RNA–Protein interactions for RNA: ENST00000539047.1

VAMP1-207, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 4

Gene VAMP1, Length 565 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-207ENST00000539047 NISCHQ9Y2I1 1504 aa35.66■■■■□ 3.3
VAMP1-207ENST00000539047 CCDC180Q9P1Z9 1646 aa31.49■■■□□ 2.63
VAMP1-207ENST00000539047 ABCC9O60706 1549 aa30.05■■■□□ 2.4
VAMP1-207ENST00000539047 ZCCHC6Q5VYS8 1495 aaKnown RBP29.9■■■□□ 2.38
VAMP1-207ENST00000539047 DCAF1Q9Y4B6 1507 aa29.57■■■□□ 2.32
VAMP1-207ENST00000539047 DCAF8L2P0C7V8 631 aa29.45■■■□□ 2.31
VAMP1-207ENST00000539047 MYO15BQ96JP2 1530 aa29.38■■■□□ 2.29
VAMP1-207ENST00000539047 NACADO15069 1562 aa29.33■■■□□ 2.29
VAMP1-207ENST00000539047 RB1CC1Q8TDY2 1594 aa29.19■■■□□ 2.26
VAMP1-207ENST00000539047 SCRIBQ14160 1630 aa28.75■■■□□ 2.19
VAMP1-207ENST00000539047 SHROOM4Q9ULL8 1493 aa28.69■■■□□ 2.18
VAMP1-207ENST00000539047 UNC13AQ9UPW8 1703 aa28.56■■■□□ 2.16
VAMP1-207ENST00000539047 DNAJC5BQ9UF47 199 aa28.15■■■□□ 2.1
VAMP1-207ENST00000539047 BICRAQ9NZM4 1560 aa28.14■■■□□ 2.1
VAMP1-207ENST00000539047 PABPN1Q86U42 306 aaKnown RBP eCLIP28.06■■■□□ 2.08
VAMP1-207ENST00000539047 BAZ1AQ9NRL2 1556 aaPredicted RBP27.66■■■□□ 2.02
VAMP1-207ENST00000539047 CECR2Q9BXF3 1484 aa27.6■■■□□ 2.01
VAMP1-207ENST00000539047 SMARCA4P51532 1647 aa27.56■■■□□ 2
VAMP1-207ENST00000539047 MROH2BQ7Z745 1585 aa27.47■■□□□ 1.99
VAMP1-207ENST00000539047 RSF1Q96T23 1441 aaPredicted RBP27.43■■□□□ 1.98
VAMP1-207ENST00000539047 SUPT5HO00267 1087 aaKnown RBP27.41■■□□□ 1.98
VAMP1-207ENST00000539047 EIF4G1Q04637 1599 aaKnown RBP27.39■■□□□ 1.98
VAMP1-207ENST00000539047 WIZO95785 1651 aa27.29■■□□□ 1.96
VAMP1-207ENST00000539047 PEG3Q9GZU2 1588 aa27.23■■□□□ 1.95
VAMP1-207ENST00000539047 SMARCA2P51531 1590 aa27.22■■□□□ 1.95
VAMP1-207ENST00000539047 ATAD2BQ9ULI0 1458 aa27.1■■□□□ 1.93
VAMP1-207ENST00000539047 CC2D2AQ9P2K1 1620 aa27.09■■□□□ 1.93
VAMP1-207ENST00000539047 TOP2AP11388 1531 aaKnown RBP27.07■■□□□ 1.92
VAMP1-207ENST00000539047 BAZ1BQ9UIG0 1483 aaKnown RBP27.02■■□□□ 1.92
VAMP1-207ENST00000539047 HMGXB3Q12766 1538 aa27■■□□□ 1.91
VAMP1-207ENST00000539047 NCAPD3P42695 1498 aa26.94■■□□□ 1.9
VAMP1-207ENST00000539047 CCDC88BA6NC98 1476 aa26.66■■□□□ 1.86
VAMP1-207ENST00000539047 PRDM2Q13029 1718 aa26.37■■□□□ 1.81
VAMP1-207ENST00000539047 CFTRP13569 1480 aa26.24■■□□□ 1.79
VAMP1-207ENST00000539047 LAMC3Q9Y6N6 1575 aa26.23■■□□□ 1.79
VAMP1-207ENST00000539047 CADPSQ9ULU8 1353 aa26.21■■□□□ 1.79
VAMP1-207ENST00000539047 NESP48681 1621 aa26.04■■□□□ 1.76
VAMP1-207ENST00000539047 CHIC1Q5VXU3 224 aa26.01■■□□□ 1.75
VAMP1-207ENST00000539047 DNAJC5Q9H3Z4 198 aa26.01■■□□□ 1.75
VAMP1-207ENST00000539047 ABCC8Q09428 1581 aa25.99■■□□□ 1.75
VAMP1-207ENST00000539047 PDS5BQ9NTI5 1447 aa25.97■■□□□ 1.75
VAMP1-207ENST00000539047 FANCD2Q9BXW9 1451 aa25.97■■□□□ 1.75
VAMP1-207ENST00000539047 WRNQ14191 1432 aaPredicted RBP eCLIP25.92■■□□□ 1.74
VAMP1-207ENST00000539047 CEP164Q9UPV0 1460 aa25.91■■□□□ 1.74
VAMP1-207ENST00000539047 KIF21AQ7Z4S6 1674 aa25.91■■□□□ 1.74
VAMP1-207ENST00000539047 ERCC6Q03468 1493 aa25.91■■□□□ 1.74
VAMP1-207ENST00000539047 TRIM41Q8WV44 630 aa25.89■■□□□ 1.74
VAMP1-207ENST00000539047 BIVM-ERCC5R4GMW8 1640 aa25.85■■□□□ 1.73
VAMP1-207ENST00000539047 SYNJ1O43426 1573 aa25.82■■□□□ 1.72
VAMP1-207ENST00000539047 TOP2BQ02880 1626 aa25.81■■□□□ 1.72
VAMP1-207ENST00000539047 DNMBPQ6XZF7 1577 aa25.75■■□□□ 1.71
VAMP1-207ENST00000539047 CUX2O14529 1486 aa25.75■■□□□ 1.71
VAMP1-207ENST00000539047 CUX1P39880 1505 aa25.74■■□□□ 1.71
VAMP1-207ENST00000539047 AEBP2Q6ZN18 517 aaPredicted RBP25.72■■□□□ 1.71
VAMP1-207ENST00000539047 MRC2Q9UBG0 1479 aa25.67■■□□□ 1.7
VAMP1-207ENST00000539047 TOPBP1Q92547 1522 aa25.64■■□□□ 1.7
VAMP1-207ENST00000539047 URB2Q14146 1524 aaKnown RBP25.62■■□□□ 1.69
VAMP1-207ENST00000539047 FGD5Q6ZNL6 1462 aa25.56■■□□□ 1.68
VAMP1-207ENST00000539047 THOC2Q8NI27 1593 aaKnown RBP25.56■■□□□ 1.68
VAMP1-207ENST00000539047 WDR62O43379 1518 aa25.55■■□□□ 1.68
VAMP1-207ENST00000539047 POLA1P09884 1462 aaPredicted RBP25.47■■□□□ 1.67
VAMP1-207ENST00000539047 EEA1Q15075 1411 aa25.46■■□□□ 1.67
VAMP1-207ENST00000539047 WDR97A6NE52 1622 aa25.38■■□□□ 1.65
VAMP1-207ENST00000539047 SOGA1O94964 1423 aa25.37■■□□□ 1.65
VAMP1-207ENST00000539047 KIF27Q86VH2 1401 aa25.34■■□□□ 1.65
VAMP1-207ENST00000539047 ABCA10Q8WWZ4 1543 aa25.33■■□□□ 1.65
VAMP1-207ENST00000539047 RAD54L2Q9Y4B4 1467 aa25.31■■□□□ 1.64
VAMP1-207ENST00000539047 TARBP1Q13395 1621 aaKnown RBP25.3■■□□□ 1.64
VAMP1-207ENST00000539047 FAM9AQ8IZU1 332 aaPredicted RBP25.3■■□□□ 1.64
VAMP1-207ENST00000539047 IFT140Q96RY7 1462 aa25.29■■□□□ 1.64
VAMP1-207ENST00000539047 RUSC2Q8N2Y8 1516 aa25.23■■□□□ 1.63
VAMP1-207ENST00000539047 ABCA5Q8WWZ7 1642 aa25.22■■□□□ 1.63
VAMP1-207ENST00000539047 CSRNP3Q8WYN3 585 aa25.17■■□□□ 1.62
VAMP1-207ENST00000539047 PBRM1Q86U86 1689 aa25.16■■□□□ 1.62
VAMP1-207ENST00000539047 KIF21BO75037 1637 aa25.15■■□□□ 1.62
VAMP1-207ENST00000539047 GAPVD1Q14C86 1478 aa25.13■■□□□ 1.61
VAMP1-207ENST00000539047 CUL7Q14999 1698 aa25.13■■□□□ 1.61
VAMP1-207ENST00000539047 EIF4G3O43432 1585 aaKnown RBP25.1■■□□□ 1.61
VAMP1-207ENST00000539047 ERICH3Q5RHP9 1530 aa25.1■■□□□ 1.61
VAMP1-207ENST00000539047 TDRD9Q8NDG6 1382 aaKnown RBP25.08■■□□□ 1.61
VAMP1-207ENST00000539047 GOLGA3Q08378 1498 aa25.05■■□□□ 1.6
VAMP1-207ENST00000539047 ZNF608Q9ULD9 1512 aaPredicted RBP25.02■■□□□ 1.6
VAMP1-207ENST00000539047 GRIN2BQ13224 1484 aa25.02■■□□□ 1.6
VAMP1-207ENST00000539047 AQRO60306 1485 aaKnown RBP eCLIP24.99■■□□□ 1.59
VAMP1-207ENST00000539047 IGF1RP08069 1367 aa24.99■■□□□ 1.59
VAMP1-207ENST00000539047 PRXQ9BXM0 1461 aa24.99■■□□□ 1.59
VAMP1-207ENST00000539047 CARMIL1Q5VZK9 1371 aa24.94■■□□□ 1.58
VAMP1-207ENST00000539047 RAPGEF2Q9Y4G8 1499 aa24.94■■□□□ 1.58
VAMP1-207ENST00000539047 ADAMTS12P58397 1594 aa24.93■■□□□ 1.58
VAMP1-207ENST00000539047 LOC105371045A0A1W2PR82 267 aa24.92■■□□□ 1.58
VAMP1-207ENST00000539047 EHMT2Q96KQ7 1210 aa24.92■■□□□ 1.58
VAMP1-207ENST00000539047 MAGI1Q96QZ7 1491 aaPredicted RBP24.89■■□□□ 1.57
VAMP1-207ENST00000539047 SNAPC4Q5SXM2 1469 aa24.87■■□□□ 1.57
VAMP1-207ENST00000539047 FHAD1B1AJZ9 1412 aa24.86■■□□□ 1.57
VAMP1-207ENST00000539047 UBTFP17480 764 aaKnown RBP24.86■■□□□ 1.57
VAMP1-207ENST00000539047 CTTNBP2Q8WZ74 1663 aa24.81■■□□□ 1.56
VAMP1-207ENST00000539047 TNIKQ9UKE5 1360 aa24.81■■□□□ 1.56
VAMP1-207ENST00000539047 SYNJ2O15056 1496 aa24.76■■□□□ 1.55
VAMP1-207ENST00000539047 GRIN2AQ12879 1464 aa24.7■■□□□ 1.54
VAMP1-207ENST00000539047 OSCARQ8IYS5 282 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms