RNA–Protein interactions for RNA: ENST00000540415.1

LRP6-204, Transcript of LDL receptor related protein 6, humanhuman

TSL 5

Gene LRP6, Length 473 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-204ENST00000540415 NISCHQ9Y2I1 1504 aa20.63■□□□□ 0.89
LRP6-204ENST00000540415 ABCC9O60706 1549 aa19.12■□□□□ 0.65
LRP6-204ENST00000540415 CCDC180Q9P1Z9 1646 aa18.57■□□□□ 0.56
LRP6-204ENST00000540415 DNAJC5BQ9UF47 199 aa18.36■□□□□ 0.53
LRP6-204ENST00000540415 RB1CC1Q8TDY2 1594 aa17.91■□□□□ 0.46
LRP6-204ENST00000540415 PABPN1Q86U42 306 aaKnown RBP eCLIP17.79■□□□□ 0.44
LRP6-204ENST00000540415 NACADO15069 1562 aa17.69■□□□□ 0.42
LRP6-204ENST00000540415 DCAF8L2P0C7V8 631 aa17.66■□□□□ 0.42
LRP6-204ENST00000540415 UNC13AQ9UPW8 1703 aa17.49■□□□□ 0.39
LRP6-204ENST00000540415 BICRAQ9NZM4 1560 aa17.49■□□□□ 0.39
LRP6-204ENST00000540415 MYO15BQ96JP2 1530 aa17.29■□□□□ 0.36
LRP6-204ENST00000540415 CECR2Q9BXF3 1484 aa17.23■□□□□ 0.35
LRP6-204ENST00000540415 CC2D2AQ9P2K1 1620 aa17.19■□□□□ 0.34
LRP6-204ENST00000540415 SHROOM4Q9ULL8 1493 aa17.08■□□□□ 0.32
LRP6-204ENST00000540415 EIF4G1Q04637 1599 aaKnown RBP17.06■□□□□ 0.32
LRP6-204ENST00000540415 SCRIBQ14160 1630 aa17.03■□□□□ 0.32
LRP6-204ENST00000540415 DNAJC5Q9H3Z4 198 aa17.03■□□□□ 0.32
LRP6-204ENST00000540415 ZCCHC6Q5VYS8 1495 aaKnown RBP17.03■□□□□ 0.32
LRP6-204ENST00000540415 DCAF1Q9Y4B6 1507 aa16.96■□□□□ 0.3
LRP6-204ENST00000540415 CUX2O14529 1486 aa16.54■□□□□ 0.24
LRP6-204ENST00000540415 ERCC6Q03468 1493 aa16.48■□□□□ 0.23
LRP6-204ENST00000540415 NCAPD3P42695 1498 aa16.38■□□□□ 0.21
LRP6-204ENST00000540415 NESP48681 1621 aa16.34■□□□□ 0.21
LRP6-204ENST00000540415 ATAD2BQ9ULI0 1458 aa16.32■□□□□ 0.2
LRP6-204ENST00000540415 HMGXB3Q12766 1538 aa16.19■□□□□ 0.18
LRP6-204ENST00000540415 TRIM41Q8WV44 630 aa16.19■□□□□ 0.18
LRP6-204ENST00000540415 SMARCA2P51531 1590 aa16.17■□□□□ 0.18
LRP6-204ENST00000540415 THOC2Q8NI27 1593 aaKnown RBP16.17■□□□□ 0.18
LRP6-204ENST00000540415 SMARCA4P51532 1647 aa16.16■□□□□ 0.18
LRP6-204ENST00000540415 BAZ1BQ9UIG0 1483 aaKnown RBP16.11■□□□□ 0.17
LRP6-204ENST00000540415 LAMC3Q9Y6N6 1575 aa16.03■□□□□ 0.16
LRP6-204ENST00000540415 KIF21AQ7Z4S6 1674 aa16.01■□□□□ 0.15
LRP6-204ENST00000540415 BAZ1AQ9NRL2 1556 aaPredicted RBP16■□□□□ 0.15
LRP6-204ENST00000540415 PDS5BQ9NTI5 1447 aa15.98■□□□□ 0.15
LRP6-204ENST00000540415 PEG3Q9GZU2 1588 aa15.97■□□□□ 0.15
LRP6-204ENST00000540415 MROH2BQ7Z745 1585 aa15.95■□□□□ 0.14
LRP6-204ENST00000540415 MRC2Q9UBG0 1479 aa15.89■□□□□ 0.13
LRP6-204ENST00000540415 CADPSQ9ULU8 1353 aa15.88■□□□□ 0.13
LRP6-204ENST00000540415 WDR62O43379 1518 aa15.85■□□□□ 0.13
LRP6-204ENST00000540415 OSCARQ8IYS5 282 aa15.75■□□□□ 0.11
LRP6-204ENST00000540415 CEP164Q9UPV0 1460 aa15.74■□□□□ 0.11
LRP6-204ENST00000540415 FANCD2Q9BXW9 1451 aa15.71■□□□□ 0.11
LRP6-204ENST00000540415 WIZO95785 1651 aa15.7■□□□□ 0.1
LRP6-204ENST00000540415 URB2Q14146 1524 aaKnown RBP15.64■□□□□ 0.09
LRP6-204ENST00000540415 CFTRP13569 1480 aa15.62■□□□□ 0.09
LRP6-204ENST00000540415 RIMBP3CA6NJZ7 1639 aa15.6■□□□□ 0.09
LRP6-204ENST00000540415 RIMBP3BA6NNM3 1639 aa15.6■□□□□ 0.09
LRP6-204ENST00000540415 RIMBP3Q9UFD9 1639 aa15.6■□□□□ 0.09
LRP6-204ENST00000540415 ZNF608Q9ULD9 1512 aaPredicted RBP15.53■□□□□ 0.08
LRP6-204ENST00000540415 ARHGEF11O15085 1522 aa15.53■□□□□ 0.08
LRP6-204ENST00000540415 CYB5RLQ6IPT4 315 aa15.47■□□□□ 0.07
LRP6-204ENST00000540415 RSF1Q96T23 1441 aaPredicted RBP15.47■□□□□ 0.07
LRP6-204ENST00000540415 TOP2AP11388 1531 aaKnown RBP15.45■□□□□ 0.06
LRP6-204ENST00000540415 IFT140Q96RY7 1462 aa15.44■□□□□ 0.06
LRP6-204ENST00000540415 TRHP20396 242 aaPredicted RBP15.41■□□□□ 0.06
LRP6-204ENST00000540415 ARAP1Q96P48 1450 aa15.38■□□□□ 0.05
LRP6-204ENST00000540415 TOPBP1Q92547 1522 aa15.38■□□□□ 0.05
LRP6-204ENST00000540415 EIF4G3O43432 1585 aaKnown RBP15.36■□□□□ 0.05
LRP6-204ENST00000540415 CCDC88BA6NC98 1476 aa15.33■□□□□ 0.05
LRP6-204ENST00000540415 AQRO60306 1485 aaKnown RBP eCLIP15.33■□□□□ 0.05
LRP6-204ENST00000540415 FBLN2P98095 1184 aa15.31■□□□□ 0.04
LRP6-204ENST00000540415 CHD1O14646 1710 aa15.28■□□□□ 0.04
LRP6-204ENST00000540415 PRDM2Q13029 1718 aa15.28■□□□□ 0.04
LRP6-204ENST00000540415 TARBP1Q13395 1621 aaKnown RBP15.25■□□□□ 0.03
LRP6-204ENST00000540415 DNMBPQ6XZF7 1577 aa15.24■□□□□ 0.03
LRP6-204ENST00000540415 ABCC8Q09428 1581 aa15.21■□□□□ 0.03
LRP6-204ENST00000540415 POLA1P09884 1462 aaPredicted RBP15.2■□□□□ 0.02
LRP6-204ENST00000540415 RAD54L2Q9Y4B4 1467 aa15.2■□□□□ 0.02
LRP6-204ENST00000540415 AEBP2Q6ZN18 517 aaPredicted RBP15.2■□□□□ 0.02
LRP6-204ENST00000540415 TDRD9Q8NDG6 1382 aaKnown RBP15.19■□□□□ 0.02
LRP6-204ENST00000540415 SNAPC4Q5SXM2 1469 aa15.14■□□□□ 0.01
LRP6-204ENST00000540415 CLASP1Q7Z460 1538 aa15.14■□□□□ 0.01
LRP6-204ENST00000540415 SOGA1O94964 1423 aa15.12■□□□□ 0.01
LRP6-204ENST00000540415 CHMP7Q8WUX9 453 aaPredicted RBP15.09■□□□□ 0.01
LRP6-204ENST00000540415 FGD5Q6ZNL6 1462 aa15.05■□□□□ -0
LRP6-204ENST00000540415 SYNJ1O43426 1573 aa15.04■□□□□ -0
LRP6-204ENST00000540415 GAPVD1Q14C86 1478 aa15.02■□□□□ -0
LRP6-204ENST00000540415 MAGI1Q96QZ7 1491 aaPredicted RBP15.02■□□□□ -0
LRP6-204ENST00000540415 GRIN2BQ13224 1484 aa15.01□□□□□ -0.01
LRP6-204ENST00000540415 SYNJ2O15056 1496 aa15□□□□□ -0.01
LRP6-204ENST00000540415 CUX1P39880 1505 aa14.99□□□□□ -0.01
LRP6-204ENST00000540415 WDR97A6NE52 1622 aa14.95□□□□□ -0.02
LRP6-204ENST00000540415 ERCC6L2Q5T890 1561 aa14.95□□□□□ -0.02
LRP6-204ENST00000540415 PBRM1Q86U86 1689 aa14.87□□□□□ -0.03
LRP6-204ENST00000540415 ABCA5Q8WWZ7 1642 aa14.84□□□□□ -0.03
LRP6-204ENST00000540415 ABCA10Q8WWZ4 1543 aa14.83□□□□□ -0.04
LRP6-204ENST00000540415 GRIN2AQ12879 1464 aa14.82□□□□□ -0.04
LRP6-204ENST00000540415 CEP170Q5SW79 1584 aa14.82□□□□□ -0.04
LRP6-204ENST00000540415 NUP160Q12769 1436 aa14.8□□□□□ -0.04
LRP6-204ENST00000540415 ADAMTS12P58397 1594 aa14.77□□□□□ -0.05
LRP6-204ENST00000540415 SHROOM2Q13796 1616 aa14.73□□□□□ -0.05
LRP6-204ENST00000540415 KIF13AQ9H1H9 1805 aa14.72□□□□□ -0.05
LRP6-204ENST00000540415 FHAD1B1AJZ9 1412 aa14.71□□□□□ -0.05
LRP6-204ENST00000540415 PRG4Q92954 1404 aaPredicted RBP14.71□□□□□ -0.05
LRP6-204ENST00000540415 FAM69CQ0P6D2 419 aa14.7□□□□□ -0.06
LRP6-204ENST00000540415 WRNQ14191 1432 aaPredicted RBP eCLIP14.69□□□□□ -0.06
LRP6-204ENST00000540415 KDM4FA0A1W2PPD8 638 aa14.68□□□□□ -0.06
LRP6-204ENST00000540415 ABCC10Q5T3U5 1492 aa14.66□□□□□ -0.06
LRP6-204ENST00000540415 JPH4Q96JJ6 628 aa14.66□□□□□ -0.06
LRP6-204ENST00000540415 ILDR1Q86SU0 546 aaPredicted RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms