RNA–Protein interactions for RNA: ENST00000540664.6

LCOR-209, Transcript of ligand dependent nuclear receptor corepressor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LCOR, Length 2,213 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LCOR-209ENST00000540664 NISCHQ9Y2I1 1504 aa20.9■□□□□ 0.94
LCOR-209ENST00000540664 CCDC180Q9P1Z9 1646 aa18.05■□□□□ 0.48
LCOR-209ENST00000540664 ZCCHC6Q5VYS8 1495 aaKnown RBP17.64■□□□□ 0.42
LCOR-209ENST00000540664 DCAF1Q9Y4B6 1507 aa17.3■□□□□ 0.36
LCOR-209ENST00000540664 SHROOM4Q9ULL8 1493 aa17.25■□□□□ 0.35
LCOR-209ENST00000540664 DCAF8L2P0C7V8 631 aa17.06■□□□□ 0.32
LCOR-209ENST00000540664 MYO15BQ96JP2 1530 aa16.95■□□□□ 0.3
LCOR-209ENST00000540664 ABCC9O60706 1549 aa16.89■□□□□ 0.29
LCOR-209ENST00000540664 SUPT5HO00267 1087 aaKnown RBP16.76■□□□□ 0.27
LCOR-209ENST00000540664 NACADO15069 1562 aa16.72■□□□□ 0.27
LCOR-209ENST00000540664 SCRIBQ14160 1630 aa16.63■□□□□ 0.25
LCOR-209ENST00000540664 RB1CC1Q8TDY2 1594 aa16.54■□□□□ 0.24
LCOR-209ENST00000540664 RSF1Q96T23 1441 aaPredicted RBP16.36■□□□□ 0.21
LCOR-209ENST00000540664 CHIC1Q5VXU3 224 aa16.3■□□□□ 0.2
LCOR-209ENST00000540664 UNC13AQ9UPW8 1703 aa16.28■□□□□ 0.2
LCOR-209ENST00000540664 CECR2Q9BXF3 1484 aa16.21■□□□□ 0.19
LCOR-209ENST00000540664 MROH2BQ7Z745 1585 aa16.17■□□□□ 0.18
LCOR-209ENST00000540664 BAZ1AQ9NRL2 1556 aaPredicted RBP16.09■□□□□ 0.17
LCOR-209ENST00000540664 AEBP2Q6ZN18 517 aaPredicted RBP16.09■□□□□ 0.17
LCOR-209ENST00000540664 BICRAQ9NZM4 1560 aa16.07■□□□□ 0.16
LCOR-209ENST00000540664 WIZO95785 1651 aa16.05■□□□□ 0.16
LCOR-209ENST00000540664 SMARCA4P51532 1647 aa15.99■□□□□ 0.15
LCOR-209ENST00000540664 PABPN1Q86U42 306 aaKnown RBP eCLIP15.95■□□□□ 0.14
LCOR-209ENST00000540664 TOP2AP11388 1531 aaKnown RBP15.89■□□□□ 0.13
LCOR-209ENST00000540664 EIF4G1Q04637 1599 aaKnown RBP15.83■□□□□ 0.13
LCOR-209ENST00000540664 PEG3Q9GZU2 1588 aa15.8■□□□□ 0.12
LCOR-209ENST00000540664 SMARCA2P51531 1590 aa15.76■□□□□ 0.11
LCOR-209ENST00000540664 TRIM41Q8WV44 630 aa15.74■□□□□ 0.11
LCOR-209ENST00000540664 CCDC88BA6NC98 1476 aa15.73■□□□□ 0.11
LCOR-209ENST00000540664 LOC105371045A0A1W2PR82 267 aa15.67■□□□□ 0.1
LCOR-209ENST00000540664 ATAD2BQ9ULI0 1458 aa15.63■□□□□ 0.09
LCOR-209ENST00000540664 BAZ1BQ9UIG0 1483 aaKnown RBP15.53■□□□□ 0.08
LCOR-209ENST00000540664 ABCC8Q09428 1581 aa15.52■□□□□ 0.07
LCOR-209ENST00000540664 FAM9AQ8IZU1 332 aaPredicted RBP15.45■□□□□ 0.06
LCOR-209ENST00000540664 HMGXB3Q12766 1538 aa15.45■□□□□ 0.06
LCOR-209ENST00000540664 NCAPD3P42695 1498 aa15.43■□□□□ 0.06
LCOR-209ENST00000540664 WRNQ14191 1432 aaPredicted RBP eCLIP15.36■□□□□ 0.05
LCOR-209ENST00000540664 EEA1Q15075 1411 aa15.34■□□□□ 0.05
LCOR-209ENST00000540664 PCGF6Q9BYE7 350 aa15.32■□□□□ 0.04
LCOR-209ENST00000540664 SYNJ1O43426 1573 aa15.31■□□□□ 0.04
LCOR-209ENST00000540664 SOGA1O94964 1423 aa15.3■□□□□ 0.04
LCOR-209ENST00000540664 CC2D2AQ9P2K1 1620 aa15.29■□□□□ 0.04
LCOR-209ENST00000540664 TRIM26Q12899 539 aaPredicted RBP15.24■□□□□ 0.03
LCOR-209ENST00000540664 RUSC2Q8N2Y8 1516 aa15.24■□□□□ 0.03
LCOR-209ENST00000540664 HRCP23327 699 aa15.22■□□□□ 0.03
LCOR-209ENST00000540664 TOP2BQ02880 1626 aa15.22■□□□□ 0.03
LCOR-209ENST00000540664 BIVM-ERCC5R4GMW8 1640 aa15.21■□□□□ 0.02
LCOR-209ENST00000540664 CSRNP3Q8WYN3 585 aa15.2■□□□□ 0.02
LCOR-209ENST00000540664 EHMT2Q96KQ7 1210 aa15.2■□□□□ 0.02
LCOR-209ENST00000540664 CFTRP13569 1480 aa15.19■□□□□ 0.02
LCOR-209ENST00000540664 TNIKQ9UKE5 1360 aa15.17■□□□□ 0.02
LCOR-209ENST00000540664 PRDM2Q13029 1718 aa15.15■□□□□ 0.02
LCOR-209ENST00000540664 KIF21BO75037 1637 aa15.14■□□□□ 0.01
LCOR-209ENST00000540664 GOLGA3Q08378 1498 aa15.14■□□□□ 0.01
LCOR-209ENST00000540664 CEP162Q5TB80 1403 aa15.11■□□□□ 0.01
LCOR-209ENST00000540664 CEP164Q9UPV0 1460 aa15.1■□□□□ 0.01
LCOR-209ENST00000540664 CUX1P39880 1505 aa15.09■□□□□ 0.01
LCOR-209ENST00000540664 CADPSQ9ULU8 1353 aa15.04■□□□□ -0
LCOR-209ENST00000540664 POTEDQ86YR6 584 aa15.02■□□□□ -0
LCOR-209ENST00000540664 UBTFP17480 764 aaKnown RBP14.99□□□□□ -0.01
LCOR-209ENST00000540664 RAPGEF2Q9Y4G8 1499 aa14.97□□□□□ -0.01
LCOR-209ENST00000540664 ERICH3Q5RHP9 1530 aa14.97□□□□□ -0.01
LCOR-209ENST00000540664 PRXQ9BXM0 1461 aa14.96□□□□□ -0.01
LCOR-209ENST00000540664 KIF27Q86VH2 1401 aa14.93□□□□□ -0.02
LCOR-209ENST00000540664 CLIP1P30622 1438 aa14.9□□□□□ -0.02
LCOR-209ENST00000540664 FANCD2Q9BXW9 1451 aa14.89□□□□□ -0.03
LCOR-209ENST00000540664 NESP48681 1621 aa14.89□□□□□ -0.03
LCOR-209ENST00000540664 LAMC3Q9Y6N6 1575 aa14.88□□□□□ -0.03
LCOR-209ENST00000540664 PPARGC1BQ86YN6 1023 aaKnown RBP14.87□□□□□ -0.03
LCOR-209ENST00000540664 DNAJC5BQ9UF47 199 aa14.85□□□□□ -0.03
LCOR-209ENST00000540664 FGD5Q6ZNL6 1462 aa14.85□□□□□ -0.03
LCOR-209ENST00000540664 VPS8Q8N3P4 1428 aa14.84□□□□□ -0.03
LCOR-209ENST00000540664 DNMBPQ6XZF7 1577 aa14.83□□□□□ -0.04
LCOR-209ENST00000540664 ZEB1P37275 1124 aaPredicted RBP14.81□□□□□ -0.04
LCOR-209ENST00000540664 CUX2O14529 1486 aa14.8□□□□□ -0.04
LCOR-209ENST00000540664 IGF1RP08069 1367 aa14.78□□□□□ -0.04
LCOR-209ENST00000540664 TOPBP1Q92547 1522 aa14.77□□□□□ -0.04
LCOR-209ENST00000540664 ARAP1Q96P48 1450 aa14.75□□□□□ -0.05
LCOR-209ENST00000540664 PDS5BQ9NTI5 1447 aa14.75□□□□□ -0.05
LCOR-209ENST00000540664 ABCA10Q8WWZ4 1543 aa14.74□□□□□ -0.05
LCOR-209ENST00000540664 KIF21AQ7Z4S6 1674 aa14.73□□□□□ -0.05
LCOR-209ENST00000540664 POLA1P09884 1462 aaPredicted RBP14.73□□□□□ -0.05
LCOR-209ENST00000540664 URB2Q14146 1524 aaKnown RBP14.71□□□□□ -0.05
LCOR-209ENST00000540664 CARMIL1Q5VZK9 1371 aa14.69□□□□□ -0.06
LCOR-209ENST00000540664 WDR97A6NE52 1622 aa14.68□□□□□ -0.06
LCOR-209ENST00000540664 RAD54L2Q9Y4B4 1467 aa14.68□□□□□ -0.06
LCOR-209ENST00000540664 ARHGAP35Q9NRY4 1499 aa14.67□□□□□ -0.06
LCOR-209ENST00000540664 TTBK1Q5TCY1 1321 aaPredicted RBP14.65□□□□□ -0.06
LCOR-209ENST00000540664 CUL7Q14999 1698 aa14.63□□□□□ -0.07
LCOR-209ENST00000540664 RANGAP1P46060 587 aaPredicted RBP14.62□□□□□ -0.07
LCOR-209ENST00000540664 APLP2Q06481 763 aa14.61□□□□□ -0.07
LCOR-209ENST00000540664 ABCA5Q8WWZ7 1642 aa14.6□□□□□ -0.07
LCOR-209ENST00000540664 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.58□□□□□ -0.07
LCOR-209ENST00000540664 MRC2Q9UBG0 1479 aa14.57□□□□□ -0.08
LCOR-209ENST00000540664 TARBP1Q13395 1621 aaKnown RBP14.54□□□□□ -0.08
LCOR-209ENST00000540664 CCER1Q8TC90 406 aaPredicted RBP14.54□□□□□ -0.08
LCOR-209ENST00000540664 MAP3K1Q13233 1512 aa14.54□□□□□ -0.08
LCOR-209ENST00000540664 CTTNBP2Q8WZ74 1663 aa14.53□□□□□ -0.08
LCOR-209ENST00000540664 GAPVD1Q14C86 1478 aa14.51□□□□□ -0.09
LCOR-209ENST00000540664 EFCAB5A4FU69 1503 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms