RNA–Protein interactions for RNA: ENST00000535731.1

LRP6-202, Transcript of LDL receptor related protein 6, humanhuman

TSL 3

Gene LRP6, Length 562 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP6-202ENST00000535731 NISCHQ9Y2I1 1504 aa49.67■■■■■ 5.54
LRP6-202ENST00000535731 ABCC9O60706 1549 aa45.52■■■■■ 4.88
LRP6-202ENST00000535731 CCDC180Q9P1Z9 1646 aa44.75■■■■■ 4.75
LRP6-202ENST00000535731 DNAJC5BQ9UF47 199 aa43.42■■■■■ 4.54
LRP6-202ENST00000535731 RB1CC1Q8TDY2 1594 aa43.01■■■■■ 4.48
LRP6-202ENST00000535731 NACADO15069 1562 aa42.57■■■■■ 4.41
LRP6-202ENST00000535731 DCAF8L2P0C7V8 631 aa42.38■■■■■ 4.37
LRP6-202ENST00000535731 PABPN1Q86U42 306 aaKnown RBP eCLIP42.37■■■■■ 4.37
LRP6-202ENST00000535731 UNC13AQ9UPW8 1703 aa41.87■■■■■ 4.29
LRP6-202ENST00000535731 MYO15BQ96JP2 1530 aa41.79■■■■■ 4.28
LRP6-202ENST00000535731 BICRAQ9NZM4 1560 aa41.76■■■■■ 4.27
LRP6-202ENST00000535731 SHROOM4Q9ULL8 1493 aa41.17■■■■■ 4.18
LRP6-202ENST00000535731 CECR2Q9BXF3 1484 aa41.1■■■■■ 4.17
LRP6-202ENST00000535731 CC2D2AQ9P2K1 1620 aa41.04■■■■■ 4.16
LRP6-202ENST00000535731 DCAF1Q9Y4B6 1507 aa40.99■■■■■ 4.15
LRP6-202ENST00000535731 ZCCHC6Q5VYS8 1495 aaKnown RBP40.97■■■■■ 4.15
LRP6-202ENST00000535731 EIF4G1Q04637 1599 aaKnown RBP40.79■■■■■ 4.12
LRP6-202ENST00000535731 SCRIBQ14160 1630 aa40.75■■■■■ 4.11
LRP6-202ENST00000535731 DNAJC5Q9H3Z4 198 aa40.42■■■■■ 4.06
LRP6-202ENST00000535731 CUX2O14529 1486 aa39.55■■■■□ 3.92
LRP6-202ENST00000535731 NCAPD3P42695 1498 aa39.37■■■■□ 3.89
LRP6-202ENST00000535731 ERCC6Q03468 1493 aa39.37■■■■□ 3.89
LRP6-202ENST00000535731 ATAD2BQ9ULI0 1458 aa39.13■■■■□ 3.85
LRP6-202ENST00000535731 SMARCA2P51531 1590 aa38.95■■■■□ 3.83
LRP6-202ENST00000535731 HMGXB3Q12766 1538 aa38.93■■■■□ 3.82
LRP6-202ENST00000535731 NESP48681 1621 aa38.9■■■■□ 3.82
LRP6-202ENST00000535731 SMARCA4P51532 1647 aa38.82■■■■□ 3.81
LRP6-202ENST00000535731 BAZ1BQ9UIG0 1483 aaKnown RBP38.68■■■■□ 3.78
LRP6-202ENST00000535731 BAZ1AQ9NRL2 1556 aaPredicted RBP38.58■■■■□ 3.77
LRP6-202ENST00000535731 THOC2Q8NI27 1593 aaKnown RBP38.56■■■■□ 3.76
LRP6-202ENST00000535731 LAMC3Q9Y6N6 1575 aa38.52■■■■□ 3.76
LRP6-202ENST00000535731 PEG3Q9GZU2 1588 aa38.48■■■■□ 3.75
LRP6-202ENST00000535731 PDS5BQ9NTI5 1447 aa38.41■■■■□ 3.74
LRP6-202ENST00000535731 TRIM41Q8WV44 630 aa38.32■■■■□ 3.72
LRP6-202ENST00000535731 KIF21AQ7Z4S6 1674 aa38.26■■■■□ 3.71
LRP6-202ENST00000535731 MROH2BQ7Z745 1585 aa38.25■■■■□ 3.71
LRP6-202ENST00000535731 CADPSQ9ULU8 1353 aa38.18■■■■□ 3.7
LRP6-202ENST00000535731 MRC2Q9UBG0 1479 aa38.04■■■■□ 3.68
LRP6-202ENST00000535731 WDR62O43379 1518 aa37.93■■■■□ 3.66
LRP6-202ENST00000535731 OSCARQ8IYS5 282 aa37.76■■■■□ 3.64
LRP6-202ENST00000535731 CEP164Q9UPV0 1460 aa37.76■■■■□ 3.63
LRP6-202ENST00000535731 WIZO95785 1651 aa37.69■■■■□ 3.62
LRP6-202ENST00000535731 FANCD2Q9BXW9 1451 aa37.67■■■■□ 3.62
LRP6-202ENST00000535731 CFTRP13569 1480 aa37.55■■■■□ 3.6
LRP6-202ENST00000535731 URB2Q14146 1524 aaKnown RBP37.38■■■■□ 3.57
LRP6-202ENST00000535731 RSF1Q96T23 1441 aaPredicted RBP37.27■■■■□ 3.56
LRP6-202ENST00000535731 TOP2AP11388 1531 aaKnown RBP37.2■■■■□ 3.55
LRP6-202ENST00000535731 RIMBP3CA6NJZ7 1639 aa37.13■■■■□ 3.53
LRP6-202ENST00000535731 RIMBP3BA6NNM3 1639 aa37.13■■■■□ 3.53
LRP6-202ENST00000535731 RIMBP3Q9UFD9 1639 aa37.13■■■■□ 3.53
LRP6-202ENST00000535731 IFT140Q96RY7 1462 aa37.07■■■■□ 3.52
LRP6-202ENST00000535731 ZNF608Q9ULD9 1512 aaPredicted RBP37.04■■■■□ 3.52
LRP6-202ENST00000535731 ARHGEF11O15085 1522 aa36.99■■■■□ 3.51
LRP6-202ENST00000535731 CYB5RLQ6IPT4 315 aa36.9■■■■□ 3.5
LRP6-202ENST00000535731 PRDM2Q13029 1718 aa36.89■■■■□ 3.5
LRP6-202ENST00000535731 TOPBP1Q92547 1522 aa36.87■■■■□ 3.49
LRP6-202ENST00000535731 CCDC88BA6NC98 1476 aa36.86■■■■□ 3.49
LRP6-202ENST00000535731 ABCC8Q09428 1581 aa36.81■■■■□ 3.48
LRP6-202ENST00000535731 TRHP20396 242 aaPredicted RBP36.71■■■■□ 3.47
LRP6-202ENST00000535731 EIF4G3O43432 1585 aaKnown RBP36.7■■■■□ 3.47
LRP6-202ENST00000535731 AQRO60306 1485 aaKnown RBP eCLIP36.67■■■■□ 3.46
LRP6-202ENST00000535731 FBLN2P98095 1184 aa36.64■■■■□ 3.46
LRP6-202ENST00000535731 DNMBPQ6XZF7 1577 aa36.63■■■■□ 3.45
LRP6-202ENST00000535731 ARAP1Q96P48 1450 aa36.58■■■■□ 3.45
LRP6-202ENST00000535731 TARBP1Q13395 1621 aaKnown RBP36.54■■■■□ 3.44
LRP6-202ENST00000535731 CHD1O14646 1710 aa36.52■■■■□ 3.44
LRP6-202ENST00000535731 POLA1P09884 1462 aaPredicted RBP36.44■■■■□ 3.42
LRP6-202ENST00000535731 TDRD9Q8NDG6 1382 aaKnown RBP36.36■■■■□ 3.41
LRP6-202ENST00000535731 SOGA1O94964 1423 aa36.35■■■■□ 3.41
LRP6-202ENST00000535731 RAD54L2Q9Y4B4 1467 aa36.35■■■■□ 3.41
LRP6-202ENST00000535731 CHMP7Q8WUX9 453 aaPredicted RBP36.27■■■■□ 3.4
LRP6-202ENST00000535731 SNAPC4Q5SXM2 1469 aa36.21■■■■□ 3.39
LRP6-202ENST00000535731 CLASP1Q7Z460 1538 aa36.18■■■■□ 3.38
LRP6-202ENST00000535731 AEBP2Q6ZN18 517 aaPredicted RBP36.16■■■■□ 3.38
LRP6-202ENST00000535731 WDR97A6NE52 1622 aa36.13■■■■□ 3.37
LRP6-202ENST00000535731 MAGI1Q96QZ7 1491 aaPredicted RBP36.11■■■■□ 3.37
LRP6-202ENST00000535731 SYNJ1O43426 1573 aa36.11■■■■□ 3.37
LRP6-202ENST00000535731 FGD5Q6ZNL6 1462 aa36.11■■■■□ 3.37
LRP6-202ENST00000535731 GRIN2BQ13224 1484 aa36.07■■■■□ 3.37
LRP6-202ENST00000535731 SYNJ2O15056 1496 aa36.01■■■■□ 3.36
LRP6-202ENST00000535731 CUX1P39880 1505 aa35.96■■■■□ 3.35
LRP6-202ENST00000535731 GAPVD1Q14C86 1478 aa35.91■■■■□ 3.34
LRP6-202ENST00000535731 PBRM1Q86U86 1689 aa35.71■■■■□ 3.31
LRP6-202ENST00000535731 ABCA10Q8WWZ4 1543 aa35.69■■■■□ 3.3
LRP6-202ENST00000535731 ABCA5Q8WWZ7 1642 aa35.6■■■■□ 3.29
LRP6-202ENST00000535731 GRIN2AQ12879 1464 aa35.57■■■■□ 3.28
LRP6-202ENST00000535731 ERCC6L2Q5T890 1561 aa35.55■■■■□ 3.28
LRP6-202ENST00000535731 NUP160Q12769 1436 aa35.5■■■■□ 3.27
LRP6-202ENST00000535731 CEP170Q5SW79 1584 aa35.47■■■■□ 3.27
LRP6-202ENST00000535731 WRNQ14191 1432 aaPredicted RBP eCLIP35.46■■■■□ 3.27
LRP6-202ENST00000535731 FHAD1B1AJZ9 1412 aa35.39■■■■□ 3.26
LRP6-202ENST00000535731 ADAMTS12P58397 1594 aa35.38■■■■□ 3.25
LRP6-202ENST00000535731 SHROOM2Q13796 1616 aa35.33■■■■□ 3.25
LRP6-202ENST00000535731 JPH4Q96JJ6 628 aa35.26■■■■□ 3.24
LRP6-202ENST00000535731 PRG4Q92954 1404 aaPredicted RBP35.24■■■■□ 3.23
LRP6-202ENST00000535731 ERICH3Q5RHP9 1530 aa35.22■■■■□ 3.23
LRP6-202ENST00000535731 KIF13AQ9H1H9 1805 aa35.18■■■■□ 3.22
LRP6-202ENST00000535731 TOP2BQ02880 1626 aa35.18■■■■□ 3.22
LRP6-202ENST00000535731 SUPT5HO00267 1087 aaKnown RBP35.18■■■■□ 3.22
LRP6-202ENST00000535731 FAM69CQ0P6D2 419 aa35.17■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms