RNA–Protein interactions for RNA: ENST00000536000.1

VPS37C-203, Transcript of VPS37C, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS37C, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS37C-203ENST00000536000 NISCHQ9Y2I1 1504 aa30.81■■■□□ 2.52
VPS37C-203ENST00000536000 CCDC180Q9P1Z9 1646 aa27.34■■□□□ 1.97
VPS37C-203ENST00000536000 ABCC9O60706 1549 aa26.95■■□□□ 1.9
VPS37C-203ENST00000536000 DCAF8L2P0C7V8 631 aa26.01■■□□□ 1.75
VPS37C-203ENST00000536000 RB1CC1Q8TDY2 1594 aa25.84■■□□□ 1.73
VPS37C-203ENST00000536000 NACADO15069 1562 aa25.79■■□□□ 1.72
VPS37C-203ENST00000536000 ZCCHC6Q5VYS8 1495 aaKnown RBP25.6■■□□□ 1.69
VPS37C-203ENST00000536000 MYO15BQ96JP2 1530 aa25.59■■□□□ 1.69
VPS37C-203ENST00000536000 DCAF1Q9Y4B6 1507 aa25.45■■□□□ 1.66
VPS37C-203ENST00000536000 PABPN1Q86U42 306 aaKnown RBP eCLIP25.26■■□□□ 1.63
VPS37C-203ENST00000536000 UNC13AQ9UPW8 1703 aa25.17■■□□□ 1.62
VPS37C-203ENST00000536000 BICRAQ9NZM4 1560 aa25.02■■□□□ 1.6
VPS37C-203ENST00000536000 SCRIBQ14160 1630 aa24.99■■□□□ 1.59
VPS37C-203ENST00000536000 DNAJC5BQ9UF47 199 aa24.86■■□□□ 1.57
VPS37C-203ENST00000536000 SHROOM4Q9ULL8 1493 aa24.74■■□□□ 1.55
VPS37C-203ENST00000536000 EIF4G1Q04637 1599 aaKnown RBP24.38■■□□□ 1.49
VPS37C-203ENST00000536000 CC2D2AQ9P2K1 1620 aa24.32■■□□□ 1.48
VPS37C-203ENST00000536000 CECR2Q9BXF3 1484 aa24.21■■□□□ 1.47
VPS37C-203ENST00000536000 SMARCA4P51532 1647 aa23.88■■□□□ 1.41
VPS37C-203ENST00000536000 BAZ1AQ9NRL2 1556 aaPredicted RBP23.88■■□□□ 1.41
VPS37C-203ENST00000536000 NCAPD3P42695 1498 aa23.84■■□□□ 1.41
VPS37C-203ENST00000536000 ATAD2BQ9ULI0 1458 aa23.83■■□□□ 1.41
VPS37C-203ENST00000536000 SMARCA2P51531 1590 aa23.78■■□□□ 1.4
VPS37C-203ENST00000536000 MROH2BQ7Z745 1585 aa23.74■■□□□ 1.39
VPS37C-203ENST00000536000 HMGXB3Q12766 1538 aa23.64■■□□□ 1.37
VPS37C-203ENST00000536000 BAZ1BQ9UIG0 1483 aaKnown RBP23.63■■□□□ 1.37
VPS37C-203ENST00000536000 PEG3Q9GZU2 1588 aa23.63■■□□□ 1.37
VPS37C-203ENST00000536000 RSF1Q96T23 1441 aaPredicted RBP23.48■■□□□ 1.35
VPS37C-203ENST00000536000 WIZO95785 1651 aa23.48■■□□□ 1.35
VPS37C-203ENST00000536000 NESP48681 1621 aa23.28■■□□□ 1.32
VPS37C-203ENST00000536000 ERCC6Q03468 1493 aa23.24■■□□□ 1.31
VPS37C-203ENST00000536000 TOP2AP11388 1531 aaKnown RBP23.2■■□□□ 1.3
VPS37C-203ENST00000536000 CADPSQ9ULU8 1353 aa23.18■■□□□ 1.3
VPS37C-203ENST00000536000 LAMC3Q9Y6N6 1575 aa23.18■■□□□ 1.3
VPS37C-203ENST00000536000 PDS5BQ9NTI5 1447 aa23.1■■□□□ 1.29
VPS37C-203ENST00000536000 CCDC88BA6NC98 1476 aa23■■□□□ 1.27
VPS37C-203ENST00000536000 SUPT5HO00267 1087 aaKnown RBP22.98■■□□□ 1.27
VPS37C-203ENST00000536000 CUX2O14529 1486 aa22.98■■□□□ 1.27
VPS37C-203ENST00000536000 CFTRP13569 1480 aa22.97■■□□□ 1.27
VPS37C-203ENST00000536000 KIF21AQ7Z4S6 1674 aa22.93■■□□□ 1.26
VPS37C-203ENST00000536000 FANCD2Q9BXW9 1451 aa22.87■■□□□ 1.25
VPS37C-203ENST00000536000 THOC2Q8NI27 1593 aaKnown RBP22.84■■□□□ 1.25
VPS37C-203ENST00000536000 CEP164Q9UPV0 1460 aa22.84■■□□□ 1.25
VPS37C-203ENST00000536000 MRC2Q9UBG0 1479 aa22.81■■□□□ 1.24
VPS37C-203ENST00000536000 WDR62O43379 1518 aa22.69■■□□□ 1.22
VPS37C-203ENST00000536000 PRDM2Q13029 1718 aa22.68■■□□□ 1.22
VPS37C-203ENST00000536000 URB2Q14146 1524 aaKnown RBP22.62■■□□□ 1.21
VPS37C-203ENST00000536000 ABCC8Q09428 1581 aa22.51■■□□□ 1.19
VPS37C-203ENST00000536000 TOPBP1Q92547 1522 aa22.48■■□□□ 1.19
VPS37C-203ENST00000536000 DNAJC5Q9H3Z4 198 aa22.47■■□□□ 1.19
VPS37C-203ENST00000536000 DNMBPQ6XZF7 1577 aa22.42■■□□□ 1.18
VPS37C-203ENST00000536000 IFT140Q96RY7 1462 aa22.37■■□□□ 1.17
VPS37C-203ENST00000536000 POLA1P09884 1462 aaPredicted RBP22.28■■□□□ 1.16
VPS37C-203ENST00000536000 SOGA1O94964 1423 aa22.27■■□□□ 1.16
VPS37C-203ENST00000536000 CUX1P39880 1505 aa22.26■■□□□ 1.15
VPS37C-203ENST00000536000 ZNF608Q9ULD9 1512 aaPredicted RBP22.26■■□□□ 1.15
VPS37C-203ENST00000536000 FGD5Q6ZNL6 1462 aa22.22■■□□□ 1.15
VPS37C-203ENST00000536000 RAD54L2Q9Y4B4 1467 aa22.22■■□□□ 1.15
VPS37C-203ENST00000536000 TARBP1Q13395 1621 aaKnown RBP22.19■■□□□ 1.14
VPS37C-203ENST00000536000 AQRO60306 1485 aaKnown RBP eCLIP22.18■■□□□ 1.141e-7■■■■■ 29.4
VPS37C-203ENST00000536000 TDRD9Q8NDG6 1382 aaKnown RBP22.16■■□□□ 1.14
VPS37C-203ENST00000536000 OSCARQ8IYS5 282 aa22.16■■□□□ 1.14
VPS37C-203ENST00000536000 WRNQ14191 1432 aaPredicted RBP eCLIP22.15■■□□□ 1.14
VPS37C-203ENST00000536000 EIF4G3O43432 1585 aaKnown RBP22.1■■□□□ 1.13
VPS37C-203ENST00000536000 FBLN2P98095 1184 aa22.04■■□□□ 1.12
VPS37C-203ENST00000536000 TOP2BQ02880 1626 aa22.04■■□□□ 1.12
VPS37C-203ENST00000536000 SYNJ1O43426 1573 aa22.02■■□□□ 1.12
VPS37C-203ENST00000536000 BIVM-ERCC5R4GMW8 1640 aa22.01■■□□□ 1.11
VPS37C-203ENST00000536000 WDR97A6NE52 1622 aa22■■□□□ 1.11
VPS37C-203ENST00000536000 ABCA10Q8WWZ4 1543 aa22■■□□□ 1.11
VPS37C-203ENST00000536000 GAPVD1Q14C86 1478 aa21.97■■□□□ 1.11
VPS37C-203ENST00000536000 GRIN2BQ13224 1484 aa21.96■■□□□ 1.11
VPS37C-203ENST00000536000 CHMP7Q8WUX9 453 aaPredicted RBP21.95■■□□□ 1.1
VPS37C-203ENST00000536000 SNAPC4Q5SXM2 1469 aa21.92■■□□□ 1.1
VPS37C-203ENST00000536000 MAGI1Q96QZ7 1491 aaPredicted RBP21.89■■□□□ 1.09
VPS37C-203ENST00000536000 CHD1O14646 1710 aa21.86■■□□□ 1.09
VPS37C-203ENST00000536000 ABCA5Q8WWZ7 1642 aa21.85■■□□□ 1.09
VPS37C-203ENST00000536000 PBRM1Q86U86 1689 aa21.82■■□□□ 1.08
VPS37C-203ENST00000536000 SYNJ2O15056 1496 aa21.82■■□□□ 1.08
VPS37C-203ENST00000536000 TRIM41Q8WV44 630 aa21.74■■□□□ 1.07
VPS37C-203ENST00000536000 ERICH3Q5RHP9 1530 aa21.73■■□□□ 1.07
VPS37C-203ENST00000536000 FHAD1B1AJZ9 1412 aa21.72■■□□□ 1.07
VPS37C-203ENST00000536000 KIF27Q86VH2 1401 aa21.72■■□□□ 1.07
VPS37C-203ENST00000536000 GRIN2AQ12879 1464 aa21.66■■□□□ 1.06
VPS37C-203ENST00000536000 IGF1RP08069 1367 aa21.66■■□□□ 1.06
VPS37C-203ENST00000536000 ADAMTS12P58397 1594 aa21.65■■□□□ 1.06
VPS37C-203ENST00000536000 ARHGEF11O15085 1522 aa21.65■■□□□ 1.06
VPS37C-203ENST00000536000 RIMBP3CA6NJZ7 1639 aa21.65■■□□□ 1.06
VPS37C-203ENST00000536000 RIMBP3BA6NNM3 1639 aa21.65■■□□□ 1.06
VPS37C-203ENST00000536000 RIMBP3Q9UFD9 1639 aa21.65■■□□□ 1.06
VPS37C-203ENST00000536000 CLASP1Q7Z460 1538 aa21.61■■□□□ 1.05
VPS37C-203ENST00000536000 CYB5RLQ6IPT4 315 aa21.61■■□□□ 1.05
VPS37C-203ENST00000536000 NUP160Q12769 1436 aa21.56■■□□□ 1.04
VPS37C-203ENST00000536000 CARMIL1Q5VZK9 1371 aa21.54■■□□□ 1.04
VPS37C-203ENST00000536000 CEP170Q5SW79 1584 aa21.52■■□□□ 1.04
VPS37C-203ENST00000536000 CUL7Q14999 1698 aa21.48■■□□□ 1.03
VPS37C-203ENST00000536000 JPH4Q96JJ6 628 aa21.48■■□□□ 1.03
VPS37C-203ENST00000536000 RUSC2Q8N2Y8 1516 aa21.48■■□□□ 1.03
VPS37C-203ENST00000536000 ARAP1Q96P48 1450 aa21.47■■□□□ 1.03
VPS37C-203ENST00000536000 KIAA0586Q9BVV6 1533 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms