RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 NISCHQ9Y2I1 1504 aa15.77■□□□□ 0.11
PTPRB-203ENST00000538174 CCDC180Q9P1Z9 1646 aa14.76□□□□□ -0.05
PTPRB-203ENST00000538174 ABCC9O60706 1549 aa14.42□□□□□ -0.1
PTPRB-203ENST00000538174 RB1CC1Q8TDY2 1594 aa14.05□□□□□ -0.16
PTPRB-203ENST00000538174 NACADO15069 1562 aa13.94□□□□□ -0.18
PTPRB-203ENST00000538174 SHROOM4Q9ULL8 1493 aa13.9□□□□□ -0.18
PTPRB-203ENST00000538174 MYO15BQ96JP2 1530 aa13.88□□□□□ -0.19
PTPRB-203ENST00000538174 DNAJC5BQ9UF47 199 aa13.79□□□□□ -0.2
PTPRB-203ENST00000538174 UNC13AQ9UPW8 1703 aa13.6□□□□□ -0.23
PTPRB-203ENST00000538174 BICRAQ9NZM4 1560 aa13.53□□□□□ -0.24
PTPRB-203ENST00000538174 DCAF1Q9Y4B6 1507 aa13.42□□□□□ -0.26
PTPRB-203ENST00000538174 DNAJC5Q9H3Z4 198 aa13.37□□□□□ -0.27
PTPRB-203ENST00000538174 CC2D2AQ9P2K1 1620 aa13.29□□□□□ -0.28
PTPRB-203ENST00000538174 CECR2Q9BXF3 1484 aa13.25□□□□□ -0.29
PTPRB-203ENST00000538174 CUX2O14529 1486 aa13.21□□□□□ -0.29
PTPRB-203ENST00000538174 EIF4G1Q04637 1599 aaKnown RBP13.21□□□□□ -0.3
PTPRB-203ENST00000538174 PABPN1Q86U42 306 aaKnown RBP eCLIP13.08□□□□□ -0.32
PTPRB-203ENST00000538174 ZCCHC6Q5VYS8 1495 aaKnown RBP13.03□□□□□ -0.32
PTPRB-203ENST00000538174 SCRIBQ14160 1630 aa12.78□□□□□ -0.36
PTPRB-203ENST00000538174 NCAPD3P42695 1498 aa12.76□□□□□ -0.37
PTPRB-203ENST00000538174 HMGXB3Q12766 1538 aa12.74□□□□□ -0.37
PTPRB-203ENST00000538174 THOC2Q8NI27 1593 aaKnown RBP12.65□□□□□ -0.38
PTPRB-203ENST00000538174 SMARCA2P51531 1590 aa12.63□□□□□ -0.39
PTPRB-203ENST00000538174 LAMC3Q9Y6N6 1575 aa12.61□□□□□ -0.39
PTPRB-203ENST00000538174 ERCC6Q03468 1493 aa12.61□□□□□ -0.39
PTPRB-203ENST00000538174 PEG3Q9GZU2 1588 aa12.59□□□□□ -0.39
PTPRB-203ENST00000538174 DCAF8L2P0C7V8 631 aa12.57□□□□□ -0.4
PTPRB-203ENST00000538174 SLC24A1O60721 1099 aa12.54□□□□□ -0.4
PTPRB-203ENST00000538174 ATAD2BQ9ULI0 1458 aa12.49□□□□□ -0.41
PTPRB-203ENST00000538174 SMARCA4P51532 1647 aa12.42□□□□□ -0.42
PTPRB-203ENST00000538174 WDR62O43379 1518 aa12.42□□□□□ -0.42
PTPRB-203ENST00000538174 PDS5BQ9NTI5 1447 aa12.4□□□□□ -0.42
PTPRB-203ENST00000538174 BAZ1AQ9NRL2 1556 aaPredicted RBP12.36□□□□□ -0.43
PTPRB-203ENST00000538174 MRC2Q9UBG0 1479 aa12.34□□□□□ -0.43
PTPRB-203ENST00000538174 KIF21AQ7Z4S6 1674 aa12.32□□□□□ -0.44
PTPRB-203ENST00000538174 BAZ1BQ9UIG0 1483 aaKnown RBP12.29□□□□□ -0.44
PTPRB-203ENST00000538174 NESP48681 1621 aa12.23□□□□□ -0.45
PTPRB-203ENST00000538174 CADPSQ9ULU8 1353 aa12.18□□□□□ -0.46
PTPRB-203ENST00000538174 PRDM2Q13029 1718 aa12.14□□□□□ -0.47
PTPRB-203ENST00000538174 RIMBP3CA6NJZ7 1639 aa12.13□□□□□ -0.47
PTPRB-203ENST00000538174 RIMBP3BA6NNM3 1639 aa12.13□□□□□ -0.47
PTPRB-203ENST00000538174 RIMBP3Q9UFD9 1639 aa12.13□□□□□ -0.47
PTPRB-203ENST00000538174 CEP164Q9UPV0 1460 aa12.11□□□□□ -0.47
PTPRB-203ENST00000538174 WDR97A6NE52 1622 aa12.1□□□□□ -0.47
PTPRB-203ENST00000538174 OSCARQ8IYS5 282 aa12.09□□□□□ -0.47
PTPRB-203ENST00000538174 TRIM41Q8WV44 630 aa12.05□□□□□ -0.48
PTPRB-203ENST00000538174 RSF1Q96T23 1441 aaPredicted RBP12.05□□□□□ -0.48
PTPRB-203ENST00000538174 CFTRP13569 1480 aa12.03□□□□□ -0.48
PTPRB-203ENST00000538174 ARHGEF11O15085 1522 aa12.01□□□□□ -0.49
PTPRB-203ENST00000538174 IFT140Q96RY7 1462 aa12.01□□□□□ -0.49
PTPRB-203ENST00000538174 ABCC8Q09428 1581 aa12.01□□□□□ -0.49
PTPRB-203ENST00000538174 FANCD2Q9BXW9 1451 aa11.99□□□□□ -0.49
PTPRB-203ENST00000538174 MROH2BQ7Z745 1585 aa11.93□□□□□ -0.5
PTPRB-203ENST00000538174 URB2Q14146 1524 aaKnown RBP11.91□□□□□ -0.5
PTPRB-203ENST00000538174 TOP2AP11388 1531 aaKnown RBP11.85□□□□□ -0.51
PTPRB-203ENST00000538174 ARAP1Q96P48 1450 aa11.84□□□□□ -0.51
PTPRB-203ENST00000538174 CLASP1Q7Z460 1538 aa11.84□□□□□ -0.51
PTPRB-203ENST00000538174 EIF4G3O43432 1585 aaKnown RBP11.82□□□□□ -0.52
PTPRB-203ENST00000538174 DNMBPQ6XZF7 1577 aa11.81□□□□□ -0.52
PTPRB-203ENST00000538174 CHD1O14646 1710 aa11.8□□□□□ -0.52
PTPRB-203ENST00000538174 TARBP1Q13395 1621 aaKnown RBP11.79□□□□□ -0.52
PTPRB-203ENST00000538174 MYT1Q01538 1121 aa11.76□□□□□ -0.53
PTPRB-203ENST00000538174 SYNJ1O43426 1573 aa11.76□□□□□ -0.53
PTPRB-203ENST00000538174 TOPBP1Q92547 1522 aa11.75□□□□□ -0.53
PTPRB-203ENST00000538174 WIZO95785 1651 aa11.74□□□□□ -0.53
PTPRB-203ENST00000538174 MAGI1Q96QZ7 1491 aaPredicted RBP11.72□□□□□ -0.53
PTPRB-203ENST00000538174 ZNF608Q9ULD9 1512 aaPredicted RBP11.66□□□□□ -0.54
PTPRB-203ENST00000538174 AEBP2Q6ZN18 517 aaPredicted RBP11.66□□□□□ -0.54
PTPRB-203ENST00000538174 PELP1Q8IZL8 1130 aaKnown RBP11.63□□□□□ -0.55
PTPRB-203ENST00000538174 TTBK1Q5TCY1 1321 aaPredicted RBP11.62□□□□□ -0.55
PTPRB-203ENST00000538174 SYNJ2O15056 1496 aa11.59□□□□□ -0.55
PTPRB-203ENST00000538174 SHROOM2Q13796 1616 aa11.58□□□□□ -0.56
PTPRB-203ENST00000538174 DAXXQ9UER7 740 aaPredicted RBP11.58□□□□□ -0.56
PTPRB-203ENST00000538174 GRIN2BQ13224 1484 aa11.56□□□□□ -0.56
PTPRB-203ENST00000538174 POLA1P09884 1462 aaPredicted RBP11.54□□□□□ -0.56
PTPRB-203ENST00000538174 PRKCSHP14314 528 aaPredicted RBP11.53□□□□□ -0.56
PTPRB-203ENST00000538174 CYB5RLQ6IPT4 315 aa11.52□□□□□ -0.57
PTPRB-203ENST00000538174 PBRM1Q86U86 1689 aa11.51□□□□□ -0.57
PTPRB-203ENST00000538174 GAPVD1Q14C86 1478 aa11.51□□□□□ -0.57
PTPRB-203ENST00000538174 KIF13AQ9H1H9 1805 aa11.5□□□□□ -0.57
PTPRB-203ENST00000538174 MAPKBP1O60336 1514 aa11.5□□□□□ -0.57
PTPRB-203ENST00000538174 TRHP20396 242 aaPredicted RBP11.5□□□□□ -0.57
PTPRB-203ENST00000538174 SNAPC4Q5SXM2 1469 aa11.49□□□□□ -0.57
PTPRB-203ENST00000538174 ABCA5Q8WWZ7 1642 aa11.48□□□□□ -0.57
PTPRB-203ENST00000538174 ERCC6L2Q5T890 1561 aa11.48□□□□□ -0.57
PTPRB-203ENST00000538174 CCDC88BA6NC98 1476 aa11.47□□□□□ -0.57
PTPRB-203ENST00000538174 NUP160Q12769 1436 aa11.45□□□□□ -0.58
PTPRB-203ENST00000538174 AQRO60306 1485 aaKnown RBP eCLIP11.45□□□□□ -0.58
PTPRB-203ENST00000538174 APLP2Q06481 763 aa11.43□□□□□ -0.58
PTPRB-203ENST00000538174 ABCA10Q8WWZ4 1543 aa11.42□□□□□ -0.58
PTPRB-203ENST00000538174 SOGA1O94964 1423 aa11.42□□□□□ -0.58
PTPRB-203ENST00000538174 ABCC10Q5T3U5 1492 aa11.39□□□□□ -0.59
PTPRB-203ENST00000538174 CEP170Q5SW79 1584 aa11.39□□□□□ -0.59
PTPRB-203ENST00000538174 ADAMTS12P58397 1594 aa11.38□□□□□ -0.59
PTPRB-203ENST00000538174 FGD5Q6ZNL6 1462 aa11.36□□□□□ -0.59
PTPRB-203ENST00000538174 GLI2P10070 1586 aa11.36□□□□□ -0.59
PTPRB-203ENST00000538174 DIP2BQ9P265 1576 aa11.36□□□□□ -0.59
PTPRB-203ENST00000538174 GRIN2AQ12879 1464 aa11.35□□□□□ -0.59
PTPRB-203ENST00000538174 ERICH3Q5RHP9 1530 aa11.34□□□□□ -0.59
PTPRB-203ENST00000538174 ERICH6Q7L0X2 663 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms