RNA–Protein interactions for RNA: ENST00000536590.1

CD4-206, Transcript of CD4 molecule, humanhuman

TSL 4

Gene CD4, Length 561 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-206ENST00000536590 NISCHQ9Y2I1 1504 aa19.45■□□□□ 0.7
CD4-206ENST00000536590 CCDC180Q9P1Z9 1646 aa17.2■□□□□ 0.34
CD4-206ENST00000536590 AEBP2Q6ZN18 517 aaPredicted RBP17■□□□□ 0.31
CD4-206ENST00000536590 ABCC9O60706 1549 aa16.66■□□□□ 0.26
CD4-206ENST00000536590 DCAF8L2P0C7V8 631 aa16.31■□□□□ 0.2
CD4-206ENST00000536590 CHIC1Q5VXU3 224 aa16.28■□□□□ 0.2
CD4-206ENST00000536590 ZCCHC6Q5VYS8 1495 aaKnown RBP16.22■□□□□ 0.19
CD4-206ENST00000536590 NACADO15069 1562 aa16.21■□□□□ 0.18
CD4-206ENST00000536590 MYO15BQ96JP2 1530 aa16.18■□□□□ 0.18
CD4-206ENST00000536590 RB1CC1Q8TDY2 1594 aa16.17■□□□□ 0.18
CD4-206ENST00000536590 DCAF1Q9Y4B6 1507 aa16.15■□□□□ 0.18
CD4-206ENST00000536590 SCRIBQ14160 1630 aa15.67■□□□□ 0.1
CD4-206ENST00000536590 PABPN1Q86U42 306 aaKnown RBP eCLIP15.62■□□□□ 0.09
CD4-206ENST00000536590 SHROOM4Q9ULL8 1493 aa15.6■□□□□ 0.09
CD4-206ENST00000536590 UNC13AQ9UPW8 1703 aa15.54■□□□□ 0.08
CD4-206ENST00000536590 BICRAQ9NZM4 1560 aa15.5■□□□□ 0.07
CD4-206ENST00000536590 EIF4G1Q04637 1599 aaKnown RBP15.18■□□□□ 0.02
CD4-206ENST00000536590 BAZ1AQ9NRL2 1556 aaPredicted RBP15.11■□□□□ 0.01
CD4-206ENST00000536590 CECR2Q9BXF3 1484 aa15.05■□□□□ -0
CD4-206ENST00000536590 CC2D2AQ9P2K1 1620 aa15.04■□□□□ -0
CD4-206ENST00000536590 DNAJC5BQ9UF47 199 aa15.04■□□□□ -0
CD4-206ENST00000536590 SMARCA4P51532 1647 aa15.01□□□□□ -0.01
CD4-206ENST00000536590 SMARCA2P51531 1590 aa15□□□□□ -0.01
CD4-206ENST00000536590 NCAPD3P42695 1498 aa14.95□□□□□ -0.02
CD4-206ENST00000536590 ATAD2BQ9ULI0 1458 aa14.94□□□□□ -0.02
CD4-206ENST00000536590 MROH2BQ7Z745 1585 aa14.92□□□□□ -0.02
CD4-206ENST00000536590 PEG3Q9GZU2 1588 aa14.89□□□□□ -0.03
CD4-206ENST00000536590 RSF1Q96T23 1441 aaPredicted RBP14.88□□□□□ -0.03
CD4-206ENST00000536590 BAZ1BQ9UIG0 1483 aaKnown RBP14.88□□□□□ -0.03
CD4-206ENST00000536590 HMGXB3Q12766 1538 aa14.87□□□□□ -0.03
CD4-206ENST00000536590 WIZO95785 1651 aa14.73□□□□□ -0.05
CD4-206ENST00000536590 SUPT5HO00267 1087 aaKnown RBP14.72□□□□□ -0.05
CD4-206ENST00000536590 TOP2AP11388 1531 aaKnown RBP14.7□□□□□ -0.06
CD4-206ENST00000536590 CADPSQ9ULU8 1353 aa14.55□□□□□ -0.08
CD4-206ENST00000536590 PDS5BQ9NTI5 1447 aa14.51□□□□□ -0.09
CD4-206ENST00000536590 LAMC3Q9Y6N6 1575 aa14.51□□□□□ -0.09
CD4-206ENST00000536590 CCDC88BA6NC98 1476 aa14.5□□□□□ -0.09
CD4-206ENST00000536590 ERCC6Q03468 1493 aa14.48□□□□□ -0.09
CD4-206ENST00000536590 CFTRP13569 1480 aa14.45□□□□□ -0.1
CD4-206ENST00000536590 NESP48681 1621 aa14.4□□□□□ -0.1
CD4-206ENST00000536590 PHF23Q9BUL5 403 aaPredicted RBP14.36□□□□□ -0.11
CD4-206ENST00000536590 FANCD2Q9BXW9 1451 aa14.34□□□□□ -0.11
CD4-206ENST00000536590 CEP164Q9UPV0 1460 aa14.34□□□□□ -0.11
CD4-206ENST00000536590 SENP3Q9H4L4 574 aaPredicted RBP14.34□□□□□ -0.11
CD4-206ENST00000536590 MRC2Q9UBG0 1479 aa14.26□□□□□ -0.13
CD4-206ENST00000536590 ABCC8Q09428 1581 aa14.26□□□□□ -0.13
CD4-206ENST00000536590 CUX2O14529 1486 aa14.24□□□□□ -0.13
CD4-206ENST00000536590 PRDM2Q13029 1718 aa14.24□□□□□ -0.13
CD4-206ENST00000536590 KIF21AQ7Z4S6 1674 aa14.2□□□□□ -0.14
CD4-206ENST00000536590 WDR62O43379 1518 aa14.15□□□□□ -0.14
CD4-206ENST00000536590 THOC2Q8NI27 1593 aaKnown RBP14.14□□□□□ -0.15
CD4-206ENST00000536590 DNMBPQ6XZF7 1577 aa14.11□□□□□ -0.15
CD4-206ENST00000536590 URB2Q14146 1524 aaKnown RBP14.1□□□□□ -0.15
CD4-206ENST00000536590 TOPBP1Q92547 1522 aa14.1□□□□□ -0.15
CD4-206ENST00000536590 WRNQ14191 1432 aaPredicted RBP eCLIP14.09□□□□□ -0.15
CD4-206ENST00000536590 IFT140Q96RY7 1462 aa14.05□□□□□ -0.16
CD4-206ENST00000536590 CUX1P39880 1505 aa14□□□□□ -0.17
CD4-206ENST00000536590 SOGA1O94964 1423 aa14□□□□□ -0.17
CD4-206ENST00000536590 POLA1P09884 1462 aaPredicted RBP13.99□□□□□ -0.17
CD4-206ENST00000536590 FGD5Q6ZNL6 1462 aa13.98□□□□□ -0.17
CD4-206ENST00000536590 TRIM41Q8WV44 630 aa13.97□□□□□ -0.17
CD4-206ENST00000536590 TOP2BQ02880 1626 aa13.97□□□□□ -0.17
CD4-206ENST00000536590 BIVM-ERCC5R4GMW8 1640 aa13.92□□□□□ -0.18
CD4-206ENST00000536590 WDR97A6NE52 1622 aa13.91□□□□□ -0.18
CD4-206ENST00000536590 SYNJ1O43426 1573 aa13.9□□□□□ -0.18
CD4-206ENST00000536590 RAD54L2Q9Y4B4 1467 aa13.89□□□□□ -0.19
CD4-206ENST00000536590 ABCA10Q8WWZ4 1543 aa13.89□□□□□ -0.19
CD4-206ENST00000536590 TDRD9Q8NDG6 1382 aaKnown RBP13.86□□□□□ -0.19
CD4-206ENST00000536590 TARBP1Q13395 1621 aaKnown RBP13.86□□□□□ -0.19
CD4-206ENST00000536590 KIF27Q86VH2 1401 aa13.84□□□□□ -0.19
CD4-206ENST00000536590 GRIN2BQ13224 1484 aa13.83□□□□□ -0.2
CD4-206ENST00000536590 GAPVD1Q14C86 1478 aa13.83□□□□□ -0.2
CD4-206ENST00000536590 ZNF608Q9ULD9 1512 aaPredicted RBP13.83□□□□□ -0.2
CD4-206ENST00000536590 AQRO60306 1485 aaKnown RBP eCLIP13.82□□□□□ -0.2
CD4-206ENST00000536590 EIF4G3O43432 1585 aaKnown RBP13.79□□□□□ -0.2
CD4-206ENST00000536590 CHMP7Q8WUX9 453 aaPredicted RBP13.78□□□□□ -0.2
CD4-206ENST00000536590 MAGI1Q96QZ7 1491 aaPredicted RBP13.78□□□□□ -0.2
CD4-206ENST00000536590 FBLN2P98095 1184 aa13.76□□□□□ -0.21
CD4-206ENST00000536590 ERICH3Q5RHP9 1530 aa13.74□□□□□ -0.21
CD4-206ENST00000536590 OSCARQ8IYS5 282 aa13.74□□□□□ -0.21
CD4-206ENST00000536590 EEA1Q15075 1411 aa13.73□□□□□ -0.21
CD4-206ENST00000536590 ABCA5Q8WWZ7 1642 aa13.72□□□□□ -0.21
CD4-206ENST00000536590 SNAPC4Q5SXM2 1469 aa13.72□□□□□ -0.21
CD4-206ENST00000536590 FHAD1B1AJZ9 1412 aa13.71□□□□□ -0.22
CD4-206ENST00000536590 SYNJ2O15056 1496 aa13.7□□□□□ -0.22
CD4-206ENST00000536590 IGF1RP08069 1367 aa13.69□□□□□ -0.22
CD4-206ENST00000536590 CARMIL1Q5VZK9 1371 aa13.66□□□□□ -0.22
CD4-206ENST00000536590 PBRM1Q86U86 1689 aa13.66□□□□□ -0.22
CD4-206ENST00000536590 CSRNP3Q8WYN3 585 aa13.65□□□□□ -0.22
CD4-206ENST00000536590 CUL7Q14999 1698 aa13.63□□□□□ -0.23
CD4-206ENST00000536590 ADAMTS12P58397 1594 aa13.61□□□□□ -0.23
CD4-206ENST00000536590 GRIN2AQ12879 1464 aa13.61□□□□□ -0.23
CD4-206ENST00000536590 DNAJC5Q9H3Z4 198 aa13.58□□□□□ -0.24
CD4-206ENST00000536590 RAPGEF2Q9Y4G8 1499 aa13.58□□□□□ -0.24
CD4-206ENST00000536590 FAM9AQ8IZU1 332 aaPredicted RBP13.57□□□□□ -0.24
CD4-206ENST00000536590 RUSC2Q8N2Y8 1516 aa13.54□□□□□ -0.24
CD4-206ENST00000536590 NUP160Q12769 1436 aa13.53□□□□□ -0.24
CD4-206ENST00000536590 CHD1O14646 1710 aa13.53□□□□□ -0.24
CD4-206ENST00000536590 PRXQ9BXM0 1461 aa13.52□□□□□ -0.25
CD4-206ENST00000536590 KIAA0586Q9BVV6 1533 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms