RNA–Protein interactions for RNA: ENST00000533279.1

GMDS-210, Transcript of GDP-mannose 4,6-dehydratase, humanhuman

TSL 5

Gene GMDS, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GMDS-210ENST00000533279 NISCHQ9Y2I1 1504 aa26.53■■□□□ 1.84
GMDS-210ENST00000533279 CCDC180Q9P1Z9 1646 aa23.46■■□□□ 1.35
GMDS-210ENST00000533279 ABCC9O60706 1549 aa22.52■■□□□ 1.19
GMDS-210ENST00000533279 ZCCHC6Q5VYS8 1495 aaKnown RBP22.2■■□□□ 1.14
GMDS-210ENST00000533279 DCAF8L2P0C7V8 631 aa22.1■■□□□ 1.13
GMDS-210ENST00000533279 DCAF1Q9Y4B6 1507 aa22■■□□□ 1.11
GMDS-210ENST00000533279 NACADO15069 1562 aa21.96■■□□□ 1.11
GMDS-210ENST00000533279 MYO15BQ96JP2 1530 aa21.95■■□□□ 1.1
GMDS-210ENST00000533279 RB1CC1Q8TDY2 1594 aa21.91■■□□□ 1.1
GMDS-210ENST00000533279 AEBP2Q6ZN18 517 aaPredicted RBP21.48■■□□□ 1.03
GMDS-210ENST00000533279 SCRIBQ14160 1630 aa21.42■■□□□ 1.02
GMDS-210ENST00000533279 UNC13AQ9UPW8 1703 aa21.26■□□□□ 0.99
GMDS-210ENST00000533279 SHROOM4Q9ULL8 1493 aa21.24■□□□□ 0.99
GMDS-210ENST00000533279 PABPN1Q86U42 306 aaKnown RBP eCLIP21.08■□□□□ 0.97
GMDS-210ENST00000533279 BICRAQ9NZM4 1560 aa21.06■□□□□ 0.96
GMDS-210ENST00000533279 CHIC1Q5VXU3 224 aa20.67■□□□□ 0.9
GMDS-210ENST00000533279 BAZ1AQ9NRL2 1556 aaPredicted RBP20.6■□□□□ 0.89
GMDS-210ENST00000533279 EIF4G1Q04637 1599 aaKnown RBP20.57■□□□□ 0.88
GMDS-210ENST00000533279 CECR2Q9BXF3 1484 aa20.55■□□□□ 0.88
GMDS-210ENST00000533279 SMARCA4P51532 1647 aa20.51■□□□□ 0.87
GMDS-210ENST00000533279 MROH2BQ7Z745 1585 aa20.41■□□□□ 0.86
GMDS-210ENST00000533279 CC2D2AQ9P2K1 1620 aa20.37■□□□□ 0.85
GMDS-210ENST00000533279 SMARCA2P51531 1590 aa20.37■□□□□ 0.85
GMDS-210ENST00000533279 RSF1Q96T23 1441 aaPredicted RBP20.35■□□□□ 0.85
GMDS-210ENST00000533279 ATAD2BQ9ULI0 1458 aa20.28■□□□□ 0.84
GMDS-210ENST00000533279 PEG3Q9GZU2 1588 aa20.28■□□□□ 0.84
GMDS-210ENST00000533279 SUPT5HO00267 1087 aaKnown RBP20.24■□□□□ 0.83
GMDS-210ENST00000533279 BAZ1BQ9UIG0 1483 aaKnown RBP20.22■□□□□ 0.83
GMDS-210ENST00000533279 WIZO95785 1651 aa20.22■□□□□ 0.83
GMDS-210ENST00000533279 NCAPD3P42695 1498 aa20.2■□□□□ 0.82
GMDS-210ENST00000533279 HMGXB3Q12766 1538 aa20.19■□□□□ 0.82
GMDS-210ENST00000533279 DNAJC5BQ9UF47 199 aa20.11■□□□□ 0.81
GMDS-210ENST00000533279 TOP2AP11388 1531 aaKnown RBP20.11■□□□□ 0.81
GMDS-210ENST00000533279 CCDC88BA6NC98 1476 aa19.81■□□□□ 0.76
GMDS-210ENST00000533279 LAMC3Q9Y6N6 1575 aa19.67■□□□□ 0.74
GMDS-210ENST00000533279 CADPSQ9ULU8 1353 aa19.67■□□□□ 0.74
GMDS-210ENST00000533279 CFTRP13569 1480 aa19.61■□□□□ 0.73
GMDS-210ENST00000533279 PDS5BQ9NTI5 1447 aa19.57■□□□□ 0.72
GMDS-210ENST00000533279 PRDM2Q13029 1718 aa19.54■□□□□ 0.72
GMDS-210ENST00000533279 NESP48681 1621 aa19.54■□□□□ 0.72
GMDS-210ENST00000533279 ERCC6Q03468 1493 aa19.5■□□□□ 0.71
GMDS-210ENST00000533279 FANCD2Q9BXW9 1451 aa19.46■□□□□ 0.71
GMDS-210ENST00000533279 CEP164Q9UPV0 1460 aa19.44■□□□□ 0.7
GMDS-210ENST00000533279 KIF21AQ7Z4S6 1674 aa19.36■□□□□ 0.69
GMDS-210ENST00000533279 MRC2Q9UBG0 1479 aa19.3■□□□□ 0.68
GMDS-210ENST00000533279 ABCC8Q09428 1581 aa19.29■□□□□ 0.68
GMDS-210ENST00000533279 WRNQ14191 1432 aaPredicted RBP eCLIP19.25■□□□□ 0.67
GMDS-210ENST00000533279 DNMBPQ6XZF7 1577 aa19.22■□□□□ 0.67
GMDS-210ENST00000533279 THOC2Q8NI27 1593 aaKnown RBP19.19■□□□□ 0.66
GMDS-210ENST00000533279 WDR62O43379 1518 aa19.18■□□□□ 0.66
GMDS-210ENST00000533279 URB2Q14146 1524 aaKnown RBP19.17■□□□□ 0.66
GMDS-210ENST00000533279 TOPBP1Q92547 1522 aa19.17■□□□□ 0.66
GMDS-210ENST00000533279 TRIM41Q8WV44 630 aa19.14■□□□□ 0.65
GMDS-210ENST00000533279 CUX1P39880 1505 aa19.14■□□□□ 0.65
GMDS-210ENST00000533279 TOP2BQ02880 1626 aa19.13■□□□□ 0.65
GMDS-210ENST00000533279 BIVM-ERCC5R4GMW8 1640 aa19.12■□□□□ 0.65
GMDS-210ENST00000533279 SYNJ1O43426 1573 aa19.1■□□□□ 0.65
GMDS-210ENST00000533279 CUX2O14529 1486 aa19.09■□□□□ 0.65
GMDS-210ENST00000533279 FGD5Q6ZNL6 1462 aa19.06■□□□□ 0.64
GMDS-210ENST00000533279 POLA1P09884 1462 aaPredicted RBP19.03■□□□□ 0.64
GMDS-210ENST00000533279 IFT140Q96RY7 1462 aa19.01■□□□□ 0.63
GMDS-210ENST00000533279 SOGA1O94964 1423 aa19■□□□□ 0.63
GMDS-210ENST00000533279 RAD54L2Q9Y4B4 1467 aa18.9■□□□□ 0.62
GMDS-210ENST00000533279 ABCA10Q8WWZ4 1543 aa18.9■□□□□ 0.62
GMDS-210ENST00000533279 WDR97A6NE52 1622 aa18.89■□□□□ 0.61
GMDS-210ENST00000533279 TARBP1Q13395 1621 aaKnown RBP18.88■□□□□ 0.61
GMDS-210ENST00000533279 KIF27Q86VH2 1401 aa18.86■□□□□ 0.61
GMDS-210ENST00000533279 EEA1Q15075 1411 aa18.83■□□□□ 0.6
GMDS-210ENST00000533279 TDRD9Q8NDG6 1382 aaKnown RBP18.8■□□□□ 0.6
GMDS-210ENST00000533279 GAPVD1Q14C86 1478 aa18.79■□□□□ 0.6
GMDS-210ENST00000533279 EIF4G3O43432 1585 aaKnown RBP18.79■□□□□ 0.6
GMDS-210ENST00000533279 ZNF608Q9ULD9 1512 aaPredicted RBP18.77■□□□□ 0.6
GMDS-210ENST00000533279 ABCA5Q8WWZ7 1642 aa18.77■□□□□ 0.6
GMDS-210ENST00000533279 AQRO60306 1485 aaKnown RBP eCLIP18.75■□□□□ 0.59
GMDS-210ENST00000533279 GRIN2BQ13224 1484 aa18.75■□□□□ 0.59
GMDS-210ENST00000533279 ERICH3Q5RHP9 1530 aa18.71■□□□□ 0.59
GMDS-210ENST00000533279 PBRM1Q86U86 1689 aa18.7■□□□□ 0.58
GMDS-210ENST00000533279 FAM9AQ8IZU1 332 aaPredicted RBP18.68■□□□□ 0.58
GMDS-210ENST00000533279 MAGI1Q96QZ7 1491 aaPredicted RBP18.67■□□□□ 0.58
GMDS-210ENST00000533279 CUL7Q14999 1698 aa18.66■□□□□ 0.58
GMDS-210ENST00000533279 CSRNP3Q8WYN3 585 aa18.65■□□□□ 0.58
GMDS-210ENST00000533279 SNAPC4Q5SXM2 1469 aa18.64■□□□□ 0.57
GMDS-210ENST00000533279 RUSC2Q8N2Y8 1516 aa18.63■□□□□ 0.57
GMDS-210ENST00000533279 FHAD1B1AJZ9 1412 aa18.61■□□□□ 0.57
GMDS-210ENST00000533279 IGF1RP08069 1367 aa18.61■□□□□ 0.57
GMDS-210ENST00000533279 CARMIL1Q5VZK9 1371 aa18.59■□□□□ 0.57
GMDS-210ENST00000533279 ADAMTS12P58397 1594 aa18.59■□□□□ 0.57
GMDS-210ENST00000533279 CHMP7Q8WUX9 453 aaPredicted RBP18.58■□□□□ 0.56
GMDS-210ENST00000533279 SYNJ2O15056 1496 aa18.57■□□□□ 0.56
GMDS-210ENST00000533279 FBLN2P98095 1184 aa18.56■□□□□ 0.56
GMDS-210ENST00000533279 RAPGEF2Q9Y4G8 1499 aa18.54■□□□□ 0.56
GMDS-210ENST00000533279 KIF21BO75037 1637 aa18.51■□□□□ 0.55
GMDS-210ENST00000533279 PRXQ9BXM0 1461 aa18.51■□□□□ 0.55
GMDS-210ENST00000533279 GOLGA3Q08378 1498 aa18.49■□□□□ 0.55
GMDS-210ENST00000533279 GRIN2AQ12879 1464 aa18.48■□□□□ 0.55
GMDS-210ENST00000533279 CHD1O14646 1710 aa18.44■□□□□ 0.54
GMDS-210ENST00000533279 UBTFP17480 764 aaKnown RBP18.42■□□□□ 0.54
GMDS-210ENST00000533279 EHMT2Q96KQ7 1210 aa18.41■□□□□ 0.54
GMDS-210ENST00000533279 OSCARQ8IYS5 282 aa18.37■□□□□ 0.53
GMDS-210ENST00000533279 NUP160Q12769 1436 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms