RNA–Protein interactions for RNA: ENST00000536563.1

CD4-205, Transcript of CD4 molecule, humanhuman

TSL 4

Gene CD4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-205ENST00000536563 NISCHQ9Y2I1 1504 aa36.76■■■■□ 3.48
CD4-205ENST00000536563 CCDC180Q9P1Z9 1646 aa32.65■■■□□ 2.82
CD4-205ENST00000536563 ABCC9O60706 1549 aa32.1■■■□□ 2.73
CD4-205ENST00000536563 DCAF8L2P0C7V8 631 aa30.91■■■□□ 2.54
CD4-205ENST00000536563 RB1CC1Q8TDY2 1594 aa30.83■■■□□ 2.53
CD4-205ENST00000536563 NACADO15069 1562 aa30.78■■■□□ 2.52
CD4-205ENST00000536563 ZCCHC6Q5VYS8 1495 aaKnown RBP30.58■■■□□ 2.49
CD4-205ENST00000536563 MYO15BQ96JP2 1530 aa30.56■■■□□ 2.48
CD4-205ENST00000536563 DCAF1Q9Y4B6 1507 aa30.4■■■□□ 2.46
CD4-205ENST00000536563 DNAJC5BQ9UF47 199 aa30.33■■■□□ 2.45
CD4-205ENST00000536563 PABPN1Q86U42 306 aaKnown RBP eCLIP30.04■■■□□ 2.4
CD4-205ENST00000536563 UNC13AQ9UPW8 1703 aa29.98■■■□□ 2.39
CD4-205ENST00000536563 SCRIBQ14160 1630 aa29.82■■■□□ 2.36
CD4-205ENST00000536563 BICRAQ9NZM4 1560 aa29.82■■■□□ 2.36
CD4-205ENST00000536563 SHROOM4Q9ULL8 1493 aa29.58■■■□□ 2.33
CD4-205ENST00000536563 EIF4G1Q04637 1599 aaKnown RBP29.08■■■□□ 2.25
CD4-205ENST00000536563 CC2D2AQ9P2K1 1620 aa28.98■■■□□ 2.23
CD4-205ENST00000536563 CECR2Q9BXF3 1484 aa28.85■■■□□ 2.21
CD4-205ENST00000536563 DNAJC5Q9H3Z4 198 aa28.78■■■□□ 2.2
CD4-205ENST00000536563 BAZ1AQ9NRL2 1556 aaPredicted RBP28.51■■■□□ 2.15
CD4-205ENST00000536563 SMARCA4P51532 1647 aa28.51■■■□□ 2.15
CD4-205ENST00000536563 NCAPD3P42695 1498 aa28.41■■■□□ 2.14
CD4-205ENST00000536563 ATAD2BQ9ULI0 1458 aa28.41■■■□□ 2.14
CD4-205ENST00000536563 SMARCA2P51531 1590 aa28.38■■■□□ 2.13
CD4-205ENST00000536563 MROH2BQ7Z745 1585 aa28.32■■■□□ 2.12
CD4-205ENST00000536563 HMGXB3Q12766 1538 aa28.23■■■□□ 2.11
CD4-205ENST00000536563 PEG3Q9GZU2 1588 aa28.22■■■□□ 2.11
CD4-205ENST00000536563 BAZ1BQ9UIG0 1483 aaKnown RBP28.2■■■□□ 2.1
CD4-205ENST00000536563 RSF1Q96T23 1441 aaPredicted RBP28.01■■■□□ 2.07
CD4-205ENST00000536563 WIZO95785 1651 aa27.98■■■□□ 2.07
CD4-205ENST00000536563 NESP48681 1621 aa27.72■■■□□ 2.03
CD4-205ENST00000536563 TOP2AP11388 1531 aaKnown RBP27.72■■■□□ 2.03
CD4-205ENST00000536563 ERCC6Q03468 1493 aa27.71■■■□□ 2.03
CD4-205ENST00000536563 LAMC3Q9Y6N6 1575 aa27.65■■■□□ 2.02
CD4-205ENST00000536563 CADPSQ9ULU8 1353 aa27.61■■■□□ 2.01
CD4-205ENST00000536563 PDS5BQ9NTI5 1447 aa27.54■■■□□ 2
CD4-205ENST00000536563 CCDC88BA6NC98 1476 aa27.42■■□□□ 1.98
CD4-205ENST00000536563 CFTRP13569 1480 aa27.4■■□□□ 1.98
CD4-205ENST00000536563 CUX2O14529 1486 aa27.39■■□□□ 1.98
CD4-205ENST00000536563 SUPT5HO00267 1087 aaKnown RBP27.36■■□□□ 1.97
CD4-205ENST00000536563 KIF21AQ7Z4S6 1674 aa27.33■■□□□ 1.97
CD4-205ENST00000536563 FANCD2Q9BXW9 1451 aa27.28■■□□□ 1.96
CD4-205ENST00000536563 THOC2Q8NI27 1593 aaKnown RBP27.26■■□□□ 1.95
CD4-205ENST00000536563 CEP164Q9UPV0 1460 aa27.25■■□□□ 1.95
CD4-205ENST00000536563 MRC2Q9UBG0 1479 aa27.22■■□□□ 1.95
CD4-205ENST00000536563 WDR62O43379 1518 aa27.08■■□□□ 1.93
CD4-205ENST00000536563 TRIM41Q8WV44 630 aa27.07■■□□□ 1.92
CD4-205ENST00000536563 PRDM2Q13029 1718 aa27.07■■□□□ 1.92
CD4-205ENST00000536563 URB2Q14146 1524 aaKnown RBP26.97■■□□□ 1.91
CD4-205ENST00000536563 ABCC8Q09428 1581 aa26.86■■□□□ 1.89
CD4-205ENST00000536563 TOPBP1Q92547 1522 aa26.81■■□□□ 1.88
CD4-205ENST00000536563 DNMBPQ6XZF7 1577 aa26.76■■□□□ 1.87
CD4-205ENST00000536563 IFT140Q96RY7 1462 aa26.69■■□□□ 1.86
CD4-205ENST00000536563 POLA1P09884 1462 aaPredicted RBP26.58■■□□□ 1.85
CD4-205ENST00000536563 CUX1P39880 1505 aa26.57■■□□□ 1.84
CD4-205ENST00000536563 ZNF608Q9ULD9 1512 aaPredicted RBP26.54■■□□□ 1.84
CD4-205ENST00000536563 SOGA1O94964 1423 aa26.53■■□□□ 1.84
CD4-205ENST00000536563 FGD5Q6ZNL6 1462 aa26.51■■□□□ 1.83
CD4-205ENST00000536563 RAD54L2Q9Y4B4 1467 aa26.48■■□□□ 1.83
CD4-205ENST00000536563 TARBP1Q13395 1621 aaKnown RBP26.47■■□□□ 1.83
CD4-205ENST00000536563 WRNQ14191 1432 aaPredicted RBP eCLIP26.43■■□□□ 1.82
CD4-205ENST00000536563 AQRO60306 1485 aaKnown RBP eCLIP26.42■■□□□ 1.82
CD4-205ENST00000536563 EIF4G3O43432 1585 aaKnown RBP26.39■■□□□ 1.82
CD4-205ENST00000536563 TDRD9Q8NDG6 1382 aaKnown RBP26.38■■□□□ 1.81
CD4-205ENST00000536563 OSCARQ8IYS5 282 aa26.35■■□□□ 1.81
CD4-205ENST00000536563 TOP2BQ02880 1626 aa26.32■■□□□ 1.8
CD4-205ENST00000536563 SYNJ1O43426 1573 aa26.29■■□□□ 1.8
CD4-205ENST00000536563 WDR97A6NE52 1622 aa26.29■■□□□ 1.8
CD4-205ENST00000536563 BIVM-ERCC5R4GMW8 1640 aa26.28■■□□□ 1.8
CD4-205ENST00000536563 ABCA10Q8WWZ4 1543 aa26.25■■□□□ 1.79
CD4-205ENST00000536563 FBLN2P98095 1184 aa26.21■■□□□ 1.79
CD4-205ENST00000536563 GRIN2BQ13224 1484 aa26.21■■□□□ 1.79
CD4-205ENST00000536563 GAPVD1Q14C86 1478 aa26.2■■□□□ 1.78
CD4-205ENST00000536563 SNAPC4Q5SXM2 1469 aa26.15■■□□□ 1.78
CD4-205ENST00000536563 MAGI1Q96QZ7 1491 aaPredicted RBP26.12■■□□□ 1.77
CD4-205ENST00000536563 CHMP7Q8WUX9 453 aaPredicted RBP26.12■■□□□ 1.77
CD4-205ENST00000536563 ABCA5Q8WWZ7 1642 aa26.1■■□□□ 1.77
CD4-205ENST00000536563 PBRM1Q86U86 1689 aa26.04■■□□□ 1.76
CD4-205ENST00000536563 CHD1O14646 1710 aa26.04■■□□□ 1.76
CD4-205ENST00000536563 SYNJ2O15056 1496 aa26.03■■□□□ 1.76
CD4-205ENST00000536563 ERICH3Q5RHP9 1530 aa25.94■■□□□ 1.74
CD4-205ENST00000536563 KIF27Q86VH2 1401 aa25.91■■□□□ 1.74
CD4-205ENST00000536563 FHAD1B1AJZ9 1412 aa25.9■■□□□ 1.74
CD4-205ENST00000536563 ADAMTS12P58397 1594 aa25.86■■□□□ 1.73
CD4-205ENST00000536563 GRIN2AQ12879 1464 aa25.84■■□□□ 1.73
CD4-205ENST00000536563 AEBP2Q6ZN18 517 aaPredicted RBP25.82■■□□□ 1.72
CD4-205ENST00000536563 ARHGEF11O15085 1522 aa25.81■■□□□ 1.72
CD4-205ENST00000536563 IGF1RP08069 1367 aa25.81■■□□□ 1.72
CD4-205ENST00000536563 CLASP1Q7Z460 1538 aa25.79■■□□□ 1.72
CD4-205ENST00000536563 RIMBP3CA6NJZ7 1639 aa25.79■■□□□ 1.72
CD4-205ENST00000536563 RIMBP3BA6NNM3 1639 aa25.79■■□□□ 1.72
CD4-205ENST00000536563 RIMBP3Q9UFD9 1639 aa25.79■■□□□ 1.72
CD4-205ENST00000536563 NUP160Q12769 1436 aa25.72■■□□□ 1.71
CD4-205ENST00000536563 CYB5RLQ6IPT4 315 aa25.68■■□□□ 1.7
CD4-205ENST00000536563 CEP170Q5SW79 1584 aa25.67■■□□□ 1.7
CD4-205ENST00000536563 CUL7Q14999 1698 aa25.67■■□□□ 1.7
CD4-205ENST00000536563 CARMIL1Q5VZK9 1371 aa25.67■■□□□ 1.7
CD4-205ENST00000536563 TRHP20396 242 aaPredicted RBP25.63■■□□□ 1.69
CD4-205ENST00000536563 RUSC2Q8N2Y8 1516 aa25.59■■□□□ 1.69
CD4-205ENST00000536563 ARAP1Q96P48 1450 aa25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms