RNA–Protein interactions for RNA: ENST00000535941.5

COL21A1-212, Transcript of collagen type XXI alpha 1 chain, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene COL21A1, Length 3,369 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1-212ENST00000535941 NISCHQ9Y2I1 1504 aa18.7■□□□□ 0.58
COL21A1-212ENST00000535941 CCDC180Q9P1Z9 1646 aa16.55■□□□□ 0.24
COL21A1-212ENST00000535941 ZCCHC6Q5VYS8 1495 aaKnown RBP15.81■□□□□ 0.12
COL21A1-212ENST00000535941 DCAF1Q9Y4B6 1507 aa15.69■□□□□ 0.1
COL21A1-212ENST00000535941 MYO15BQ96JP2 1530 aa15.5■□□□□ 0.07
COL21A1-212ENST00000535941 NACADO15069 1562 aa15.2■□□□□ 0.02
COL21A1-212ENST00000535941 ABCC9O60706 1549 aa15□□□□□ -0.01
COL21A1-212ENST00000535941 UNC13AQ9UPW8 1703 aa15□□□□□ -0.01
COL21A1-212ENST00000535941 RB1CC1Q8TDY2 1594 aa14.98□□□□□ -0.01
COL21A1-212ENST00000535941 SCRIBQ14160 1630 aa14.87□□□□□ -0.03
COL21A1-212ENST00000535941 SHROOM4Q9ULL8 1493 aa14.75□□□□□ -0.05
COL21A1-212ENST00000535941 BICRAQ9NZM4 1560 aa14.69□□□□□ -0.06
COL21A1-212ENST00000535941 DCAF8L2P0C7V8 631 aa14.57□□□□□ -0.08
COL21A1-212ENST00000535941 RSF1Q96T23 1441 aaPredicted RBP14.44□□□□□ -0.1
COL21A1-212ENST00000535941 SMARCA4P51532 1647 aa14.43□□□□□ -0.1
COL21A1-212ENST00000535941 BAZ1AQ9NRL2 1556 aaPredicted RBP14.42□□□□□ -0.1
COL21A1-212ENST00000535941 PEG3Q9GZU2 1588 aa14.42□□□□□ -0.1
COL21A1-212ENST00000535941 MROH2BQ7Z745 1585 aa14.4□□□□□ -0.1
COL21A1-212ENST00000535941 CECR2Q9BXF3 1484 aa14.4□□□□□ -0.1
COL21A1-212ENST00000535941 WIZO95785 1651 aa14.34□□□□□ -0.11
COL21A1-212ENST00000535941 EIF4G1Q04637 1599 aaKnown RBP14.28□□□□□ -0.12
COL21A1-212ENST00000535941 TOP2AP11388 1531 aaKnown RBP14.24□□□□□ -0.13
COL21A1-212ENST00000535941 SMARCA2P51531 1590 aa14.12□□□□□ -0.15
COL21A1-212ENST00000535941 SUPT5HO00267 1087 aaKnown RBP14.11□□□□□ -0.15
COL21A1-212ENST00000535941 HMGXB3Q12766 1538 aa14.07□□□□□ -0.16
COL21A1-212ENST00000535941 ATAD2BQ9ULI0 1458 aa14.04□□□□□ -0.16
COL21A1-212ENST00000535941 PRDM2Q13029 1718 aa13.98□□□□□ -0.17
COL21A1-212ENST00000535941 PABPN1Q86U42 306 aaKnown RBP eCLIP13.96□□□□□ -0.17
COL21A1-212ENST00000535941 NCAPD3P42695 1498 aa13.96□□□□□ -0.18
COL21A1-212ENST00000535941 CCDC88BA6NC98 1476 aa13.95□□□□□ -0.18
COL21A1-212ENST00000535941 BAZ1BQ9UIG0 1483 aaKnown RBP13.87□□□□□ -0.19
COL21A1-212ENST00000535941 CC2D2AQ9P2K1 1620 aa13.85□□□□□ -0.19
COL21A1-212ENST00000535941 CHIC1Q5VXU3 224 aa13.84□□□□□ -0.19
COL21A1-212ENST00000535941 BIVM-ERCC5R4GMW8 1640 aa13.73□□□□□ -0.21
COL21A1-212ENST00000535941 CFTRP13569 1480 aa13.66□□□□□ -0.22
COL21A1-212ENST00000535941 ABCC8Q09428 1581 aa13.65□□□□□ -0.22
COL21A1-212ENST00000535941 SYNJ1O43426 1573 aa13.64□□□□□ -0.23
COL21A1-212ENST00000535941 TOP2BQ02880 1626 aa13.63□□□□□ -0.23
COL21A1-212ENST00000535941 LAMC3Q9Y6N6 1575 aa13.53□□□□□ -0.24
COL21A1-212ENST00000535941 CUX1P39880 1505 aa13.49□□□□□ -0.25
COL21A1-212ENST00000535941 WRNQ14191 1432 aaPredicted RBP eCLIP13.49□□□□□ -0.25
COL21A1-212ENST00000535941 WDR97A6NE52 1622 aa13.47□□□□□ -0.25
COL21A1-212ENST00000535941 CADPSQ9ULU8 1353 aa13.45□□□□□ -0.26
COL21A1-212ENST00000535941 KIF21BO75037 1637 aa13.43□□□□□ -0.26
COL21A1-212ENST00000535941 EEA1Q15075 1411 aa13.43□□□□□ -0.26
COL21A1-212ENST00000535941 KIF21AQ7Z4S6 1674 aa13.41□□□□□ -0.26
COL21A1-212ENST00000535941 DNMBPQ6XZF7 1577 aa13.39□□□□□ -0.27
COL21A1-212ENST00000535941 TRIM41Q8WV44 630 aa13.36□□□□□ -0.27
COL21A1-212ENST00000535941 SOGA1O94964 1423 aa13.32□□□□□ -0.28
COL21A1-212ENST00000535941 FANCD2Q9BXW9 1451 aa13.32□□□□□ -0.28
COL21A1-212ENST00000535941 RUSC2Q8N2Y8 1516 aa13.32□□□□□ -0.28
COL21A1-212ENST00000535941 NESP48681 1621 aa13.31□□□□□ -0.28
COL21A1-212ENST00000535941 ERICH3Q5RHP9 1530 aa13.29□□□□□ -0.28
COL21A1-212ENST00000535941 TOPBP1Q92547 1522 aa13.27□□□□□ -0.29
COL21A1-212ENST00000535941 URB2Q14146 1524 aaKnown RBP13.26□□□□□ -0.29
COL21A1-212ENST00000535941 ABCA5Q8WWZ7 1642 aa13.26□□□□□ -0.29
COL21A1-212ENST00000535941 TARBP1Q13395 1621 aaKnown RBP13.25□□□□□ -0.29
COL21A1-212ENST00000535941 PRXQ9BXM0 1461 aa13.23□□□□□ -0.29
COL21A1-212ENST00000535941 FGD5Q6ZNL6 1462 aa13.23□□□□□ -0.29
COL21A1-212ENST00000535941 CEP164Q9UPV0 1460 aa13.23□□□□□ -0.29
COL21A1-212ENST00000535941 ABCA10Q8WWZ4 1543 aa13.23□□□□□ -0.29
COL21A1-212ENST00000535941 THOC2Q8NI27 1593 aaKnown RBP13.22□□□□□ -0.29
COL21A1-212ENST00000535941 WDR62O43379 1518 aa13.22□□□□□ -0.29
COL21A1-212ENST00000535941 POLA1P09884 1462 aaPredicted RBP13.19□□□□□ -0.3
COL21A1-212ENST00000535941 CUL7Q14999 1698 aa13.18□□□□□ -0.3
COL21A1-212ENST00000535941 DNAJC5BQ9UF47 199 aa13.18□□□□□ -0.3
COL21A1-212ENST00000535941 GOLGA3Q08378 1498 aa13.18□□□□□ -0.3
COL21A1-212ENST00000535941 PDS5BQ9NTI5 1447 aa13.17□□□□□ -0.3
COL21A1-212ENST00000535941 PBRM1Q86U86 1689 aa13.16□□□□□ -0.3
COL21A1-212ENST00000535941 TNIKQ9UKE5 1360 aa13.15□□□□□ -0.3
COL21A1-212ENST00000535941 LOC105371045A0A1W2PR82 267 aa13.14□□□□□ -0.31
COL21A1-212ENST00000535941 MRC2Q9UBG0 1479 aa13.12□□□□□ -0.31
COL21A1-212ENST00000535941 CTTNBP2Q8WZ74 1663 aa13.11□□□□□ -0.31
COL21A1-212ENST00000535941 KIF27Q86VH2 1401 aa13.1□□□□□ -0.31
COL21A1-212ENST00000535941 RAPGEF2Q9Y4G8 1499 aa13.1□□□□□ -0.31
COL21A1-212ENST00000535941 CSRNP3Q8WYN3 585 aa13.08□□□□□ -0.32
COL21A1-212ENST00000535941 CUX2O14529 1486 aa13.07□□□□□ -0.32
COL21A1-212ENST00000535941 CEP162Q5TB80 1403 aa13.04□□□□□ -0.32
COL21A1-212ENST00000535941 RAD54L2Q9Y4B4 1467 aa13.04□□□□□ -0.32
COL21A1-212ENST00000535941 IGF1RP08069 1367 aa13.03□□□□□ -0.32
COL21A1-212ENST00000535941 ADAMTS12P58397 1594 aa13.01□□□□□ -0.33
COL21A1-212ENST00000535941 EIF4G3O43432 1585 aaKnown RBP12.97□□□□□ -0.33
COL21A1-212ENST00000535941 IFT140Q96RY7 1462 aa12.96□□□□□ -0.33
COL21A1-212ENST00000535941 SAMD9Q5K651 1589 aa12.96□□□□□ -0.33
COL21A1-212ENST00000535941 ARAP1Q96P48 1450 aa12.95□□□□□ -0.34
COL21A1-212ENST00000535941 FAM9AQ8IZU1 332 aaPredicted RBP12.93□□□□□ -0.34
COL21A1-212ENST00000535941 GAPVD1Q14C86 1478 aa12.92□□□□□ -0.34
COL21A1-212ENST00000535941 EFCAB5A4FU69 1503 aa12.9□□□□□ -0.34
COL21A1-212ENST00000535941 CFAP43Q8NDM7 1665 aa12.89□□□□□ -0.35
COL21A1-212ENST00000535941 ARHGAP35Q9NRY4 1499 aa12.89□□□□□ -0.35
COL21A1-212ENST00000535941 LRRIQ1Q96JM4 1722 aa12.88□□□□□ -0.35
COL21A1-212ENST00000535941 VPS8Q8N3P4 1428 aa12.87□□□□□ -0.35
COL21A1-212ENST00000535941 CARMIL1Q5VZK9 1371 aa12.87□□□□□ -0.35
COL21A1-212ENST00000535941 CLIP1P30622 1438 aa12.87□□□□□ -0.35
COL21A1-212ENST00000535941 MAP3K1Q13233 1512 aa12.86□□□□□ -0.35
COL21A1-212ENST00000535941 GRIN2BQ13224 1484 aa12.84□□□□□ -0.35
COL21A1-212ENST00000535941 ZNF608Q9ULD9 1512 aaPredicted RBP12.83□□□□□ -0.36
COL21A1-212ENST00000535941 FHAD1B1AJZ9 1412 aa12.81□□□□□ -0.36
COL21A1-212ENST00000535941 MAGI1Q96QZ7 1491 aaPredicted RBP12.81□□□□□ -0.36
COL21A1-212ENST00000535941 AQRO60306 1485 aaKnown RBP eCLIP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms