RNA–Protein interactions for RNA: ENST00000536429.1

PRKDC-206, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 659 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-206ENST00000536429 NISCHQ9Y2I1 1504 aa32.22■■■□□ 2.75
PRKDC-206ENST00000536429 CCDC180Q9P1Z9 1646 aa28.58■■■□□ 2.17
PRKDC-206ENST00000536429 ABCC9O60706 1549 aa28.24■■■□□ 2.11
PRKDC-206ENST00000536429 DCAF8L2P0C7V8 631 aa27.04■■□□□ 1.92
PRKDC-206ENST00000536429 RB1CC1Q8TDY2 1594 aa27■■□□□ 1.91
PRKDC-206ENST00000536429 NACADO15069 1562 aa26.94■■□□□ 1.9
PRKDC-206ENST00000536429 ZCCHC6Q5VYS8 1495 aaKnown RBP26.82■■□□□ 1.88
PRKDC-206ENST00000536429 MYO15BQ96JP2 1530 aa26.74■■□□□ 1.87
PRKDC-206ENST00000536429 DCAF1Q9Y4B6 1507 aa26.6■■□□□ 1.85
PRKDC-206ENST00000536429 PABPN1Q86U42 306 aaKnown RBP eCLIP26.43■■□□□ 1.82
PRKDC-206ENST00000536429 UNC13AQ9UPW8 1703 aa26.36■■□□□ 1.81
PRKDC-206ENST00000536429 BICRAQ9NZM4 1560 aa26.26■■□□□ 1.79
PRKDC-206ENST00000536429 SCRIBQ14160 1630 aa26.19■■□□□ 1.78
PRKDC-206ENST00000536429 DNAJC5BQ9UF47 199 aa26.12■■□□□ 1.77
PRKDC-206ENST00000536429 SHROOM4Q9ULL8 1493 aa25.87■■□□□ 1.73
PRKDC-206ENST00000536429 EIF4G1Q04637 1599 aaKnown RBP25.56■■□□□ 1.68
PRKDC-206ENST00000536429 CC2D2AQ9P2K1 1620 aa25.48■■□□□ 1.67
PRKDC-206ENST00000536429 CECR2Q9BXF3 1484 aa25.36■■□□□ 1.65
PRKDC-206ENST00000536429 SMARCA4P51532 1647 aa25■■□□□ 1.59
PRKDC-206ENST00000536429 ATAD2BQ9ULI0 1458 aa24.95■■□□□ 1.58
PRKDC-206ENST00000536429 BAZ1AQ9NRL2 1556 aaPredicted RBP24.93■■□□□ 1.58
PRKDC-206ENST00000536429 NCAPD3P42695 1498 aa24.92■■□□□ 1.58
PRKDC-206ENST00000536429 MROH2BQ7Z745 1585 aa24.88■■□□□ 1.57
PRKDC-206ENST00000536429 SMARCA2P51531 1590 aa24.83■■□□□ 1.57
PRKDC-206ENST00000536429 HMGXB3Q12766 1538 aa24.74■■□□□ 1.55
PRKDC-206ENST00000536429 PEG3Q9GZU2 1588 aa24.74■■□□□ 1.55
PRKDC-206ENST00000536429 BAZ1BQ9UIG0 1483 aaKnown RBP24.7■■□□□ 1.54
PRKDC-206ENST00000536429 RSF1Q96T23 1441 aaPredicted RBP24.56■■□□□ 1.52
PRKDC-206ENST00000536429 WIZO95785 1651 aa24.56■■□□□ 1.52
PRKDC-206ENST00000536429 NESP48681 1621 aa24.43■■□□□ 1.5
PRKDC-206ENST00000536429 ERCC6Q03468 1493 aa24.3■■□□□ 1.48
PRKDC-206ENST00000536429 TOP2AP11388 1531 aaKnown RBP24.28■■□□□ 1.48
PRKDC-206ENST00000536429 LAMC3Q9Y6N6 1575 aa24.21■■□□□ 1.47
PRKDC-206ENST00000536429 CADPSQ9ULU8 1353 aa24.21■■□□□ 1.47
PRKDC-206ENST00000536429 PDS5BQ9NTI5 1447 aa24.1■■□□□ 1.45
PRKDC-206ENST00000536429 CUX2O14529 1486 aa24.05■■□□□ 1.44
PRKDC-206ENST00000536429 CCDC88BA6NC98 1476 aa24.04■■□□□ 1.44
PRKDC-206ENST00000536429 CFTRP13569 1480 aa24.03■■□□□ 1.44
PRKDC-206ENST00000536429 KIF21AQ7Z4S6 1674 aa24.02■■□□□ 1.44
PRKDC-206ENST00000536429 THOC2Q8NI27 1593 aaKnown RBP23.99■■□□□ 1.43
PRKDC-206ENST00000536429 FANCD2Q9BXW9 1451 aa23.93■■□□□ 1.42
PRKDC-206ENST00000536429 SUPT5HO00267 1087 aaKnown RBP23.88■■□□□ 1.41
PRKDC-206ENST00000536429 MRC2Q9UBG0 1479 aa23.87■■□□□ 1.41
PRKDC-206ENST00000536429 CEP164Q9UPV0 1460 aa23.87■■□□□ 1.41
PRKDC-206ENST00000536429 WDR62O43379 1518 aa23.79■■□□□ 1.4
PRKDC-206ENST00000536429 URB2Q14146 1524 aaKnown RBP23.72■■□□□ 1.39
PRKDC-206ENST00000536429 PRDM2Q13029 1718 aa23.67■■□□□ 1.38
PRKDC-206ENST00000536429 TOPBP1Q92547 1522 aa23.53■■□□□ 1.36
PRKDC-206ENST00000536429 DNAJC5Q9H3Z4 198 aa23.52■■□□□ 1.36
PRKDC-206ENST00000536429 DNMBPQ6XZF7 1577 aa23.45■■□□□ 1.34
PRKDC-206ENST00000536429 ABCC8Q09428 1581 aa23.43■■□□□ 1.34
PRKDC-206ENST00000536429 IFT140Q96RY7 1462 aa23.39■■□□□ 1.34
PRKDC-206ENST00000536429 ZNF608Q9ULD9 1512 aaPredicted RBP23.37■■□□□ 1.33
PRKDC-206ENST00000536429 POLA1P09884 1462 aaPredicted RBP23.34■■□□□ 1.33
PRKDC-206ENST00000536429 CUX1P39880 1505 aa23.33■■□□□ 1.33
PRKDC-206ENST00000536429 RAD54L2Q9Y4B4 1467 aa23.28■■□□□ 1.32
PRKDC-206ENST00000536429 FGD5Q6ZNL6 1462 aa23.26■■□□□ 1.31
PRKDC-206ENST00000536429 TARBP1Q13395 1621 aaKnown RBP23.26■■□□□ 1.31
PRKDC-206ENST00000536429 SOGA1O94964 1423 aa23.23■■□□□ 1.31
PRKDC-206ENST00000536429 AQRO60306 1485 aaKnown RBP eCLIP23.22■■□□□ 1.31
PRKDC-206ENST00000536429 EIF4G3O43432 1585 aaKnown RBP23.18■■□□□ 1.3
PRKDC-206ENST00000536429 TDRD9Q8NDG6 1382 aaKnown RBP23.16■■□□□ 1.3
PRKDC-206ENST00000536429 WRNQ14191 1432 aaPredicted RBP eCLIP23.12■■□□□ 1.29
PRKDC-206ENST00000536429 OSCARQ8IYS5 282 aa23.08■■□□□ 1.29
PRKDC-206ENST00000536429 SYNJ1O43426 1573 aa23.08■■□□□ 1.29
PRKDC-206ENST00000536429 TOP2BQ02880 1626 aa23.04■■□□□ 1.28
PRKDC-206ENST00000536429 ABCA10Q8WWZ4 1543 aa23.01■■□□□ 1.27
PRKDC-206ENST00000536429 BIVM-ERCC5R4GMW8 1640 aa23■■□□□ 1.27
PRKDC-206ENST00000536429 WDR97A6NE52 1622 aa23■■□□□ 1.27
PRKDC-206ENST00000536429 SNAPC4Q5SXM2 1469 aa22.98■■□□□ 1.27
PRKDC-206ENST00000536429 FBLN2P98095 1184 aa22.95■■□□□ 1.26
PRKDC-206ENST00000536429 GRIN2BQ13224 1484 aa22.95■■□□□ 1.26
PRKDC-206ENST00000536429 GAPVD1Q14C86 1478 aa22.94■■□□□ 1.26
PRKDC-206ENST00000536429 ABCA5Q8WWZ7 1642 aa22.9■■□□□ 1.26
PRKDC-206ENST00000536429 MAGI1Q96QZ7 1491 aaPredicted RBP22.88■■□□□ 1.25
PRKDC-206ENST00000536429 CHD1O14646 1710 aa22.88■■□□□ 1.25
PRKDC-206ENST00000536429 CHMP7Q8WUX9 453 aaPredicted RBP22.84■■□□□ 1.25
PRKDC-206ENST00000536429 PBRM1Q86U86 1689 aa22.82■■□□□ 1.24
PRKDC-206ENST00000536429 SYNJ2O15056 1496 aa22.81■■□□□ 1.24
PRKDC-206ENST00000536429 TRIM41Q8WV44 630 aa22.74■■□□□ 1.23
PRKDC-206ENST00000536429 ARHGEF11O15085 1522 aa22.71■■□□□ 1.23
PRKDC-206ENST00000536429 ADAMTS12P58397 1594 aa22.71■■□□□ 1.23
PRKDC-206ENST00000536429 RIMBP3CA6NJZ7 1639 aa22.7■■□□□ 1.22
PRKDC-206ENST00000536429 RIMBP3BA6NNM3 1639 aa22.7■■□□□ 1.22
PRKDC-206ENST00000536429 RIMBP3Q9UFD9 1639 aa22.7■■□□□ 1.22
PRKDC-206ENST00000536429 ERICH3Q5RHP9 1530 aa22.69■■□□□ 1.22
PRKDC-206ENST00000536429 CLASP1Q7Z460 1538 aa22.68■■□□□ 1.22
PRKDC-206ENST00000536429 FHAD1B1AJZ9 1412 aa22.67■■□□□ 1.22
PRKDC-206ENST00000536429 GRIN2AQ12879 1464 aa22.66■■□□□ 1.22
PRKDC-206ENST00000536429 KIF27Q86VH2 1401 aa22.63■■□□□ 1.21
PRKDC-206ENST00000536429 IGF1RP08069 1367 aa22.61■■□□□ 1.21
PRKDC-206ENST00000536429 NUP160Q12769 1436 aa22.58■■□□□ 1.21
PRKDC-206ENST00000536429 CEP170Q5SW79 1584 aa22.57■■□□□ 1.2
PRKDC-206ENST00000536429 ARAP1Q96P48 1450 aa22.55■■□□□ 1.2
PRKDC-206ENST00000536429 CYB5RLQ6IPT4 315 aa22.55■■□□□ 1.2
PRKDC-206ENST00000536429 RUSC2Q8N2Y8 1516 aa22.49■■□□□ 1.19
PRKDC-206ENST00000536429 CARMIL1Q5VZK9 1371 aa22.45■■□□□ 1.18
PRKDC-206ENST00000536429 ERCC6L2Q5T890 1561 aa22.43■■□□□ 1.18
PRKDC-206ENST00000536429 CUL7Q14999 1698 aa22.42■■□□□ 1.18
PRKDC-206ENST00000536429 JPH4Q96JJ6 628 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms