.76■□□□□ 0.91
AP003559.1-201ENST00000540906 NCAPD3P42695 1498 aa20.74■□□□□ 0.91
AP003559.1-201ENST00000540906 HMGXB3Q12766 1538 aa20.71■□□□□ 0.91
AP003559.1-201ENST00000540906 CC2D2AQ9P2K1 1620 aa20.68■□□□□ 0.9
AP003559.1-201ENST00000540906 ABCC8Q09428 1581 aa20.56■□□□□ 0.88
AP003559.1-201ENST00000540906 TRIM41Q8WV44 630 aa20.56■□□□□ 0.88
AP003559.1-201ENST00000540906 LOC105371045A0A1W2PR82 267 aa20.34■□□□□ 0.85
AP003559.1-201ENST00000540906 CFTRP13569 1480 aa20.33■□□□□ 0.84
AP003559.1-201ENST00000540906 FAM9AQ8IZU1 332 aaPredicted RBP20.32■□□□□ 0.84
AP003559.1-201ENST00000540906 SYNJ1O43426 1573 aa20.31■□□□□ 0.84
AP003559.1-201ENST00000540906 WRNQ14191 1432 aaPredicted RBP eCLIP20.31■□□□□ 0.84
AP003559.1-201ENST00000540906 CADPSQ9ULU8 1353 aa20.23■□□□□ 0.83
AP003559.1-201ENST00000540906 PRDM2Q13029 1718 aa20.22■□□□□ 0.83
AP003559.1-201ENST00000540906 SOGA1O94964 1423 aa20.18■□□□□ 0.82
AP003559.1-201ENST00000540906 NESP48681 1621 aa20.17■□□□□ 0.82
AP003559.1-201ENST00000540906 RUSC2Q8N2Y8 1516 aa20.15■□□□□ 0.82
AP003559.1-201ENST00000540906 TOP2BQ02880 1626 aa20.14■□□□□ 0.81
AP003559.1-201ENST00000540906 CUX1P39880 1505 aa20.13■□□□□ 0.81
AP003559.1-201ENST00000540906 BIVM-ERCC5R4GMW8 1640 aa20.13■□□□□ 0.81
AP003559.1-201ENST00000540906 EHMT2Q96KQ7 1210 aa20.1■□□□□ 0.81
AP003559.1-201ENST00000540906 FANCD2Q9BXW9 1451 aa20.03■□□□□ 0.8
AP003559.1-201ENST00000540906 LAMC3Q9Y6N6 1575 aa20■□□□□ 0.79
AP003559.1-201ENST00000540906 EEA1Q15075 1411 aa19.95■□□□□ 0.78
AP003559.1-201ENST00000540906 CSRNP3Q8WYN3 585 aa19.92■□□□□ 0.78
AP003559.1-201ENST00000540906 KIF21AQ7Z4S6 1674 aa19.88■□□□□ 0.77
AP003559.1-201ENST00000540906 FGD5Q6ZNL6 1462 aa19.87■□□□□ 0.77
AP003559.1-201ENST00000540906 CEP164Q9UPV0 1460 aa19.86■□□□□ 0.77
AP003559.1-201ENST00000540906 DNMBPQ6XZF7 1577 aa19.85■□□□□ 0.77
AP003559.1-201ENST00000540906 TOPBP1Q92547 1522 aa19.84■□□□□ 0.77
AP003559.1-201ENST00000540906 URB2Q14146 1524 aaKnown RBP19.84■□□□□ 0.77
AP003559.1-201ENST00000540906 PDS5BQ9NTI5 1447 aa19.82■□□□□ 0.76
AP003559.1-201ENST00000540906 KIF21BO75037 1637 aa19.78■□□□□ 0.76
AP003559.1-201ENST00000540906 GOLGA3Q08378 1498 aa19.77■□□□□ 0.75
AP003559.1-201ENST00000540906 POLA1P09884 1462 aaPredicted RBP19.76■□□□□ 0.75
AP003559.1-201ENST00000540906 RAD54L2Q9Y4B4 1467 aa19.75■□□□□ 0.75
AP003559.1-201ENST00000540906 CUX2O14529 1486 aa19.74■□□□□ 0.75
AP003559.1-201ENST00000540906 RAPGEF2Q9Y4G8 1499 aa19.74■□□□□ 0.75
AP003559.1-201ENST00000540906 KIF27Q86VH2 1401 aa19.74■□□□□ 0.75
AP003559.1-201ENST00000540906 TNIKQ9UKE5 1360 aa19.71■□□□□ 0.75
AP003559.1-201ENST00000540906 AEBP2Q6ZN18 517 aaPredicted RBP19.69■□□□□ 0.74
AP003559.1-201ENST00000540906 ERCC6Q03468 1493 aa19.69■□□□□ 0.74
AP003559.1-201ENST00000540906 PRXQ9BXM0 1461 aa19.69■□□□□ 0.74
AP003559.1-201ENST00000540906 UBTFP17480 764 aaKnown RBP19.68■□□□□ 0.74
AP003559.1-201ENST00000540906 CEP162Q5TB80 1403 aa19.67■□□□□ 0.74
AP003559.1-201ENST00000540906 ABCA10Q8WWZ4 1543 aa19.66■□□□□ 0.74
AP003559.1-201ENST00000540906 WDR97A6NE52 1622 aa19.64■□□□□ 0.73
AP003559.1-201ENST00000540906 IGF1RP08069 1367 aa19.63■□□□□ 0.73
AP003559.1-201ENST00000540906 MRC2Q9UBG0 1479 aa19.63■□□□□ 0.73
AP003559.1-201ENST00000540906 ERICH3Q5RHP9 1530 aa19.61■□□□□ 0.73
AP003559.1-201ENST00000540906 TARBP1Q13395 1621 aaKnown RBP19.56■□□□□ 0.72
AP003559.1-201ENST00000540906 WDR62O43379 1518 aa19.53■□□□□ 0.72
AP003559.1-201ENST00000540906 TDRD9Q8NDG6 1382 aaKnown RBP19.53■□□□□ 0.72
AP003559.1-201ENST00000540906 ABCA5Q8WWZ7 1642 aa19.53■□□□□ 0.72
AP003559.1-201ENST00000540906 THOC2Q8NI27 1593 aaKnown RBP19.51■□□□□ 0.71
AP003559.1-201ENST00000540906 CARMIL1Q5VZK9 1371 aa19.5■□□□□ 0.71
AP003559.1-201ENST00000540906 CLIP1P30622 1438 aa19.48■□□□□ 0.71
AP003559.1-201ENST00000540906 RANGAP1P46060 587 aaPredicted RBP19.46■□□□□ 0.71
AP003559.1-201ENST00000540906 GAPVD1Q14C86 1478 aa19.45■□□□□ 0.7
AP003559.1-201ENST00000540906 PPARGC1BQ86YN6 1023 aaKnown RBP19.42■□□□□ 0.7
AP003559.1-201ENST00000540906 PCGF6Q9BYE7 350 aa19.42■□□□□ 0.7
AP003559.1-201ENST00000540906 CUL7Q14999 1698 aa19.41■□□□□ 0.7
AP003559.1-201ENST00000540906 AQRO60306 1485 aaKnown RBP eCLIP19.4■□□□□ 0.7
AP003559.1-201ENST00000540906 ZNF608Q9ULD9 1512 aaPredicted RBP19.39■□□□□ 0.69
AP003559.1-201ENST00000540906 PBRM1Q86U86 1689 aa19.37■□□□□ 0.69
AP003559.1-201ENST00000540906 IFT140Q96RY7 1462 aa19.37■□□□□ 0.69
AP003559.1-201ENST00000540906 ARAP1Q96P48 1450 aa19.35■□□□□ 0.69
AP003559.1-201ENST00000540906 VPS8Q8N3P4 1428 aa19.31■□□□□ 0.68
AP003559.1-201ENST00000540906 ARHGAP35Q9NRY4 1499 aa19.31■□□□□ 0.68
AP003559.1-201ENST00000540906 TRIM26Q12899 539 aaPredicted RBP19.3■□□□□ 0.68
AP003559.1-201ENST00000540906 EIF4G3O43432 1585 aaKnown RBP19.28■□□□□ 0.68
AP003559.1-201ENST00000540906 ADAMTS12P58397 1594 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms