RNA–Protein interactions for RNA: ENST00000536871.6

SMG6-203, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 2 BASIC

Gene SMG6, Length 1,865 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-203ENST00000536871 NISCHQ9Y2I1 1504 aa29.52■■■□□ 2.32
SMG6-203ENST00000536871 CCDC180Q9P1Z9 1646 aa25.56■■□□□ 1.68
SMG6-203ENST00000536871 ZCCHC6Q5VYS8 1495 aaKnown RBP24.9■■□□□ 1.58
SMG6-203ENST00000536871 DCAF1Q9Y4B6 1507 aa24.52■■□□□ 1.52
SMG6-203ENST00000536871 SHROOM4Q9ULL8 1493 aa24.25■■□□□ 1.47
SMG6-203ENST00000536871 DCAF8L2P0C7V8 631 aa24.13■■□□□ 1.45
SMG6-203ENST00000536871 MYO15BQ96JP2 1530 aa24.09■■□□□ 1.45
SMG6-203ENST00000536871 NACADO15069 1562 aa23.73■■□□□ 1.39
SMG6-203ENST00000536871 SUPT5HO00267 1087 aaKnown RBP23.63■■□□□ 1.37
SMG6-203ENST00000536871 ABCC9O60706 1549 aa23.62■■□□□ 1.37
SMG6-203ENST00000536871 SCRIBQ14160 1630 aa23.43■■□□□ 1.34
SMG6-203ENST00000536871 RB1CC1Q8TDY2 1594 aa23.38■■□□□ 1.33
SMG6-203ENST00000536871 RSF1Q96T23 1441 aaPredicted RBP23.06■■□□□ 1.28
SMG6-203ENST00000536871 CHIC1Q5VXU3 224 aa22.92■■□□□ 1.26
SMG6-203ENST00000536871 BAZ1AQ9NRL2 1556 aaPredicted RBP22.8■■□□□ 1.24
SMG6-203ENST00000536871 CECR2Q9BXF3 1484 aa22.8■■□□□ 1.24
SMG6-203ENST00000536871 MROH2BQ7Z745 1585 aa22.75■■□□□ 1.23
SMG6-203ENST00000536871 UNC13AQ9UPW8 1703 aa22.73■■□□□ 1.23
SMG6-203ENST00000536871 SMARCA4P51532 1647 aa22.56■■□□□ 1.2
SMG6-203ENST00000536871 BICRAQ9NZM4 1560 aa22.55■■□□□ 1.2
SMG6-203ENST00000536871 WIZO95785 1651 aa22.55■■□□□ 1.2
SMG6-203ENST00000536871 TOP2AP11388 1531 aaKnown RBP22.45■■□□□ 1.18
SMG6-203ENST00000536871 PABPN1Q86U42 306 aaKnown RBP eCLIP22.34■■□□□ 1.17
SMG6-203ENST00000536871 PEG3Q9GZU2 1588 aa22.34■■□□□ 1.17
SMG6-203ENST00000536871 TRIM41Q8WV44 630 aa22.29■■□□□ 1.16
SMG6-203ENST00000536871 SMARCA2P51531 1590 aa22.2■■□□□ 1.14
SMG6-203ENST00000536871 EIF4G1Q04637 1599 aaKnown RBP22.19■■□□□ 1.14
SMG6-203ENST00000536871 CCDC88BA6NC98 1476 aa22.19■■□□□ 1.14
SMG6-203ENST00000536871 ATAD2BQ9ULI0 1458 aa22.11■■□□□ 1.13
SMG6-203ENST00000536871 BAZ1BQ9UIG0 1483 aaKnown RBP22.02■■□□□ 1.12
SMG6-203ENST00000536871 LOC105371045A0A1W2PR82 267 aa21.96■■□□□ 1.11
SMG6-203ENST00000536871 HMGXB3Q12766 1538 aa21.9■■□□□ 1.1
SMG6-203ENST00000536871 NCAPD3P42695 1498 aa21.89■■□□□ 1.09
SMG6-203ENST00000536871 EEA1Q15075 1411 aa21.8■■□□□ 1.08
SMG6-203ENST00000536871 ABCC8Q09428 1581 aa21.78■■□□□ 1.08
SMG6-203ENST00000536871 FAM9AQ8IZU1 332 aaPredicted RBP21.75■■□□□ 1.07
SMG6-203ENST00000536871 WRNQ14191 1432 aaPredicted RBP eCLIP21.73■■□□□ 1.071e-6■■■■■ 58.5
SMG6-203ENST00000536871 TRIM26Q12899 539 aaPredicted RBP21.54■■□□□ 1.04
SMG6-203ENST00000536871 CSRNP3Q8WYN3 585 aa21.52■■□□□ 1.04
SMG6-203ENST00000536871 SYNJ1O43426 1573 aa21.52■■□□□ 1.04
SMG6-203ENST00000536871 PCGF6Q9BYE7 350 aa21.52■■□□□ 1.03
SMG6-203ENST00000536871 SOGA1O94964 1423 aa21.51■■□□□ 1.03
SMG6-203ENST00000536871 CFTRP13569 1480 aa21.51■■□□□ 1.03
SMG6-203ENST00000536871 TOP2BQ02880 1626 aa21.48■■□□□ 1.03
SMG6-203ENST00000536871 TNIKQ9UKE5 1360 aa21.46■■□□□ 1.03
SMG6-203ENST00000536871 BIVM-ERCC5R4GMW8 1640 aa21.44■■□□□ 1.02
SMG6-203ENST00000536871 GOLGA3Q08378 1498 aa21.42■■□□□ 1.02
SMG6-203ENST00000536871 CC2D2AQ9P2K1 1620 aa21.41■■□□□ 1.02
SMG6-203ENST00000536871 CEP164Q9UPV0 1460 aa21.39■■□□□ 1.01
SMG6-203ENST00000536871 KIF21BO75037 1637 aa21.37■■□□□ 1.01
SMG6-203ENST00000536871 PRDM2Q13029 1718 aa21.37■■□□□ 1.01
SMG6-203ENST00000536871 HRCP23327 699 aa21.36■■□□□ 1.01
SMG6-203ENST00000536871 CADPSQ9ULU8 1353 aa21.35■■□□□ 1.01
SMG6-203ENST00000536871 RUSC2Q8N2Y8 1516 aa21.35■■□□□ 1.01
SMG6-203ENST00000536871 EHMT2Q96KQ7 1210 aa21.32■■□□□ 1
SMG6-203ENST00000536871 CEP162Q5TB80 1403 aa21.31■■□□□ 1
SMG6-203ENST00000536871 CUX1P39880 1505 aa21.26■□□□□ 0.99
SMG6-203ENST00000536871 UBTFP17480 764 aaKnown RBP21.26■□□□□ 0.99
SMG6-203ENST00000536871 KIF27Q86VH2 1401 aa21.19■□□□□ 0.98
SMG6-203ENST00000536871 ERICH3Q5RHP9 1530 aa21.18■□□□□ 0.98
SMG6-203ENST00000536871 PRXQ9BXM0 1461 aa21.12■□□□□ 0.97
SMG6-203ENST00000536871 FANCD2Q9BXW9 1451 aa21.08■□□□□ 0.96
SMG6-203ENST00000536871 RAPGEF2Q9Y4G8 1499 aa21.08■□□□□ 0.96
SMG6-203ENST00000536871 CLIP1P30622 1438 aa21.06■□□□□ 0.96
SMG6-203ENST00000536871 LAMC3Q9Y6N6 1575 aa21.06■□□□□ 0.96
SMG6-203ENST00000536871 ZEB1P37275 1124 aaPredicted RBP21.05■□□□□ 0.96
SMG6-203ENST00000536871 DNMBPQ6XZF7 1577 aa20.99■□□□□ 0.95
SMG6-203ENST00000536871 FGD5Q6ZNL6 1462 aa20.98■□□□□ 0.95
SMG6-203ENST00000536871 VPS8Q8N3P4 1428 aa20.97■□□□□ 0.95
SMG6-203ENST00000536871 CUX2O14529 1486 aa20.94■□□□□ 0.94
SMG6-203ENST00000536871 PDS5BQ9NTI5 1447 aa20.92■□□□□ 0.94
SMG6-203ENST00000536871 IGF1RP08069 1367 aa20.89■□□□□ 0.93
SMG6-203ENST00000536871 TOPBP1Q92547 1522 aa20.89■□□□□ 0.93
SMG6-203ENST00000536871 ABCA10Q8WWZ4 1543 aa20.86■□□□□ 0.93
SMG6-203ENST00000536871 APLP2Q06481 763 aa20.85■□□□□ 0.93
SMG6-203ENST00000536871 NESP48681 1621 aa20.84■□□□□ 0.93
SMG6-203ENST00000536871 PPARGC1BQ86YN6 1023 aaKnown RBP20.81■□□□□ 0.92
SMG6-203ENST00000536871 CARMIL1Q5VZK9 1371 aa20.81■□□□□ 0.92
SMG6-203ENST00000536871 POLA1P09884 1462 aaPredicted RBP20.81■□□□□ 0.92
SMG6-203ENST00000536871 URB2Q14146 1524 aaKnown RBP20.73■□□□□ 0.91
SMG6-203ENST00000536871 ARAP1Q96P48 1450 aa20.73■□□□□ 0.91
SMG6-203ENST00000536871 CUL7Q14999 1698 aa20.73■□□□□ 0.91
SMG6-203ENST00000536871 RAD54L2Q9Y4B4 1467 aa20.69■□□□□ 0.9
SMG6-203ENST00000536871 ARHGAP35Q9NRY4 1499 aa20.67■□□□□ 0.9
SMG6-203ENST00000536871 WDR97A6NE52 1622 aa20.66■□□□□ 0.9
SMG6-203ENST00000536871 RANGAP1P46060 587 aaPredicted RBP20.61■□□□□ 0.89
SMG6-203ENST00000536871 ABCA5Q8WWZ7 1642 aa20.6■□□□□ 0.89
SMG6-203ENST00000536871 MAP3K1Q13233 1512 aa20.6■□□□□ 0.89
SMG6-203ENST00000536871 KIF21AQ7Z4S6 1674 aa20.6■□□□□ 0.89
SMG6-203ENST00000536871 FHAD1B1AJZ9 1412 aa20.58■□□□□ 0.88
SMG6-203ENST00000536871 EFCAB5A4FU69 1503 aa20.57■□□□□ 0.88
SMG6-203ENST00000536871 GAPVD1Q14C86 1478 aa20.57■□□□□ 0.88
SMG6-203ENST00000536871 MRC2Q9UBG0 1479 aa20.57■□□□□ 0.88
SMG6-203ENST00000536871 TTBK1Q5TCY1 1321 aaPredicted RBP20.57■□□□□ 0.88
SMG6-203ENST00000536871 PELP1Q8IZL8 1130 aaKnown RBP20.56■□□□□ 0.88
SMG6-203ENST00000536871 CCER1Q8TC90 406 aaPredicted RBP20.56■□□□□ 0.88
SMG6-203ENST00000536871 DNAJC5BQ9UF47 199 aa20.54■□□□□ 0.88
SMG6-203ENST00000536871 TARBP1Q13395 1621 aaKnown RBP20.5■□□□□ 0.87
SMG6-203ENST00000536871 CTTNBP2Q8WZ74 1663 aa20.48■□□□□ 0.87
SMG6-203ENST00000536871 TDRD9Q8NDG6 1382 aaKnown RBP20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms