RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 NISCHQ9Y2I1 1504 aa28.94■■■□□ 2.22
SSBP3-214ENST00000533209 CCDC180Q9P1Z9 1646 aa25.61■■□□□ 1.69
SSBP3-214ENST00000533209 ABCC9O60706 1549 aa25■■□□□ 1.59
SSBP3-214ENST00000533209 ZCCHC6Q5VYS8 1495 aaKnown RBP24.13■■□□□ 1.45
SSBP3-214ENST00000533209 DCAF8L2P0C7V8 631 aa24.12■■□□□ 1.45
SSBP3-214ENST00000533209 NACADO15069 1562 aa24.08■■□□□ 1.44
SSBP3-214ENST00000533209 RB1CC1Q8TDY2 1594 aa24.07■■□□□ 1.44
SSBP3-214ENST00000533209 MYO15BQ96JP2 1530 aa24■■□□□ 1.43
SSBP3-214ENST00000533209 DCAF1Q9Y4B6 1507 aa23.94■■□□□ 1.42
SSBP3-214ENST00000533209 UNC13AQ9UPW8 1703 aa23.47■■□□□ 1.35
SSBP3-214ENST00000533209 SCRIBQ14160 1630 aa23.41■■□□□ 1.34
SSBP3-214ENST00000533209 PABPN1Q86U42 306 aaKnown RBP eCLIP23.4■■□□□ 1.34
SSBP3-214ENST00000533209 BICRAQ9NZM4 1560 aa23.36■■□□□ 1.33
SSBP3-214ENST00000533209 SHROOM4Q9ULL8 1493 aa23.11■■□□□ 1.29
SSBP3-214ENST00000533209 DNAJC5BQ9UF47 199 aa22.88■■□□□ 1.25
SSBP3-214ENST00000533209 EIF4G1Q04637 1599 aaKnown RBP22.72■■□□□ 1.23
SSBP3-214ENST00000533209 CC2D2AQ9P2K1 1620 aa22.59■■□□□ 1.21
SSBP3-214ENST00000533209 CECR2Q9BXF3 1484 aa22.55■■□□□ 1.2
SSBP3-214ENST00000533209 SMARCA4P51532 1647 aa22.4■■□□□ 1.18
SSBP3-214ENST00000533209 BAZ1AQ9NRL2 1556 aaPredicted RBP22.39■■□□□ 1.18
SSBP3-214ENST00000533209 MROH2BQ7Z745 1585 aa22.32■■□□□ 1.16
SSBP3-214ENST00000533209 ATAD2BQ9ULI0 1458 aa22.28■■□□□ 1.16
SSBP3-214ENST00000533209 NCAPD3P42695 1498 aa22.25■■□□□ 1.15
SSBP3-214ENST00000533209 SMARCA2P51531 1590 aa22.23■■□□□ 1.15
SSBP3-214ENST00000533209 PEG3Q9GZU2 1588 aa22.2■■□□□ 1.14
SSBP3-214ENST00000533209 HMGXB3Q12766 1538 aa22.13■■□□□ 1.13
SSBP3-214ENST00000533209 RSF1Q96T23 1441 aaPredicted RBP22.12■■□□□ 1.13
SSBP3-214ENST00000533209 BAZ1BQ9UIG0 1483 aaKnown RBP22.09■■□□□ 1.13
SSBP3-214ENST00000533209 WIZO95785 1651 aa22.04■■□□□ 1.12
SSBP3-214ENST00000533209 TOP2AP11388 1531 aaKnown RBP21.83■■□□□ 1.09
SSBP3-214ENST00000533209 NESP48681 1621 aa21.67■■□□□ 1.06
SSBP3-214ENST00000533209 SUPT5HO00267 1087 aaKnown RBP21.64■■□□□ 1.05
SSBP3-214ENST00000533209 CADPSQ9ULU8 1353 aa21.61■■□□□ 1.05
SSBP3-214ENST00000533209 LAMC3Q9Y6N6 1575 aa21.61■■□□□ 1.05
SSBP3-214ENST00000533209 CCDC88BA6NC98 1476 aa21.6■■□□□ 1.05
SSBP3-214ENST00000533209 CFTRP13569 1480 aa21.51■■□□□ 1.03
SSBP3-214ENST00000533209 ERCC6Q03468 1493 aa21.51■■□□□ 1.03
SSBP3-214ENST00000533209 PDS5BQ9NTI5 1447 aa21.47■■□□□ 1.03
SSBP3-214ENST00000533209 KIF21AQ7Z4S6 1674 aa21.36■■□□□ 1.01
SSBP3-214ENST00000533209 FANCD2Q9BXW9 1451 aa21.35■■□□□ 1.01
SSBP3-214ENST00000533209 CEP164Q9UPV0 1460 aa21.3■■□□□ 1
SSBP3-214ENST00000533209 THOC2Q8NI27 1593 aaKnown RBP21.29■■□□□ 1
SSBP3-214ENST00000533209 PRDM2Q13029 1718 aa21.25■□□□□ 0.99
SSBP3-214ENST00000533209 CUX2O14529 1486 aa21.25■□□□□ 0.99
SSBP3-214ENST00000533209 MRC2Q9UBG0 1479 aa21.25■□□□□ 0.99
SSBP3-214ENST00000533209 WDR62O43379 1518 aa21.16■□□□□ 0.98
SSBP3-214ENST00000533209 URB2Q14146 1524 aaKnown RBP21.14■□□□□ 0.98
SSBP3-214ENST00000533209 TOPBP1Q92547 1522 aa21.03■□□□□ 0.96
SSBP3-214ENST00000533209 ABCC8Q09428 1581 aa21.01■□□□□ 0.95
SSBP3-214ENST00000533209 DNMBPQ6XZF7 1577 aa20.99■□□□□ 0.95
SSBP3-214ENST00000533209 CUX1P39880 1505 aa20.93■□□□□ 0.94
SSBP3-214ENST00000533209 POLA1P09884 1462 aaPredicted RBP20.86■□□□□ 0.93
SSBP3-214ENST00000533209 IFT140Q96RY7 1462 aa20.86■□□□□ 0.93
SSBP3-214ENST00000533209 WRNQ14191 1432 aaPredicted RBP eCLIP20.83■□□□□ 0.93
SSBP3-214ENST00000533209 FGD5Q6ZNL6 1462 aa20.82■□□□□ 0.92
SSBP3-214ENST00000533209 RAD54L2Q9Y4B4 1467 aa20.78■□□□□ 0.92
SSBP3-214ENST00000533209 TARBP1Q13395 1621 aaKnown RBP20.78■□□□□ 0.92
SSBP3-214ENST00000533209 SOGA1O94964 1423 aa20.78■□□□□ 0.92
SSBP3-214ENST00000533209 ZNF608Q9ULD9 1512 aaPredicted RBP20.77■□□□□ 0.92
SSBP3-214ENST00000533209 SYNJ1O43426 1573 aa20.76■□□□□ 0.91
SSBP3-214ENST00000533209 TOP2BQ02880 1626 aa20.75■□□□□ 0.91
SSBP3-214ENST00000533209 BIVM-ERCC5R4GMW8 1640 aa20.74■□□□□ 0.91
SSBP3-214ENST00000533209 AQRO60306 1485 aaKnown RBP eCLIP20.67■□□□□ 0.94e-8■■■■□ 24.5
SSBP3-214ENST00000533209 TDRD9Q8NDG6 1382 aaKnown RBP20.66■□□□□ 0.9
SSBP3-214ENST00000533209 EIF4G3O43432 1585 aaKnown RBP20.65■□□□□ 0.9
SSBP3-214ENST00000533209 ABCA10Q8WWZ4 1543 aa20.63■□□□□ 0.89
SSBP3-214ENST00000533209 WDR97A6NE52 1622 aa20.6■□□□□ 0.89
SSBP3-214ENST00000533209 GAPVD1Q14C86 1478 aa20.53■□□□□ 0.88
SSBP3-214ENST00000533209 ABCA5Q8WWZ7 1642 aa20.52■□□□□ 0.88
SSBP3-214ENST00000533209 GRIN2BQ13224 1484 aa20.51■□□□□ 0.87
SSBP3-214ENST00000533209 DNAJC5Q9H3Z4 198 aa20.47■□□□□ 0.87
SSBP3-214ENST00000533209 SNAPC4Q5SXM2 1469 aa20.47■□□□□ 0.87
SSBP3-214ENST00000533209 MAGI1Q96QZ7 1491 aaPredicted RBP20.43■□□□□ 0.86
SSBP3-214ENST00000533209 TRIM41Q8WV44 630 aa20.43■□□□□ 0.86
SSBP3-214ENST00000533209 PBRM1Q86U86 1689 aa20.42■□□□□ 0.86
SSBP3-214ENST00000533209 OSCARQ8IYS5 282 aa20.4■□□□□ 0.86
SSBP3-214ENST00000533209 FBLN2P98095 1184 aa20.38■□□□□ 0.85
SSBP3-214ENST00000533209 ERICH3Q5RHP9 1530 aa20.37■□□□□ 0.85
SSBP3-214ENST00000533209 KIF27Q86VH2 1401 aa20.37■□□□□ 0.85
SSBP3-214ENST00000533209 SYNJ2O15056 1496 aa20.36■□□□□ 0.85
SSBP3-214ENST00000533209 CHMP7Q8WUX9 453 aaPredicted RBP20.34■□□□□ 0.85
SSBP3-214ENST00000533209 CHD1O14646 1710 aa20.33■□□□□ 0.85
SSBP3-214ENST00000533209 IGF1RP08069 1367 aa20.32■□□□□ 0.84
SSBP3-214ENST00000533209 ADAMTS12P58397 1594 aa20.31■□□□□ 0.84
SSBP3-214ENST00000533209 FHAD1B1AJZ9 1412 aa20.31■□□□□ 0.84
SSBP3-214ENST00000533209 CHIC1Q5VXU3 224 aa20.3■□□□□ 0.84
SSBP3-214ENST00000533209 RUSC2Q8N2Y8 1516 aa20.26■□□□□ 0.83
SSBP3-214ENST00000533209 GRIN2AQ12879 1464 aa20.24■□□□□ 0.83
SSBP3-214ENST00000533209 CARMIL1Q5VZK9 1371 aa20.18■□□□□ 0.82
SSBP3-214ENST00000533209 CLASP1Q7Z460 1538 aa20.17■□□□□ 0.82
SSBP3-214ENST00000533209 CUL7Q14999 1698 aa20.17■□□□□ 0.82
SSBP3-214ENST00000533209 NUP160Q12769 1436 aa20.17■□□□□ 0.82
SSBP3-214ENST00000533209 CEP170Q5SW79 1584 aa20.13■□□□□ 0.81
SSBP3-214ENST00000533209 EEA1Q15075 1411 aa20.07■□□□□ 0.8
SSBP3-214ENST00000533209 ARHGEF11O15085 1522 aa20.07■□□□□ 0.8
SSBP3-214ENST00000533209 RAPGEF2Q9Y4G8 1499 aa20.06■□□□□ 0.8
SSBP3-214ENST00000533209 CSRNP3Q8WYN3 585 aa20.05■□□□□ 0.8
SSBP3-214ENST00000533209 PRXQ9BXM0 1461 aa20.05■□□□□ 0.8
SSBP3-214ENST00000533209 RIMBP3CA6NJZ7 1639 aa20.03■□□□□ 0.8
SSBP3-214ENST00000533209 RIMBP3BA6NNM3 1639 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms