RNA–Protein interactions for RNA: ENST00000539631.1

TSPAN9-207, Transcript of tetraspanin 9, humanhuman

TSL 3

Gene TSPAN9, Length 584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN9-207ENST00000539631 NISCHQ9Y2I1 1504 aa30.57■■■□□ 2.49
TSPAN9-207ENST00000539631 CCDC180Q9P1Z9 1646 aa27.12■■□□□ 1.93
TSPAN9-207ENST00000539631 ABCC9O60706 1549 aa26.33■■□□□ 1.81
TSPAN9-207ENST00000539631 ZCCHC6Q5VYS8 1495 aaKnown RBP25.51■■□□□ 1.67
TSPAN9-207ENST00000539631 DCAF8L2P0C7V8 631 aa25.46■■□□□ 1.67
TSPAN9-207ENST00000539631 NACADO15069 1562 aa25.41■■□□□ 1.66
TSPAN9-207ENST00000539631 RB1CC1Q8TDY2 1594 aa25.4■■□□□ 1.66
TSPAN9-207ENST00000539631 MYO15BQ96JP2 1530 aa25.29■■□□□ 1.64
TSPAN9-207ENST00000539631 DCAF1Q9Y4B6 1507 aa25.28■■□□□ 1.64
TSPAN9-207ENST00000539631 UNC13AQ9UPW8 1703 aa24.94■■□□□ 1.58
TSPAN9-207ENST00000539631 SCRIBQ14160 1630 aa24.78■■□□□ 1.56
TSPAN9-207ENST00000539631 BICRAQ9NZM4 1560 aa24.66■■□□□ 1.54
TSPAN9-207ENST00000539631 PABPN1Q86U42 306 aaKnown RBP eCLIP24.63■■□□□ 1.53
TSPAN9-207ENST00000539631 SHROOM4Q9ULL8 1493 aa24.32■■□□□ 1.48
TSPAN9-207ENST00000539631 DNAJC5BQ9UF47 199 aa24.27■■□□□ 1.48
TSPAN9-207ENST00000539631 EIF4G1Q04637 1599 aaKnown RBP23.97■■□□□ 1.43
TSPAN9-207ENST00000539631 CC2D2AQ9P2K1 1620 aa23.84■■□□□ 1.41
TSPAN9-207ENST00000539631 CECR2Q9BXF3 1484 aa23.81■■□□□ 1.4
TSPAN9-207ENST00000539631 SMARCA4P51532 1647 aa23.7■■□□□ 1.39
TSPAN9-207ENST00000539631 BAZ1AQ9NRL2 1556 aaPredicted RBP23.68■■□□□ 1.38
TSPAN9-207ENST00000539631 MROH2BQ7Z745 1585 aa23.59■■□□□ 1.37
TSPAN9-207ENST00000539631 ATAD2BQ9ULI0 1458 aa23.49■■□□□ 1.35
TSPAN9-207ENST00000539631 SMARCA2P51531 1590 aa23.47■■□□□ 1.35
TSPAN9-207ENST00000539631 PEG3Q9GZU2 1588 aa23.44■■□□□ 1.34
TSPAN9-207ENST00000539631 NCAPD3P42695 1498 aa23.43■■□□□ 1.34
TSPAN9-207ENST00000539631 WIZO95785 1651 aa23.38■■□□□ 1.33
TSPAN9-207ENST00000539631 RSF1Q96T23 1441 aaPredicted RBP23.36■■□□□ 1.33
TSPAN9-207ENST00000539631 HMGXB3Q12766 1538 aa23.34■■□□□ 1.33
TSPAN9-207ENST00000539631 BAZ1BQ9UIG0 1483 aaKnown RBP23.31■■□□□ 1.32
TSPAN9-207ENST00000539631 DNAJC5Q9H3Z4 198 aa23.19■■□□□ 1.3
TSPAN9-207ENST00000539631 TOP2AP11388 1531 aaKnown RBP23.1■■□□□ 1.29
TSPAN9-207ENST00000539631 SUPT5HO00267 1087 aaKnown RBP22.94■■□□□ 1.26
TSPAN9-207ENST00000539631 NESP48681 1621 aa22.86■■□□□ 1.25
TSPAN9-207ENST00000539631 CCDC88BA6NC98 1476 aa22.83■■□□□ 1.25
TSPAN9-207ENST00000539631 LAMC3Q9Y6N6 1575 aa22.81■■□□□ 1.24
TSPAN9-207ENST00000539631 CADPSQ9ULU8 1353 aa22.76■■□□□ 1.23
TSPAN9-207ENST00000539631 CFTRP13569 1480 aa22.67■■□□□ 1.22
TSPAN9-207ENST00000539631 ERCC6Q03468 1493 aa22.65■■□□□ 1.22
TSPAN9-207ENST00000539631 KIF21AQ7Z4S6 1674 aa22.64■■□□□ 1.21
TSPAN9-207ENST00000539631 PRDM2Q13029 1718 aa22.62■■□□□ 1.21
TSPAN9-207ENST00000539631 PDS5BQ9NTI5 1447 aa22.61■■□□□ 1.21
TSPAN9-207ENST00000539631 FANCD2Q9BXW9 1451 aa22.52■■□□□ 1.2
TSPAN9-207ENST00000539631 THOC2Q8NI27 1593 aaKnown RBP22.47■■□□□ 1.19
TSPAN9-207ENST00000539631 CEP164Q9UPV0 1460 aa22.47■■□□□ 1.19
TSPAN9-207ENST00000539631 MRC2Q9UBG0 1479 aa22.39■■□□□ 1.17
TSPAN9-207ENST00000539631 CUX2O14529 1486 aa22.32■■□□□ 1.16
TSPAN9-207ENST00000539631 WDR62O43379 1518 aa22.31■■□□□ 1.16
TSPAN9-207ENST00000539631 URB2Q14146 1524 aaKnown RBP22.3■■□□□ 1.16
TSPAN9-207ENST00000539631 TOPBP1Q92547 1522 aa22.19■■□□□ 1.14
TSPAN9-207ENST00000539631 DNMBPQ6XZF7 1577 aa22.19■■□□□ 1.14
TSPAN9-207ENST00000539631 ABCC8Q09428 1581 aa22.16■■□□□ 1.14
TSPAN9-207ENST00000539631 CUX1P39880 1505 aa22.11■■□□□ 1.13
TSPAN9-207ENST00000539631 WRNQ14191 1432 aaPredicted RBP eCLIP22.02■■□□□ 1.12
TSPAN9-207ENST00000539631 POLA1P09884 1462 aaPredicted RBP22.01■■□□□ 1.11
TSPAN9-207ENST00000539631 SYNJ1O43426 1573 aa22■■□□□ 1.11
TSPAN9-207ENST00000539631 BIVM-ERCC5R4GMW8 1640 aa22■■□□□ 1.11
TSPAN9-207ENST00000539631 FGD5Q6ZNL6 1462 aa22■■□□□ 1.11
TSPAN9-207ENST00000539631 TOP2BQ02880 1626 aa21.98■■□□□ 1.11
TSPAN9-207ENST00000539631 IFT140Q96RY7 1462 aa21.97■■□□□ 1.11
TSPAN9-207ENST00000539631 TARBP1Q13395 1621 aaKnown RBP21.95■■□□□ 1.1
TSPAN9-207ENST00000539631 RAD54L2Q9Y4B4 1467 aa21.93■■□□□ 1.1
TSPAN9-207ENST00000539631 SOGA1O94964 1423 aa21.91■■□□□ 1.1
TSPAN9-207ENST00000539631 ZNF608Q9ULD9 1512 aaPredicted RBP21.89■■□□□ 1.09
TSPAN9-207ENST00000539631 WDR97A6NE52 1622 aa21.86■■□□□ 1.09
TSPAN9-207ENST00000539631 EIF4G3O43432 1585 aaKnown RBP21.83■■□□□ 1.09
TSPAN9-207ENST00000539631 AQRO60306 1485 aaKnown RBP eCLIP21.78■■□□□ 1.086e-6■■■■□ 23.2
TSPAN9-207ENST00000539631 ABCA10Q8WWZ4 1543 aa21.77■■□□□ 1.08
TSPAN9-207ENST00000539631 TRIM41Q8WV44 630 aa21.77■■□□□ 1.08
TSPAN9-207ENST00000539631 TDRD9Q8NDG6 1382 aaKnown RBP21.76■■□□□ 1.07
TSPAN9-207ENST00000539631 ABCA5Q8WWZ7 1642 aa21.71■■□□□ 1.07
TSPAN9-207ENST00000539631 PBRM1Q86U86 1689 aa21.69■■□□□ 1.06
TSPAN9-207ENST00000539631 GAPVD1Q14C86 1478 aa21.67■■□□□ 1.06
TSPAN9-207ENST00000539631 GRIN2BQ13224 1484 aa21.63■■□□□ 1.05
TSPAN9-207ENST00000539631 SNAPC4Q5SXM2 1469 aa21.59■■□□□ 1.05
TSPAN9-207ENST00000539631 CHD1O14646 1710 aa21.56■■□□□ 1.04
TSPAN9-207ENST00000539631 MAGI1Q96QZ7 1491 aaPredicted RBP21.54■■□□□ 1.04
TSPAN9-207ENST00000539631 CHIC1Q5VXU3 224 aa21.53■■□□□ 1.04
TSPAN9-207ENST00000539631 KIF27Q86VH2 1401 aa21.53■■□□□ 1.04
TSPAN9-207ENST00000539631 ERICH3Q5RHP9 1530 aa21.52■■□□□ 1.04
TSPAN9-207ENST00000539631 ADAMTS12P58397 1594 aa21.48■■□□□ 1.03
TSPAN9-207ENST00000539631 RUSC2Q8N2Y8 1516 aa21.47■■□□□ 1.03
TSPAN9-207ENST00000539631 FBLN2P98095 1184 aa21.47■■□□□ 1.03
TSPAN9-207ENST00000539631 SYNJ2O15056 1496 aa21.45■■□□□ 1.03
TSPAN9-207ENST00000539631 CHMP7Q8WUX9 453 aaPredicted RBP21.43■■□□□ 1.02
TSPAN9-207ENST00000539631 IGF1RP08069 1367 aa21.42■■□□□ 1.02
TSPAN9-207ENST00000539631 OSCARQ8IYS5 282 aa21.42■■□□□ 1.02
TSPAN9-207ENST00000539631 FHAD1B1AJZ9 1412 aa21.41■■□□□ 1.02
TSPAN9-207ENST00000539631 CUL7Q14999 1698 aa21.4■■□□□ 1.02
TSPAN9-207ENST00000539631 GRIN2AQ12879 1464 aa21.36■■□□□ 1.01
TSPAN9-207ENST00000539631 CARMIL1Q5VZK9 1371 aa21.31■■□□□ 1
TSPAN9-207ENST00000539631 CEP170Q5SW79 1584 aa21.28■■□□□ 1
TSPAN9-207ENST00000539631 CLASP1Q7Z460 1538 aa21.28■■□□□ 1
TSPAN9-207ENST00000539631 NUP160Q12769 1436 aa21.25■□□□□ 0.99
TSPAN9-207ENST00000539631 EEA1Q15075 1411 aa21.25■□□□□ 0.99
TSPAN9-207ENST00000539631 FAM9AQ8IZU1 332 aaPredicted RBP21.22■□□□□ 0.99
TSPAN9-207ENST00000539631 RAPGEF2Q9Y4G8 1499 aa21.21■□□□□ 0.99
TSPAN9-207ENST00000539631 CSRNP3Q8WYN3 585 aa21.2■□□□□ 0.98
TSPAN9-207ENST00000539631 PRXQ9BXM0 1461 aa21.18■□□□□ 0.98
TSPAN9-207ENST00000539631 RIMBP3CA6NJZ7 1639 aa21.14■□□□□ 0.97
TSPAN9-207ENST00000539631 RIMBP3BA6NNM3 1639 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 209.5 ms