RNA–Protein interactions for RNA: ENST00000540060.1

LPCAT3-209, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 4

Gene LPCAT3, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-209ENST00000540060 AEBP2Q6ZN18 517 aaPredicted RBP19.38■□□□□ 0.69
LPCAT3-209ENST00000540060 CHIC1Q5VXU3 224 aa18.1■□□□□ 0.49
LPCAT3-209ENST00000540060 POTEDQ86YR6 584 aa17.43■□□□□ 0.38
LPCAT3-209ENST00000540060 NISCHQ9Y2I1 1504 aa16.96■□□□□ 0.31
LPCAT3-209ENST00000540060 SENP3Q9H4L4 574 aaPredicted RBP16.79■□□□□ 0.28
LPCAT3-209ENST00000540060 PHF23Q9BUL5 403 aaPredicted RBP16.35■□□□□ 0.21
LPCAT3-209ENST00000540060 FOXD1Q16676 465 aa15.79■□□□□ 0.12
LPCAT3-209ENST00000540060 MSH5O43196 834 aa15.37■□□□□ 0.05
LPCAT3-209ENST00000540060 CCDC180Q9P1Z9 1646 aa15.14■□□□□ 0.01
LPCAT3-209ENST00000540060 ABCC9O60706 1549 aa14.57□□□□□ -0.08
LPCAT3-209ENST00000540060 PIAS4Q8N2W9 510 aaPredicted RBP14.4□□□□□ -0.1
LPCAT3-209ENST00000540060 ZCCHC6Q5VYS8 1495 aaKnown RBP14.18□□□□□ -0.14
LPCAT3-209ENST00000540060 NACADO15069 1562 aa14.13□□□□□ -0.15
LPCAT3-209ENST00000540060 RB1CC1Q8TDY2 1594 aa14.13□□□□□ -0.15
LPCAT3-209ENST00000540060 MYO15BQ96JP2 1530 aa14.09□□□□□ -0.15
LPCAT3-209ENST00000540060 DCAF1Q9Y4B6 1507 aa14.07□□□□□ -0.16
LPCAT3-209ENST00000540060 CACNB1Q02641 598 aaPredicted RBP14.04□□□□□ -0.16
LPCAT3-209ENST00000540060 DCAF8L2P0C7V8 631 aa13.95□□□□□ -0.18
LPCAT3-209ENST00000540060 UNC13AQ9UPW8 1703 aa13.92□□□□□ -0.18
LPCAT3-209ENST00000540060 SCRIBQ14160 1630 aa13.76□□□□□ -0.21
LPCAT3-209ENST00000540060 BICRAQ9NZM4 1560 aa13.71□□□□□ -0.21
LPCAT3-209ENST00000540060 PPP6R1Q9UPN7 881 aa13.65□□□□□ -0.22
LPCAT3-209ENST00000540060 SHROOM4Q9ULL8 1493 aa13.58□□□□□ -0.24
LPCAT3-209ENST00000540060 PABPN1Q86U42 306 aaKnown RBP eCLIP13.55□□□□□ -0.24
LPCAT3-209ENST00000540060 ADRA2BP18089 450 aa13.5□□□□□ -0.25
LPCAT3-209ENST00000540060 POTEHQ6S545 545 aa13.37□□□□□ -0.27
LPCAT3-209ENST00000540060 EIF4G1Q04637 1599 aaKnown RBP13.32□□□□□ -0.28
LPCAT3-209ENST00000540060 CC2D2AQ9P2K1 1620 aa13.25□□□□□ -0.29
LPCAT3-209ENST00000540060 DNAJC5BQ9UF47 199 aa13.2□□□□□ -0.3
LPCAT3-209ENST00000540060 SMARCA4P51532 1647 aa13.19□□□□□ -0.3
LPCAT3-209ENST00000540060 CECR2Q9BXF3 1484 aa13.18□□□□□ -0.3
LPCAT3-209ENST00000540060 BAZ1AQ9NRL2 1556 aaPredicted RBP13.16□□□□□ -0.3
LPCAT3-209ENST00000540060 DMRT2Q9Y5R5 561 aa13.08□□□□□ -0.32
LPCAT3-209ENST00000540060 MROH2BQ7Z745 1585 aa13.07□□□□□ -0.32
LPCAT3-209ENST00000540060 PEG3Q9GZU2 1588 aa13.07□□□□□ -0.32
LPCAT3-209ENST00000540060 SMARCA2P51531 1590 aa13.04□□□□□ -0.32
LPCAT3-209ENST00000540060 ATAD2BQ9ULI0 1458 aa13.02□□□□□ -0.33
LPCAT3-209ENST00000540060 HMGXB3Q12766 1538 aa13.01□□□□□ -0.33
LPCAT3-209ENST00000540060 NCAPD3P42695 1498 aa12.99□□□□□ -0.33
LPCAT3-209ENST00000540060 RNF39Q9H2S5 420 aa12.98□□□□□ -0.33
LPCAT3-209ENST00000540060 WIZO95785 1651 aa12.98□□□□□ -0.33
LPCAT3-209ENST00000540060 PLPPR3Q6T4P5 718 aa12.96□□□□□ -0.33
LPCAT3-209ENST00000540060 BAZ1BQ9UIG0 1483 aaKnown RBP12.93□□□□□ -0.34
LPCAT3-209ENST00000540060 RSF1Q96T23 1441 aaPredicted RBP12.93□□□□□ -0.34
LPCAT3-209ENST00000540060 MAPK8IP2Q13387 824 aaPredicted RBP12.85□□□□□ -0.35
LPCAT3-209ENST00000540060 TOP2AP11388 1531 aaKnown RBP12.84□□□□□ -0.35
LPCAT3-209ENST00000540060 C1QBPQ07021 282 aaKnown RBP12.72□□□□□ -0.37
LPCAT3-209ENST00000540060 LAMC3Q9Y6N6 1575 aa12.69□□□□□ -0.38
LPCAT3-209ENST00000540060 NESP48681 1621 aa12.66□□□□□ -0.38
LPCAT3-209ENST00000540060 PRDM2Q13029 1718 aa12.66□□□□□ -0.38
LPCAT3-209ENST00000540060 CCDC88BA6NC98 1476 aa12.63□□□□□ -0.39
LPCAT3-209ENST00000540060 KIF21AQ7Z4S6 1674 aa12.61□□□□□ -0.39
LPCAT3-209ENST00000540060 CADPSQ9ULU8 1353 aa12.58□□□□□ -0.4
LPCAT3-209ENST00000540060 SUPT5HO00267 1087 aaKnown RBP12.58□□□□□ -0.4
LPCAT3-209ENST00000540060 CFTRP13569 1480 aa12.58□□□□□ -0.4
LPCAT3-209ENST00000540060 DCAF8L1A6NGE4 600 aa12.56□□□□□ -0.4
LPCAT3-209ENST00000540060 THOC2Q8NI27 1593 aaKnown RBP12.54□□□□□ -0.4
LPCAT3-209ENST00000540060 ERCC6Q03468 1493 aa12.53□□□□□ -0.4
LPCAT3-209ENST00000540060 PDS5BQ9NTI5 1447 aa12.52□□□□□ -0.41
LPCAT3-209ENST00000540060 FANCD2Q9BXW9 1451 aa12.47□□□□□ -0.41
LPCAT3-209ENST00000540060 CEP164Q9UPV0 1460 aa12.46□□□□□ -0.41
LPCAT3-209ENST00000540060 MRC2Q9UBG0 1479 aa12.43□□□□□ -0.42
LPCAT3-209ENST00000540060 WDR62O43379 1518 aa12.42□□□□□ -0.42
LPCAT3-209ENST00000540060 SCAF1Q9H7N4 1312 aaKnown RBP12.41□□□□□ -0.42
LPCAT3-209ENST00000540060 CUX2O14529 1486 aa12.4□□□□□ -0.42
LPCAT3-209ENST00000540060 URB2Q14146 1524 aaKnown RBP12.37□□□□□ -0.43
LPCAT3-209ENST00000540060 DNMBPQ6XZF7 1577 aa12.34□□□□□ -0.43
LPCAT3-209ENST00000540060 TOPBP1Q92547 1522 aa12.31□□□□□ -0.44
LPCAT3-209ENST00000540060 ABCC8Q09428 1581 aa12.29□□□□□ -0.44
LPCAT3-209ENST00000540060 CUX1P39880 1505 aa12.27□□□□□ -0.44
LPCAT3-209ENST00000540060 BIVM-ERCC5R4GMW8 1640 aa12.26□□□□□ -0.45
LPCAT3-209ENST00000540060 TOP2BQ02880 1626 aa12.22□□□□□ -0.45
LPCAT3-209ENST00000540060 TARBP1Q13395 1621 aaKnown RBP12.22□□□□□ -0.45
LPCAT3-209ENST00000540060 SYNJ1O43426 1573 aa12.22□□□□□ -0.45
LPCAT3-209ENST00000540060 POLA1P09884 1462 aaPredicted RBP12.21□□□□□ -0.45
LPCAT3-209ENST00000540060 WDR97A6NE52 1622 aa12.21□□□□□ -0.46
LPCAT3-209ENST00000540060 FGD5Q6ZNL6 1462 aa12.2□□□□□ -0.46
LPCAT3-209ENST00000540060 IFT140Q96RY7 1462 aa12.19□□□□□ -0.46
LPCAT3-209ENST00000540060 WRNQ14191 1432 aaPredicted RBP eCLIP12.19□□□□□ -0.46
LPCAT3-209ENST00000540060 EIF4G3O43432 1585 aaKnown RBP12.17□□□□□ -0.46
LPCAT3-209ENST00000540060 RAD54L2Q9Y4B4 1467 aa12.13□□□□□ -0.47
LPCAT3-209ENST00000540060 ZNF608Q9ULD9 1512 aaPredicted RBP12.12□□□□□ -0.47
LPCAT3-209ENST00000540060 ABCA5Q8WWZ7 1642 aa12.1□□□□□ -0.47
LPCAT3-209ENST00000540060 SOGA1O94964 1423 aa12.1□□□□□ -0.47
LPCAT3-209ENST00000540060 PBRM1Q86U86 1689 aa12.1□□□□□ -0.47
LPCAT3-209ENST00000540060 ABCA10Q8WWZ4 1543 aa12.09□□□□□ -0.47
LPCAT3-209ENST00000540060 HOXD11P31277 338 aaPredicted RBP12.05□□□□□ -0.48
LPCAT3-209ENST00000540060 AQRO60306 1485 aaKnown RBP eCLIP12.03□□□□□ -0.481e-7■■■■■ 32.3
LPCAT3-209ENST00000540060 CHD1O14646 1710 aa12.02□□□□□ -0.49
LPCAT3-209ENST00000540060 TDRD9Q8NDG6 1382 aaKnown RBP12.01□□□□□ -0.49
LPCAT3-209ENST00000540060 GAPVD1Q14C86 1478 aa12□□□□□ -0.49
LPCAT3-209ENST00000540060 GRIN2BQ13224 1484 aa11.99□□□□□ -0.49
LPCAT3-209ENST00000540060 SNAPC4Q5SXM2 1469 aa11.97□□□□□ -0.49
LPCAT3-209ENST00000540060 DNAJC5Q9H3Z4 198 aa11.97□□□□□ -0.49
LPCAT3-209ENST00000540060 ADAMTS12P58397 1594 aa11.96□□□□□ -0.49
LPCAT3-209ENST00000540060 MAGI1Q96QZ7 1491 aaPredicted RBP11.96□□□□□ -0.49
LPCAT3-209ENST00000540060 ERICH3Q5RHP9 1530 aa11.96□□□□□ -0.5
LPCAT3-209ENST00000540060 CUL7Q14999 1698 aa11.92□□□□□ -0.5
LPCAT3-209ENST00000540060 SYNJ2O15056 1496 aa11.91□□□□□ -0.5
LPCAT3-209ENST00000540060 KIF27Q86VH2 1401 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms