RNA–Protein interactions for RNA: ENST00000538827.5

CD4-208, Transcript of CD4 molecule, humanhuman

TSL 1 (best)

Gene CD4, Length 985 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-208ENST00000538827 NISCHQ9Y2I1 1504 aa32.94■■■□□ 2.86
CD4-208ENST00000538827 ABCC9O60706 1549 aa29.06■■■□□ 2.24
CD4-208ENST00000538827 CCDC180Q9P1Z9 1646 aa29.05■■■□□ 2.24
CD4-208ENST00000538827 DNAJC5BQ9UF47 199 aa28.03■■■□□ 2.08
CD4-208ENST00000538827 ZCCHC6Q5VYS8 1495 aaKnown RBP27.62■■■□□ 2.01
CD4-208ENST00000538827 RB1CC1Q8TDY2 1594 aa27.36■■□□□ 1.97
CD4-208ENST00000538827 DCAF8L2P0C7V8 631 aa27.29■■□□□ 1.96
CD4-208ENST00000538827 DCAF1Q9Y4B6 1507 aa27.22■■□□□ 1.95
CD4-208ENST00000538827 NACADO15069 1562 aa27.07■■□□□ 1.92
CD4-208ENST00000538827 MYO15BQ96JP2 1530 aa27.05■■□□□ 1.92
CD4-208ENST00000538827 PABPN1Q86U42 306 aaKnown RBP eCLIP26.95■■□□□ 1.9
CD4-208ENST00000538827 SCRIBQ14160 1630 aa26.65■■□□□ 1.86
CD4-208ENST00000538827 SHROOM4Q9ULL8 1493 aa26.61■■□□□ 1.85
CD4-208ENST00000538827 UNC13AQ9UPW8 1703 aa26.59■■□□□ 1.85
CD4-208ENST00000538827 BICRAQ9NZM4 1560 aa26.53■■□□□ 1.84
CD4-208ENST00000538827 DNAJC5Q9H3Z4 198 aa26.46■■□□□ 1.83
CD4-208ENST00000538827 CECR2Q9BXF3 1484 aa26.32■■□□□ 1.8
CD4-208ENST00000538827 CC2D2AQ9P2K1 1620 aa26.21■■□□□ 1.79
CD4-208ENST00000538827 EIF4G1Q04637 1599 aaKnown RBP25.97■■□□□ 1.75
CD4-208ENST00000538827 BAZ1AQ9NRL2 1556 aaPredicted RBP25.52■■□□□ 1.68
CD4-208ENST00000538827 CUX2O14529 1486 aa25.49■■□□□ 1.67
CD4-208ENST00000538827 SMARCA4P51532 1647 aa25.48■■□□□ 1.67
CD4-208ENST00000538827 MROH2BQ7Z745 1585 aa25.44■■□□□ 1.66
CD4-208ENST00000538827 RSF1Q96T23 1441 aaPredicted RBP25.34■■□□□ 1.65
CD4-208ENST00000538827 SUPT5HO00267 1087 aaKnown RBP25.33■■□□□ 1.65
CD4-208ENST00000538827 WIZO95785 1651 aa25.27■■□□□ 1.64
CD4-208ENST00000538827 ERCC6Q03468 1493 aa25.21■■□□□ 1.63
CD4-208ENST00000538827 PEG3Q9GZU2 1588 aa25.13■■□□□ 1.61
CD4-208ENST00000538827 SMARCA2P51531 1590 aa25.12■■□□□ 1.61
CD4-208ENST00000538827 ATAD2BQ9ULI0 1458 aa25.09■■□□□ 1.61
CD4-208ENST00000538827 TOP2AP11388 1531 aaKnown RBP25.01■■□□□ 1.59
CD4-208ENST00000538827 BAZ1BQ9UIG0 1483 aaKnown RBP24.98■■□□□ 1.59
CD4-208ENST00000538827 NCAPD3P42695 1498 aa24.96■■□□□ 1.59
CD4-208ENST00000538827 HMGXB3Q12766 1538 aa24.94■■□□□ 1.58
CD4-208ENST00000538827 TRIM41Q8WV44 630 aa24.87■■□□□ 1.57
CD4-208ENST00000538827 NESP48681 1621 aa24.71■■□□□ 1.55
CD4-208ENST00000538827 CCDC88BA6NC98 1476 aa24.65■■□□□ 1.54
CD4-208ENST00000538827 THOC2Q8NI27 1593 aaKnown RBP24.62■■□□□ 1.53
CD4-208ENST00000538827 LAMC3Q9Y6N6 1575 aa24.48■■□□□ 1.51
CD4-208ENST00000538827 PDS5BQ9NTI5 1447 aa24.44■■□□□ 1.5
CD4-208ENST00000538827 PRDM2Q13029 1718 aa24.33■■□□□ 1.49
CD4-208ENST00000538827 KIF21AQ7Z4S6 1674 aa24.32■■□□□ 1.48
CD4-208ENST00000538827 CFTRP13569 1480 aa24.25■■□□□ 1.47
CD4-208ENST00000538827 OSCARQ8IYS5 282 aa24.24■■□□□ 1.47
CD4-208ENST00000538827 CADPSQ9ULU8 1353 aa24.24■■□□□ 1.47
CD4-208ENST00000538827 MRC2Q9UBG0 1479 aa24.2■■□□□ 1.47
CD4-208ENST00000538827 WDR62O43379 1518 aa24.15■■□□□ 1.46
CD4-208ENST00000538827 ABCC8Q09428 1581 aa24.08■■□□□ 1.44
CD4-208ENST00000538827 FANCD2Q9BXW9 1451 aa24.04■■□□□ 1.44
CD4-208ENST00000538827 CEP164Q9UPV0 1460 aa23.97■■□□□ 1.43
CD4-208ENST00000538827 CHIC1Q5VXU3 224 aa23.96■■□□□ 1.43
CD4-208ENST00000538827 WRNQ14191 1432 aaPredicted RBP eCLIP23.92■■□□□ 1.42
CD4-208ENST00000538827 SYNJ1O43426 1573 aa23.9■■□□□ 1.42
CD4-208ENST00000538827 RIMBP3CA6NJZ7 1639 aa23.86■■□□□ 1.41
CD4-208ENST00000538827 RIMBP3BA6NNM3 1639 aa23.86■■□□□ 1.41
CD4-208ENST00000538827 RIMBP3Q9UFD9 1639 aa23.86■■□□□ 1.41
CD4-208ENST00000538827 BIVM-ERCC5R4GMW8 1640 aa23.84■■□□□ 1.41
CD4-208ENST00000538827 CUX1P39880 1505 aa23.84■■□□□ 1.41
CD4-208ENST00000538827 TOP2BQ02880 1626 aa23.82■■□□□ 1.4
CD4-208ENST00000538827 DNMBPQ6XZF7 1577 aa23.8■■□□□ 1.4
CD4-208ENST00000538827 URB2Q14146 1524 aaKnown RBP23.76■■□□□ 1.39
CD4-208ENST00000538827 ARHGEF11O15085 1522 aa23.74■■□□□ 1.39
CD4-208ENST00000538827 TOPBP1Q92547 1522 aa23.74■■□□□ 1.39
CD4-208ENST00000538827 TRHP20396 242 aaPredicted RBP23.68■■□□□ 1.38
CD4-208ENST00000538827 CYB5RLQ6IPT4 315 aa23.66■■□□□ 1.38
CD4-208ENST00000538827 FGD5Q6ZNL6 1462 aa23.66■■□□□ 1.38
CD4-208ENST00000538827 AEBP2Q6ZN18 517 aaPredicted RBP23.65■■□□□ 1.38
CD4-208ENST00000538827 POLA1P09884 1462 aaPredicted RBP23.58■■□□□ 1.37
CD4-208ENST00000538827 IFT140Q96RY7 1462 aa23.52■■□□□ 1.36
CD4-208ENST00000538827 RAD54L2Q9Y4B4 1467 aa23.49■■□□□ 1.35
CD4-208ENST00000538827 WDR97A6NE52 1622 aa23.48■■□□□ 1.35
CD4-208ENST00000538827 ZNF608Q9ULD9 1512 aaPredicted RBP23.48■■□□□ 1.35
CD4-208ENST00000538827 SOGA1O94964 1423 aa23.46■■□□□ 1.35
CD4-208ENST00000538827 ARAP1Q96P48 1450 aa23.43■■□□□ 1.34
CD4-208ENST00000538827 TARBP1Q13395 1621 aaKnown RBP23.43■■□□□ 1.34
CD4-208ENST00000538827 FAM9AQ8IZU1 332 aaPredicted RBP23.42■■□□□ 1.34
CD4-208ENST00000538827 ABCA10Q8WWZ4 1543 aa23.4■■□□□ 1.34
CD4-208ENST00000538827 RUSC2Q8N2Y8 1516 aa23.39■■□□□ 1.34
CD4-208ENST00000538827 EEA1Q15075 1411 aa23.36■■□□□ 1.33
CD4-208ENST00000538827 KIF27Q86VH2 1401 aa23.35■■□□□ 1.33
CD4-208ENST00000538827 ABCA5Q8WWZ7 1642 aa23.33■■□□□ 1.32
CD4-208ENST00000538827 EIF4G3O43432 1585 aaKnown RBP23.29■■□□□ 1.32
CD4-208ENST00000538827 PBRM1Q86U86 1689 aa23.28■■□□□ 1.32
CD4-208ENST00000538827 TDRD9Q8NDG6 1382 aaKnown RBP23.26■■□□□ 1.31
CD4-208ENST00000538827 FBLN2P98095 1184 aa23.25■■□□□ 1.31
CD4-208ENST00000538827 CHD1O14646 1710 aa23.24■■□□□ 1.31
CD4-208ENST00000538827 GAPVD1Q14C86 1478 aa23.23■■□□□ 1.31
CD4-208ENST00000538827 AQRO60306 1485 aaKnown RBP eCLIP23.2■■□□□ 1.3
CD4-208ENST00000538827 CSRNP3Q8WYN3 585 aa23.18■■□□□ 1.3
CD4-208ENST00000538827 CUL7Q14999 1698 aa23.16■■□□□ 1.3
CD4-208ENST00000538827 KIF21BO75037 1637 aa23.15■■□□□ 1.3
CD4-208ENST00000538827 ERICH3Q5RHP9 1530 aa23.15■■□□□ 1.3
CD4-208ENST00000538827 EHMT2Q96KQ7 1210 aa23.14■■□□□ 1.29
CD4-208ENST00000538827 GRIN2BQ13224 1484 aa23.12■■□□□ 1.29
CD4-208ENST00000538827 IGF1RP08069 1367 aa23.09■■□□□ 1.29
CD4-208ENST00000538827 ADAMTS12P58397 1594 aa23.08■■□□□ 1.29
CD4-208ENST00000538827 GOLGA3Q08378 1498 aa23.07■■□□□ 1.28
CD4-208ENST00000538827 SNAPC4Q5SXM2 1469 aa23.06■■□□□ 1.28
CD4-208ENST00000538827 PRXQ9BXM0 1461 aa23.05■■□□□ 1.28
CD4-208ENST00000538827 CLASP1Q7Z460 1538 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms