RNA–Protein interactions for RNA: ENST00000533643.1

COMMD9-208, Transcript of COMM domain containing 9, humanhuman

TSL 2

Gene COMMD9, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD9-208ENST00000533643 NISCHQ9Y2I1 1504 aa28.18■■■□□ 2.1
COMMD9-208ENST00000533643 CCDC180Q9P1Z9 1646 aa24.8■■□□□ 1.56
COMMD9-208ENST00000533643 ABCC9O60706 1549 aa23.95■■□□□ 1.43
COMMD9-208ENST00000533643 ZCCHC6Q5VYS8 1495 aaKnown RBP23.55■■□□□ 1.36
COMMD9-208ENST00000533643 DCAF8L2P0C7V8 631 aa23.42■■□□□ 1.34
COMMD9-208ENST00000533643 DCAF1Q9Y4B6 1507 aa23.32■■□□□ 1.32
COMMD9-208ENST00000533643 NACADO15069 1562 aa23.26■■□□□ 1.31
COMMD9-208ENST00000533643 MYO15BQ96JP2 1530 aa23.25■■□□□ 1.31
COMMD9-208ENST00000533643 RB1CC1Q8TDY2 1594 aa23.18■■□□□ 1.3
COMMD9-208ENST00000533643 SCRIBQ14160 1630 aa22.71■■□□□ 1.23
COMMD9-208ENST00000533643 UNC13AQ9UPW8 1703 aa22.62■■□□□ 1.21
COMMD9-208ENST00000533643 SHROOM4Q9ULL8 1493 aa22.55■■□□□ 1.2
COMMD9-208ENST00000533643 BICRAQ9NZM4 1560 aa22.5■■□□□ 1.19
COMMD9-208ENST00000533643 PABPN1Q86U42 306 aaKnown RBP eCLIP22.49■■□□□ 1.19
COMMD9-208ENST00000533643 CECR2Q9BXF3 1484 aa21.93■■□□□ 1.1
COMMD9-208ENST00000533643 EIF4G1Q04637 1599 aaKnown RBP21.84■■□□□ 1.09
COMMD9-208ENST00000533643 BAZ1AQ9NRL2 1556 aaPredicted RBP21.78■■□□□ 1.08
COMMD9-208ENST00000533643 SMARCA4P51532 1647 aa21.76■■□□□ 1.07
COMMD9-208ENST00000533643 MROH2BQ7Z745 1585 aa21.74■■□□□ 1.07
COMMD9-208ENST00000533643 DNAJC5BQ9UF47 199 aa21.68■■□□□ 1.06
COMMD9-208ENST00000533643 CC2D2AQ9P2K1 1620 aa21.66■■□□□ 1.06
COMMD9-208ENST00000533643 RSF1Q96T23 1441 aaPredicted RBP21.65■■□□□ 1.06
COMMD9-208ENST00000533643 ATAD2BQ9ULI0 1458 aa21.57■■□□□ 1.04
COMMD9-208ENST00000533643 PEG3Q9GZU2 1588 aa21.53■■□□□ 1.04
COMMD9-208ENST00000533643 SMARCA2P51531 1590 aa21.53■■□□□ 1.04
COMMD9-208ENST00000533643 WIZO95785 1651 aa21.5■■□□□ 1.03
COMMD9-208ENST00000533643 NCAPD3P42695 1498 aa21.49■■□□□ 1.03
COMMD9-208ENST00000533643 SUPT5HO00267 1087 aaKnown RBP21.44■■□□□ 1.02
COMMD9-208ENST00000533643 BAZ1BQ9UIG0 1483 aaKnown RBP21.39■■□□□ 1.02
COMMD9-208ENST00000533643 HMGXB3Q12766 1538 aa21.39■■□□□ 1.01
COMMD9-208ENST00000533643 TOP2AP11388 1531 aaKnown RBP21.29■■□□□ 1
COMMD9-208ENST00000533643 CCDC88BA6NC98 1476 aa21.08■□□□□ 0.97
COMMD9-208ENST00000533643 CADPSQ9ULU8 1353 aa20.89■□□□□ 0.93
COMMD9-208ENST00000533643 NESP48681 1621 aa20.86■□□□□ 0.93
COMMD9-208ENST00000533643 CFTRP13569 1480 aa20.84■□□□□ 0.93
COMMD9-208ENST00000533643 LAMC3Q9Y6N6 1575 aa20.81■□□□□ 0.92
COMMD9-208ENST00000533643 PDS5BQ9NTI5 1447 aa20.7■□□□□ 0.9
COMMD9-208ENST00000533643 FANCD2Q9BXW9 1451 aa20.64■□□□□ 0.89
COMMD9-208ENST00000533643 PRDM2Q13029 1718 aa20.62■□□□□ 0.89
COMMD9-208ENST00000533643 ERCC6Q03468 1493 aa20.59■□□□□ 0.89
COMMD9-208ENST00000533643 KIF21AQ7Z4S6 1674 aa20.57■□□□□ 0.88
COMMD9-208ENST00000533643 CEP164Q9UPV0 1460 aa20.56■□□□□ 0.88
COMMD9-208ENST00000533643 MRC2Q9UBG0 1479 aa20.45■□□□□ 0.86
COMMD9-208ENST00000533643 URB2Q14146 1524 aaKnown RBP20.42■□□□□ 0.86
COMMD9-208ENST00000533643 ABCC8Q09428 1581 aa20.42■□□□□ 0.86
COMMD9-208ENST00000533643 THOC2Q8NI27 1593 aaKnown RBP20.41■□□□□ 0.86
COMMD9-208ENST00000533643 WRNQ14191 1432 aaPredicted RBP eCLIP20.38■□□□□ 0.85
COMMD9-208ENST00000533643 CUX1P39880 1505 aa20.37■□□□□ 0.85
COMMD9-208ENST00000533643 TOPBP1Q92547 1522 aa20.36■□□□□ 0.85
COMMD9-208ENST00000533643 WDR62O43379 1518 aa20.35■□□□□ 0.85
COMMD9-208ENST00000533643 DNMBPQ6XZF7 1577 aa20.34■□□□□ 0.85
COMMD9-208ENST00000533643 SYNJ1O43426 1573 aa20.3■□□□□ 0.84
COMMD9-208ENST00000533643 TOP2BQ02880 1626 aa20.27■□□□□ 0.84
COMMD9-208ENST00000533643 CHIC1Q5VXU3 224 aa20.27■□□□□ 0.84
COMMD9-208ENST00000533643 BIVM-ERCC5R4GMW8 1640 aa20.25■□□□□ 0.83
COMMD9-208ENST00000533643 FGD5Q6ZNL6 1462 aa20.22■□□□□ 0.83
COMMD9-208ENST00000533643 TRIM41Q8WV44 630 aa20.21■□□□□ 0.83
COMMD9-208ENST00000533643 CUX2O14529 1486 aa20.21■□□□□ 0.83
COMMD9-208ENST00000533643 POLA1P09884 1462 aaPredicted RBP20.21■□□□□ 0.83
COMMD9-208ENST00000533643 SOGA1O94964 1423 aa20.16■□□□□ 0.82
COMMD9-208ENST00000533643 RAD54L2Q9Y4B4 1467 aa20.15■□□□□ 0.82
COMMD9-208ENST00000533643 IFT140Q96RY7 1462 aa20.11■□□□□ 0.81
COMMD9-208ENST00000533643 TARBP1Q13395 1621 aaKnown RBP20.09■□□□□ 0.81
COMMD9-208ENST00000533643 ABCA10Q8WWZ4 1543 aa20.05■□□□□ 0.8
COMMD9-208ENST00000533643 ZNF608Q9ULD9 1512 aaPredicted RBP20.02■□□□□ 0.79
COMMD9-208ENST00000533643 TDRD9Q8NDG6 1382 aaKnown RBP20■□□□□ 0.79
COMMD9-208ENST00000533643 WDR97A6NE52 1622 aa19.99■□□□□ 0.79
COMMD9-208ENST00000533643 AQRO60306 1485 aaKnown RBP eCLIP19.97■□□□□ 0.79
COMMD9-208ENST00000533643 KIF27Q86VH2 1401 aa19.92■□□□□ 0.78
COMMD9-208ENST00000533643 GAPVD1Q14C86 1478 aa19.92■□□□□ 0.78
COMMD9-208ENST00000533643 RUSC2Q8N2Y8 1516 aa19.91■□□□□ 0.78
COMMD9-208ENST00000533643 EIF4G3O43432 1585 aaKnown RBP19.91■□□□□ 0.78
COMMD9-208ENST00000533643 ABCA5Q8WWZ7 1642 aa19.91■□□□□ 0.78
COMMD9-208ENST00000533643 GRIN2BQ13224 1484 aa19.85■□□□□ 0.77
COMMD9-208ENST00000533643 IGF1RP08069 1367 aa19.83■□□□□ 0.77
COMMD9-208ENST00000533643 FAM9AQ8IZU1 332 aaPredicted RBP19.81■□□□□ 0.76
COMMD9-208ENST00000533643 EEA1Q15075 1411 aa19.8■□□□□ 0.76
COMMD9-208ENST00000533643 ERICH3Q5RHP9 1530 aa19.8■□□□□ 0.76
COMMD9-208ENST00000533643 PBRM1Q86U86 1689 aa19.78■□□□□ 0.76
COMMD9-208ENST00000533643 SNAPC4Q5SXM2 1469 aa19.76■□□□□ 0.75
COMMD9-208ENST00000533643 CSRNP3Q8WYN3 585 aa19.76■□□□□ 0.75
COMMD9-208ENST00000533643 MAGI1Q96QZ7 1491 aaPredicted RBP19.73■□□□□ 0.75
COMMD9-208ENST00000533643 CARMIL1Q5VZK9 1371 aa19.7■□□□□ 0.74
COMMD9-208ENST00000533643 FHAD1B1AJZ9 1412 aa19.69■□□□□ 0.74
COMMD9-208ENST00000533643 ADAMTS12P58397 1594 aa19.69■□□□□ 0.74
COMMD9-208ENST00000533643 SYNJ2O15056 1496 aa19.67■□□□□ 0.74
COMMD9-208ENST00000533643 CUL7Q14999 1698 aa19.66■□□□□ 0.74
COMMD9-208ENST00000533643 PRXQ9BXM0 1461 aa19.66■□□□□ 0.74
COMMD9-208ENST00000533643 FBLN2P98095 1184 aa19.65■□□□□ 0.74
COMMD9-208ENST00000533643 CHMP7Q8WUX9 453 aaPredicted RBP19.65■□□□□ 0.74
COMMD9-208ENST00000533643 RAPGEF2Q9Y4G8 1499 aa19.61■□□□□ 0.73
COMMD9-208ENST00000533643 GRIN2AQ12879 1464 aa19.6■□□□□ 0.73
COMMD9-208ENST00000533643 CHD1O14646 1710 aa19.56■□□□□ 0.72
COMMD9-208ENST00000533643 KIF21BO75037 1637 aa19.55■□□□□ 0.72
COMMD9-208ENST00000533643 EHMT2Q96KQ7 1210 aa19.52■□□□□ 0.72
COMMD9-208ENST00000533643 NUP160Q12769 1436 aa19.5■□□□□ 0.71
COMMD9-208ENST00000533643 OSCARQ8IYS5 282 aa19.49■□□□□ 0.71
COMMD9-208ENST00000533643 GOLGA3Q08378 1498 aa19.48■□□□□ 0.71
COMMD9-208ENST00000533643 CEP170Q5SW79 1584 aa19.47■□□□□ 0.71
COMMD9-208ENST00000533643 LOC105371045A0A1W2PR82 267 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms